Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0363600 |
| Transcript ID | LotjaGi4g1v0363600.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC transporter C family-like protein; TAIR: AT3G13080.1 multidrug resistance-associated protein 3; Swiss-Prot: sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3; TrEMBL-Plants: tr|A0A072TTN1|A0A072TTN1_MEDTR Multidrug resistance protein ABC transporter family protein; Found in the gene: LotjaGi4g1v0363600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74274703..74277088) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAATGGTTATCAGTCCGAATCAACTTTCTCTTCAATTTGGTCTTCTATTTTGTTCTTGTCATCTTGGTCACTCTACC GAAGTCTGCCATTGACCCCAGTAAGTTTCTTACTACCCATTTCTTCTTATAAGTGATAGAGGTTCATACTATTGTGACTA CCAATTTTCTACTAGTGCAATTAAGAAACTCCATGTAAAGTTACAGGTTATTGATTAACCTCTGGTTACAATTGTTGTGA CTTCACAACCAAAAGAAAAATAATTTTGAAGATAAATTGATTTTTTCTACTTGAGCCTTCTAAAGGTGACTGTAATACCA TGATTCTAAGTAACTAATTATTGATCTATGGGAATTGGCAAATATACAACACTAGAATAACTTTTGTTCTATGTTACTTA TGTGTATTATTATGTGTAATTTCAGTGTATCATGGAAATATGTTAAAAAGGAAACCTAGTGCTTTGAAGCTACTGCCACG GCAGGGTTCCGCAAAGTGTTTGATCCATCACGGATCTAGGCAGTCTTACATTACATTTTCAAGAGGCTGTTTTTTTGTAT ATGTTTTTCCTCTCTCAAGATAGTACTCAAAGCATAAGGAGAGGTTCTCGAATAAGTCATTTCTAATAAGTTTAAGCGCA TGAGACCAGTATGCCTCAGCTTAAGGCAGAATGTTAGAAGCATCTATTATGTCTAGGTTTTGGAAAAATGCTTAGGCTCA ATGTATCAGGTAACTATAGAGTTTAGGGAAATTGTATCTTTGTACTAATATTGCATCTGTGTTGTGGTTGAATACCTCTC AACAATATGTATAAATAATGCCTGTTAAAACGGTAAAGAAATAATTTAGATTGGATCAACTAACAAGTACATCAGATTTT AAAGTTGGTTCTAATAGAAATCTTGGTTTCATATCTTCAACTTATTGCTTCATCTGGTTTTCAGGCTTGGCAGGGCTAGT TGCTACTTATGGTTTGAACTTGAACGTGCTTCAGGCTTGGGTGATTTGGAATCTTTGCAATGTTGAAAACAAAATGATAT CTGTTGAGAGAGTATTGCAATTCTCTAACATACCAAGTGAAGCACCATTAATTATTGAAGATTGTAGGCCTGAACCAGAG TGGCCTGGGGATGGAAAAATTGAACTCCATAACCTTCATGTACAGTATGATCCTGCTGCTCCTATGGTTCTCAAAGGTGT AACTTGCGTCTTCCCAGGACGAAAGAAAATTGGAGTTGTAGGCAGGACAGGGAGTGGAAAATCTACTCTGGTGCAAGCCC TATTTCGAGTGGTGGAGCCTTTGGAAGGGTGCATACTCATTGATGGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTA AGATCTAAGCTTGGCATAATTCCTCAGGATCCGACCTTGTTTCTAGGTACCGTAAGGACGAACTTGGATCCTCTGGAACA ACATACAGATCAAGAACTTTGGGAGGTTAGTACTAAATTACTTTCTTGAAAATGTCAATATTTATCTCATTACTAAAGAA AACTGTACTTTTTCAGGTTCTAAGCAAATGCCATCTTGCCGAAATAGTAAAGCAAGATCCAAGGCTTCTTCATGCACCAG GTATAGATATATCTGTTAAACCAATCAGATCATTAAGAAGATAACATAATAACCGCTCCTCCTGCTCTTCAGTTATGGTG AAGTTTTTTCTTTTTCTTAAATGCTTGTATTGCAAATTTGTGTAGTGGCTGAAAATGGAGAAAATTGGAGTGTCGGACAA AGACAGCTAGTTTGCCTTGCTAGGTTGCTACTGAAGAAAAGAAAAATTTTGGTGCTTGATGAGGCAACTGCATCGATAGA CACTGCAACTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGCGGATGCACTGTCATTACTGTGGCACACAGAA TTCCTACAGTCATTGATAATGATTTGGTGTTGGTCCTTGATGAAGGTAATAGAAGACTCAATATGTTCTTCAATATTATA ATCATAGCATTAATGACAATTAAACATAGGAGAACATATTTTCTCAAATATAGCAGTGTATCAGACCATCCAGAAGGATT TAACTGGAGGATTTTTTTAGGGAAGGTGAAAAAGGAATTCACATATTGGTGCTAGGTTGAGTTTAACTTAATTTTCATGA ATAATGGTAGTACTGCACTCTATTTTGTGAACTTGGAGCTAATAAACACTACTGTTCGGATGTATACAGGGACAATTGCT GAGTATGATCAACCATCTCAATTGTTACTGAACAATTCTTCTTCATTCTCGAAGTTGGTTTCAGAATTTGTGAGGAGATC ATCCCAAAGTAACTGCCACAAAGGATAACGAATGAGAACAAACACAATTCATTATTTCAATGCTGA
