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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0363900 |
| Transcript ID | LotjaGi4g1v0363900.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase, putative; TAIR: AT1G27900.1 RNA helicase family protein; Swiss-Prot: sp|Q93Y16|DEAH4_ARATH Probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4; TrEMBL-Plants: tr|K7KQA5|K7KQA5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0363900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74389360..74397087) extracted from Lotus japonicus Gifu genome v1.2.
CCGGCGACGATGGCGACCCTTCCCATCGTCCAATACGAAGAAAAAATCCTCGAAACCGTTGAGGCGAACCCCGTCGTCGT CGTCATCGGAGAAACCGGTTCCGGCAAGAGCACCCAGCTCTCTCAGATGCTACTCCGCCGCGGTTTCTCCAAAATCGCCG TCACTCAACCCCGTCGAGTCGCCGCCGTCACTGTCGCCAGGTAACCAAATCAAACACCAACTACAACTAGGGCTTTCTTA ATTCCTCACCTCATGACTAACGGTGTCGTTTTATCTTCTTCCACAGACGAGTTGCGCAAGAGCTTGATGTTCGCCTCGGT GAGGAAGTAGGTTACGCCATTCGATTTGAGGATAGAACTTCTCCCACCACGCGCATAAAGTAATGCTGCTGCCATTGATT CTAGATTTTTTGTTTTGCTCTTGATTTTCTCAGCTTGGTGTGTTGATTGTGTTTGATTTGATTTGATTAGGTACCTCACT GATGGGGTTCTTCTTCGCGAAAGCCTAGCTAATCCGGAGCTTAATGAGTATGATGTGATCATATTAGACGAAGCTCATGA ACGGAGTTTGAACACGTAAGAAATGCGCGACCAGAGCTTTATATATGTTATAAAGAAAATGAGAAAAGACCAAATTTATT GGTGTGTTCGTTTATGTGCAATGTGTGATTGTGGTATTTGTCACCAGGGATATTTTGATGGGCCTTATGAAGCGCTTGGT TAAACTTCGATCTTCCAATCTCAAAGTTTTGATCACGTCGGCGACTCTTGATGGTGATAAGGTATCAAAGTTCTTTGCAG ATTGTCCTGTGTTGAGCATCCCGGGGAAATTGTATCCGGTTGAAATTCTTTATAGCAAGGAGCGTCCCCCAAACTATCTC GAGTCTTGTCTGAAAACAGCTCTTGGTAGGACCTGTAGTTTTAACCTCGTCTTCATGGCTAGATAGTTTGTTTTATTAGT ACCTGTGAGGCTGTGATAAATAATGTGCTTGCATGTGTGTGTTAAGAAATTTGCCTTGCCATCATCTAGTTAGACAAAAA TTTATGTCACAATGTAAGTGTTTGTCTATCCGATTACAATTTGATCAAAACTCGAGCATGAGATGTCTATATGCCATGTA TCAATGAAAAGGGTGGTTCTTGCTAAAAATGCATACAAGTAAATAAGCTGCTACAAGGGTGATGCATTTGAAATATGAAC TGCGAAATCTACGAATTCATGTGGATGCTAATAAAGTCACATTCACTTCTATATATATATTATTTTTTTACATCCAGTGG ATGATGAGGTAATTGGTTTTGCAGATATACATACTCGCGAACCAGAAGGGGATATTTTAATATTTATGACTGGACAGGTG AGCATTTTTGTAAATAGTATTTGCACTATAATACGATGTAAATCTTAATTTTGCAATGTAAATTTTAATCCTATAGTTTC