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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0360400 |
| Transcript ID | LotjaGi4g1v0360400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G66520.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520; TrEMBL-Plants: tr|I1KRU7|I1KRU7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73926111..73927862) extracted from Lotus japonicus Gifu genome v1.2.
CGAATAGTTTGTGTTGAGTGTAGTCCCATTGTCTAGGTATCTTTTTGCCGCCACAATAGCATAACATGTTCATAGTGGTG ATACAATAACACTAACAATTGCATGGGGCATGTGCATGTTTTCATTGTTTTGTGATGGTGACCCTGAACCTGATCAAGCG ATCCACAACGTTGTCTCATCTCCTCCAACTCCACACCCTGTTCCTGAAATCCTCCCTTGATCACAACCCTTACCTCATTT CTCAGTTTCTCTTATCAGCCTCCACCATTTCCCTTCCTTTCGCCAAATCCTTCTTCAACTCCCTCCCCATCACCCCTCCA CTCTTTGCTTGGAACACAATCATCAGAGCACTTGCTAACAGCCCCACCCCACTTGAATCCCTCGTCTTCTTCCGCCGCCT TCAACGCTCGGGCCTTTCCCCTGATAACTTCACCTACCCTTTTGCCCTCAAGGCCTGCGCTCGCGTTTCGTCGCTTTCCC ATGGTGGGGTGTTTCATTCCTTGACCCTGAAGACGGGTTTGAGCTCTGATTGTTATACAGACAATACCCTTTTGAAATTT TATGCTGATTGTGGCGCGATCGGGTTTGCGCGCCAGGTGTTTGATGAAATGGCTGTTAGAACTGTTGTGACTTGGAGTTC CATGATTGCTGCATATGTTGGTTCTAATTCCCCTTCGGAGGCGTTGCATGTGTTTCAAGAGATGAGGCTTGCAAATGAAA AGCCGAACTCGGTCACTTTGGTGAGTTTGCTTTCTGCTTGTAGTAAAATGGTCAATGTCAGTGCGGGTGAGTCCATTCAT TCCTACATTACACGGAATCACGTTGATATGAGTGTTGAGTTGGGTACTGCTTTGTTTGAGATGTATGCAAAATGTGGCCT GATGAAGAAAGCCCTTCTGGTTTTCAATTCGATGCCTGAAAAGAATTTGCAGTCCTTCACAATCATGATTTCTGCTCTTG GAAATCATGGGTGTCAAAAGGATGTGATTTCTCTGTTTACGCAGATGGAGGATATGGGGTTGAAACCAGATGGTCTATCT TTTTCAGTGATTCTATCTGCCTGCAGTCACATGGGACTTGTTGATGAGGGAAAAATGTATTTTGATCGGATGGTGAGGAT GTATAACATAAAGCCAAGTGTTGAGCATTATGGATGCATGGTTGACTTGCTAGCAAGAGCTGGCTTGATTCAAGAAGCTT ATGATATCATTAAGAACATGCCCATGGAGCCCAATGCTGTTATACTGAGGAGTTTTCTGGGAGCTTGTAGAAATCAAGGG TCCGTTCCTAGTTTGGATGATAAACTTATGTCCAAACTGGAGTCTGAATTGGGGGCAAACTATGTACTTACTGCTAATGT CTTTTCCACCTGTGCTTCCTGGAAAGATGCCAGTAACTTGAGATTAGCCATGAAACAGAAAGGGTTAAAGAAAAATCCTG GTTGTAGTTGGTTGGAGGTGCAAAATTGATATCCAGTATATTCTGAGATGAGGCGCCACTATAAGTTTAGTTCAAAGAAG CTATGGCTTACAAGCCATCTTTCTTCATTCTTCCTATATTTCAATTATTGATTGTAAATAGATGGATACACAACCACTGA CTGTTAGCTGTTAGGAGTTAGAACTGACTGCAAATTGTACATTTTAATGAGTTTAACTCGGGTTTCAATTCTTTTCTGTT AGGGATTTTGCTTGATCTTCTGAATAAGTCCCGTTCATGCTTAAGCTATAAATTTGTTTGAATGGCATATGC
CDS sequence (LotjaGi4g1v0360400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACCCTGAACCTGATCAAGCGATCCACAACGTTGTCTCATCTCCTCCAACTCCACACCCTGTTCCTGAAATCCTC CCTTGATCACAACCCTTACCTCATTTCTCAGTTTCTCTTATCAGCCTCCACCATTTCCCTTCCTTTCGCCAAATCCTTCT TCAACTCCCTCCCCATCACCCCTCCACTCTTTGCTTGGAACACAATCATCAGAGCACTTGCTAACAGCCCCACCCCACTT GAATCCCTCGTCTTCTTCCGCCGCCTTCAACGCTCGGGCCTTTCCCCTGATAACTTCACCTACCCTTTTGCCCTCAAGGC