CDS sequence (LotjaGi4g1v0363600.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAATGGTTATCAGTCCGAATCAACTTTCTCTTCAATTTGGTCTTCTATTTTGTTCTTGTCATCTTGGTCACTCTACC GAAGTCTGCCATTGACCCCAGCTTGGCAGGGCTAGTTGCTACTTATGGTTTGAACTTGAACGTGCTTCAGGCTTGGGTGA TTTGGAATCTTTGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAGTATTGCAATTCTCTAACATACCAAGTGAAGCA CCATTAATTATTGAAGATTGTAGGCCTGAACCAGAGTGGCCTGGGGATGGAAAAATTGAACTCCATAACCTTCATGTACA GTATGATCCTGCTGCTCCTATGGTTCTCAAAGGTGTAACTTGCGTCTTCCCAGGACGAAAGAAAATTGGAGTTGTAGGCA GGACAGGGAGTGGAAAATCTACTCTGGTGCAAGCCCTATTTCGAGTGGTGGAGCCTTTGGAAGGGTGCATACTCATTGAT GGTGTAGATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGCATAATTCCTCAGGATCCGACCTTGTTTCT AGGTACCGTAAGGACGAACTTGGATCCTCTGGAACAACATACAGATCAAGAACTTTGGGAGGTTCTAAGCAAATGCCATC TTGCCGAAATAGTAAAGCAAGATCCAAGGCTTCTTCATGCACCAGTGGCTGAAAATGGAGAAAATTGGAGTGTCGGACAA AGACAGCTAGTTTGCCTTGCTAGGTTGCTACTGAAGAAAAGAAAAATTTTGGTGCTTGATGAGGCAACTGCATCGATAGA CACTGCAACTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGCGGATGCACTGTCATTACTGTGGCACACAGAA TTCCTACAGTCATTGATAATGATTTGGTGTTGGTCCTTGATGAAGGGACAATTGCTGAGTATGATCAACCATCTCAATTG TTACTGAACAATTCTTCTTCATTCTCGAAGTTGGTTTCAGAATTTGTGAGGAGATCATCCCAAAGTAACTGCCACAAAGG ATAA
Protein sequence (LotjaGi4g1v0363600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEWLSVRINFLFNLVFYFVLVILVTLPKSAIDPSLAGLVATYGLNLNVLQAWVIWNLCNVENKMISVERVLQFSNIPSEA PLIIEDCRPEPEWPGDGKIELHNLHVQYDPAAPMVLKGVTCVFPGRKKIGVVGRTGSGKSTLVQALFRVVEPLEGCILID GVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLSKCHLAEIVKQDPRLLHAPVAENGENWSVGQ RQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPTVIDNDLVLVLDEGTIAEYDQPSQL LLNNSSSFSKLVSEFVRRSSQSNCHKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 339 | 339 | 8.4E-165 | – | |
| PANTHER | 1 | 339 | 339 | 8.4E-165 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SUPERFAMILY | 2 | 79 | 78 | 5.23E-7 | ||
| CDD | 3 | 74 | 72 | 7.5895E-17 | – | |
| TMHMM | 4 | 26 | 23 | - | – | |
| Phobius | 6 | 26 | 21 | - | – | |
| Phobius | 27 | 34 | 8 | - | – | |
| TMHMM | 33 | 55 | 23 | - | – | |
| Phobius | 35 | 55 | 21 | - | – | |
| Phobius | 56 | 347 | 292 | - | – | |
| Gene3D | 82 | 335 | 254 | 3.3E-80 | – | |
| SUPERFAMILY | 91 | 325 | 235 | 9.61E-68 | ||
| CDD | 97 | 317 | 221 | 9.67631E-131 | – | |
| ProSiteProfiles | 99 | 333 | 235 | 16.887 | ||
| Pfam | 117 | 264 | 148 | 2.8E-30 | ||
| SMART | 125 | 308 | 184 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. |
Expression pattern of LotjaGi4g1v0363600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…