AAATATGGTGTAATGGTTGAACAAGTTTCCATGACCTTTGTCCAGGATGACATAGAGAAGTTGGTATCTAAGTTGGAAGA TAAAGTTCGGGCTCTCGAGGAAGGTTCCTGCATGGATGCTATAATCTTCCCCCTACACGGTTCGTTGCCGCCTGAATTGC AGGCAAGTACTTTTCATTTTTCTAGAATCTTCGTAATTAAGAAATCTGCTTACCATTGGTAAATGCTACTCACTCCGAGT TCCAATTTCCAAATACAATCAATCTTCTATAAACGGATGTAATGATGCATGTTTGATACATTCCCTTCTTTTTAGTTTTG TCTACACACAAACTTATAGAATGTCAAACTGCCTTGAGTGGGTTTATCTTGTAATATCATAGAATCATACTTCCTTGCTT GCAATGAACTTTTAAGAGCATAGTTGCACCTTTTCTTTTGGAGAAAAATCGTAAATAAACAACAATTGATGTTTGATATA TTCTATCCGACAACCAAGTTTGAGGCATGATATTATTTTATATATTTGAAACTCATGCATGTTTTATAATCTTCTTACAG GTGCGTGTTTTTAGTCCTCCACCTCCAAATTGCAGACGAATTATTGTTGCAACAAATATTGCTGAAACTTCTCTGACTGT TGATGGTGTAGTGTAAGGGCACTGATACTAAGTTAAATTTTACTATTTTACAATTATAACTTCACTTACTATATGCATCC CCATTACCCAAGTTACTATTTATATATCCTCACGACGAAATTTATTGTTTCTGTATCTACACTTCTATTAGAATTTTCCC AGATTTTTGCTGTTTAATTACACTTCAATATTGTGTTGAATTGCTTCCTGCCCAAACCTTTTACTGTGATTTTGCCTTTT TTATGTTTTCTTTCTAAAACAGACCCATGTGTAACATTGGACACTGTATCCAGTTACTTATTATAATAATTTAAATGCTT CTTATTTCTATAGCCTATGTATTTTTGTAATAGCCAGAGAAAAGATTAATAATATTTGAAAAATCAAAACCCTCTATAGT CCATTTATTGAATATGAGCTGATAGTGCATGATTAAACCATTTCTGTAAAAGTAGTGTGGATATTCGTAACTGTTGCACC TATAAGTTCTCCATATATACTGTAGCTGGCGATGCTTTTTTATTTATTTTTGCTGTAATTTAAAAAAATTACATGCCACA GGATGTGTGGTTGCTTATTCTTTAGATTGCATATGTTTAAAGATATGTAAATATGCAGTTTTCCTATGCATTATGCAATT TAGCAAACTTTTAAGTTAGAACATATAATGACTTGATTTCTTGTAGCACTTTTTTAGATGCAAGAACAAACATGTCCATC TTGCCATTTTAATTTGCCCATTGTGATTGGAGTGTTTACATTATTTGTTCGATTTGTGGTATTTTGATAATGGTTTTCTC CTTCTGATCAATCACACCAACTTGTCTACTTACAGTTTCTATTTTTTTTTTTTATGTTATGAATTTTAGATATGTTATTG ACTCGGGGTATGTAAAGCAAAGGCAGTACAATCCATCCAGTGGGATGTATTCTCTTGATGTTGTTCAAATTAGCAAGTAA GCATTTAATATTTTAACATCTTTTTGTGTCTTGAAGCTTAGATCATGATGCAATGTTTTCTGTTTTACATACATACAAGC AAATCATATATGAAGTTTTTTTTGGGCCCCTTCACTATAGTGATCATACTAAGTATTTGTTTGGTTATAGTTTCCAGTTC CCAAGTGGAAAAGTATGTGAGAGGATACCTTCAGCAGCATATGTTTGATTTGCTCCAAATGTACATTTGGAGACAAACCT AACAGCCTCTAAATGCGTCATTAGTCTTTTCTTTATTACAATGAACAAAAAGGATACAATATATATTGGTTGAAAGGTTT CTTGTTGCATCAAAAATTATCAGGACGGTTTTAATTTTTGTAACCAAGTTCATAAGCTTTAAGATGATTCAAGATATTTC CTGACATTGCAGAGTGCAAGCTAATCAGCGCGCAGGCCGAGCTGGACGAACACGACCAGGGAAATGCTACCGTCTATATC