CTGCGCTCGCGTTTCGTCGCTTTCCCATGGTGGGGTGTTTCATTCCTTGACCCTGAAGACGGGTTTGAGCTCTGATTGTT ATACAGACAATACCCTTTTGAAATTTTATGCTGATTGTGGCGCGATCGGGTTTGCGCGCCAGGTGTTTGATGAAATGGCT GTTAGAACTGTTGTGACTTGGAGTTCCATGATTGCTGCATATGTTGGTTCTAATTCCCCTTCGGAGGCGTTGCATGTGTT TCAAGAGATGAGGCTTGCAAATGAAAAGCCGAACTCGGTCACTTTGGTGAGTTTGCTTTCTGCTTGTAGTAAAATGGTCA ATGTCAGTGCGGGTGAGTCCATTCATTCCTACATTACACGGAATCACGTTGATATGAGTGTTGAGTTGGGTACTGCTTTG TTTGAGATGTATGCAAAATGTGGCCTGATGAAGAAAGCCCTTCTGGTTTTCAATTCGATGCCTGAAAAGAATTTGCAGTC CTTCACAATCATGATTTCTGCTCTTGGAAATCATGGGTGTCAAAAGGATGTGATTTCTCTGTTTACGCAGATGGAGGATA TGGGGTTGAAACCAGATGGTCTATCTTTTTCAGTGATTCTATCTGCCTGCAGTCACATGGGACTTGTTGATGAGGGAAAA ATGTATTTTGATCGGATGGTGAGGATGTATAACATAAAGCCAAGTGTTGAGCATTATGGATGCATGGTTGACTTGCTAGC AAGAGCTGGCTTGATTCAAGAAGCTTATGATATCATTAAGAACATGCCCATGGAGCCCAATGCTGTTATACTGAGGAGTT TTCTGGGAGCTTGTAGAAATCAAGGGTCCGTTCCTAGTTTGGATGATAAACTTATGTCCAAACTGGAGTCTGAATTGGGG GCAAACTATGTACTTACTGCTAATGTCTTTTCCACCTGTGCTTCCTGGAAAGATGCCAGTAACTTGAGATTAGCCATGAA ACAGAAAGGGTTAAAGAAAAATCCTGGTTGTAGTTGGTTGGAGGTGCAAAATTGA
Protein sequence (LotjaGi4g1v0360400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTLNLIKRSTTLSHLLQLHTLFLKSSLDHNPYLISQFLLSASTISLPFAKSFFNSLPITPPLFAWNTIIRALANSPTPL ESLVFFRRLQRSGLSPDNFTYPFALKACARVSSLSHGGVFHSLTLKTGLSSDCYTDNTLLKFYADCGAIGFARQVFDEMA VRTVVTWSSMIAAYVGSNSPSEALHVFQEMRLANEKPNSVTLVSLLSACSKMVNVSAGESIHSYITRNHVDMSVELGTAL FEMYAKCGLMKKALLVFNSMPEKNLQSFTIMISALGNHGCQKDVISLFTQMEDMGLKPDGLSFSVILSACSHMGLVDEGK MYFDRMVRMYNIKPSVEHYGCMVDLLARAGLIQEAYDIIKNMPMEPNAVILRSFLGACRNQGSVPSLDDKLMSKLESELG ANYVLTANVFSTCASWKDASNLRLAMKQKGLKKNPGCSWLEVQN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 42 | 117 | 76 | 2.2E-7 | ||
| PANTHER | 49 | 220 | 172 | 2.2E-79 | – | |
| ProSiteProfiles | 62 | 96 | 35 | 8.944 | ||
| ProSiteProfiles | 97 | 131 | 35 | 5.152 | ||
| Gene3D | 118 | 222 | 105 | 2.0E-20 | ||
| ProSiteProfiles | 132 | 162 | 31 | 7.256 | ||
| ProSiteProfiles | 163 | 197 | 35 | 10.611 | ||
| Pfam | 163 | 211 | 49 | 3.9E-9 | ||
| TIGRFAM | 165 | 198 | 34 | 1.5E-6 | ||
| ProSiteProfiles | 198 | 232 | 35 | 6.084 | ||
| PANTHER | 217 | 427 | 211 | 2.2E-79 | – | |
| ProSiteProfiles | 233 | 263 | 31 | 6.993 | ||
| Gene3D | 238 | 443 | 206 | 5.7E-35 | ||
| Pfam | 264 | 311 | 48 | 4.0E-4 | ||
| ProSiteProfiles | 264 | 298 | 35 | 10.424 | ||
| TIGRFAM | 267 | 299 | 33 | 5.5E-5 | ||
| ProSiteProfiles | 299 | 329 | 31 | 8.089 | ||
| TIGRFAM | 302 | 335 | 34 | 2.5E-4 | ||
| ProSiteProfiles | 335 | 365 | 31 | 7.399 | ||
| Pfam | 338 | 363 | 26 | 0.035 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0360400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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