CTTCCCGACTTTTCCAAGATGAGTTTTTGGATGTTACAGTACCTGAAATTCAGAGATCTTCTCTCGCCGGCAGTGTGCTT TACTTGAAGTCATTGGACCTCCCTGATATTGACATTCTCAAATTTGACTTTCTTGATCCTCCTTCATGTAAGATCAGTTT ACAGTATACTTTTTCGACTAGCAGTATGGAATAACTAGTTCTCGTTGTTCTTGGGAAGTTGCATTTTTTGTTATATCAGA AGTATTGATTCTTTGGTAGATTAGTTCTTGTGGTTTTTAATATTCTTGTGACATGAAGGTCAATTGAAAGGAGGTTTAGG AGAGCTATAGGGGATCACAGCCCCTAACTGTTATTTTTGTTGTAAAACTACCTAGCCAATTGAAAATAGTTGGTTAGGGA GTTATAGCGAATAGTTAGATTGTAGACGAATAAATAAAGAGTGATAGAGACTAGTTTAGGTATCCGGGTGGAGTTGTGGA CAGGGGTTAGATTGTAGACGAATAAAAAAAGAGTGATAGACTTTTTGGGATATCCTTGTATTTTTGGAATTGTGGAGAGG GATGAGACTCTCGTACTTACTTAGCAACCCTTGTTTCTTTCTTGTTCTGCTTTCTAGATCTGTTCTACATTGGTCAGATT CTGGGTTAATCCTTGACTTCTAATTTATAATCTGATTGAATAATCACATCTTTTGCAGCTGAGTCCTTACAAGATGCCTT GAAGCAATTATATCTGATTGATGCTATTGATGAAAATGGTGCAATTACAAGTATTGGACGAAAAATGGCTGGTACTTATT TTCTTTATGTTTTGGCGTTGAACGTCAAATATTTGGACGTAAAAATAATGCACTACGCATTTGTTATCTTCATGATCATG ATAAAAGCTTTTGACTAGTATAATATTTTCTATCATCATCAATATTTTACCCATTCGTTATCCTATCTGATGTTTGAGTT GAGTACTTGTCTAGATTACCTGAGTTGTTTTTTTATTCTATGCAGAGCTTCCATTAGAACCATCCCTATCAAGAACTTTA ATAGAGGCAAACAATTATGGTTGCATAACTGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTGCATTGCTACC AGGGCAGAGGCAGAGGTTGGGTCATCTGACGTTTGTATTTGTGTGGATGTTCTATTGATGTGGAAGAATCAGAAAAGAAA TAAAAAAAAATCTAATATCAATTGATTTTGTTTGAAATGACTTTAATACCCACAGAACTTCTGTAGTCCTAAAAGGAAAG AGTATTGTTACTGGGTCCAATTAAAGTTTTGATGCTAACCTTCATGCCAAGGGGACGGAGGTTAGCATTCCCTGTCAACT GAAAGCATTGACTCCCAATAAAGAGGGTTTATGTCAAGAAAAATAGAGATGCAGTAGGGGAACATAACCCCTGAAAGGTG CAACTAATTAGTTGTTATGATGTGACAGATAGCTGCCAACTATAGGAGATTATTGTCATCAGTTGGGGTGATTGTGAACA AATAGGGGAGAGTGGTAGAGCTGGGATTTACTTGTCTAAGTAAGGGAATTGGGAGAGGTGTTAGACTTCTGGAATTATCC AGCTATTCTTTTGTACAGAGGATTCTGCCCTGTTCATGGCTGTGACCACAATGGTGCAGGCTCAGTTTTCTTAATAAAAA TATATTCTTTCTTGTCCAGTTTATCATAAAAACACTCATTCTTATCAAATGCGTTATCCATACTGAATTGAATTTTTGGT TAAACTCCATTCTTATAAAATGTTTCATTATTTCCATACTAGTGAATATAGCCAAATAAAAAAATTAACCTGGAATATAT GATGACATATGCCATATATCTTTCGTCTTTTGATGTTTATACATTGGCAAGCACTGAGCTGTTACCTCTTTCGATGTGCA GCAAGATTGAGAAAAAGAGGAAACATCCAATGCCTAACCTTCCTGATGGTTCTGGCTTGGGTGATCACATTCAATTGCTG CAGATATACGAGTGTTGGGATCGAAATGATTATGACATTGGTTGGTGCAAAGACAATGGCTTGCAGGTACTTTTATTTTT CTATGAAATCTGCAATGAAGGCTGGTAATAAACTTGTGGAGTACTTGTCTCCACACATTTGATTCAGATAGTGTTAGTAA CCCAAAAGTAAGAGTTGACAGAATCTAGTATTATTGAATGAAAAGATTAGGAGAGTGATCTCTCCTCCAAGGATTTTCCC TTACAACTGAGCCAATGCTCAGTTTTCCCAAATCTAACTAATCCCCTCCTAGTAACTACTAACTAACTACTACAACAGCC CTAATTACTATAGAATCCCCTTACCAATTTTTCCTTTCTCTTTACATCCTAACAGATAGTTGTATCCTTTATAAATAAAT CTGATGTGTCATTGACAAAGAATTCTGTCATTTCCTGATGAGAATGCATGCTTTCATTGAAGGTGCGGGGGATGTTGTTT GTCAGAGATGTCCGTAAGCAGTTATCTCAGATAATGCAGAAAATAGCAAAGGGTTTGTATTCCAATTTTTTTAAGAATTT ACATGTATCAAGCGAATAATTTGTGTCGTTAACTCATAAACCAACCATTCCAAAACTTAAGCTGTTGAGAGCAGACATGC ATGATTTTATATTATACTTTGAAGTTTTAACAGTGTTCTTTCTCATGCTGTGGTAAATGTTGCTAGCTAAAAGAACTAGC ATCTTGATTTTGGCTACGCATTCATAATATCCTTGTGTAGAATAAGTTAAGTGTGACATTAAAATGGGGCATATTTTATT TGGTACTGTTCTTCTACTACCCCTTCATCTTTCTTGTGTTGATATAAAGCTTGTTTGGGTAATCTGTTTTATGTTTGATA ATATTCATCAATTGTGGTTGGATAAGTATATTTGTTATTAACTATTAATAGATGATTATTTTTGGGGGTTATGATAGTCA ATTTACTTGCCTCAACGTCATTTTGCGAAGATTATCATACAATTCATATTATGTGGTTTGAAAATAAAAGCATCATCACC ACGAGAAGAACTTGTATTTCTTTTTTGTTGTAGACTTTTATAATTTCAAGCTCTACTGATAAAATAATTTTCAGTTATAG AGTTAAAACTTGTAAGGTTACAACTCATTGTGCATGCCTATGTTAGTAAAAAGGTAAAGAAATTTTACTATTTAATAAAA TCTAGCATAGTTAGCTGTTTCCAGTATTGCTGTCCACTTTTTAATAAAGATGTGGGAAAACTTTTAGCTTCCGCTATATT ATTTGAATTATATCAGGCAGTTGCAAGTTTACATCTTCTGGTGAAATTATGATAGCAGTATCCAAAAAAATGGAATAGCA GGCTGAATCACTATTATAATTACTCTCTCCTTTTCTGTTTCTTTTTTTATTTTTTCATTCAAATTAGTGAACCCTTTAGC TATTTATCATGTTACATATGCTAATTCCTATTCCATTCACATATATTTTCTCAAACTGGCAATAGGACCACTGGATATAA GGGCACATGGGAATGGGGATGAGTTCCGGCGGGATTATCGAAATTTGAGGAAGGCTTTATGTGTGGGCTATGCAAATCAG CTGGCTGAAAGAAAGATGCATCATAATGGTTATCGAACTCTAAATTTCCAAGCTCAAGTAGTTCAGGTAATAAAAAGGGC TAGTACTGAAAAGTGAAGGCCTTCTAGGAAATTGTGAAAAGCAAGTAGCTTCTATTTGTCAATTTCAATTTTCAAGTAAG TGCTATGTTTGTAAATACCTGAATTTTCTATGCTAGGTGCATCCATCATCTGTATTGACTGCTGATGATCTGGGGAAGTT CCCAGACTATGTTGTCTACCATGAGCTAGTTGCTACCCCAAAACCGTTTATGAGAAACGTCTGTAGTGTTGACATGAGGT GGACAACAACTGTTATGAACAAGCTTAAGACCCTAGATGTGTACAAATTAAGGTAACTTGCTTGGCATCATAATCTGTGA AAACTTCTCTTTAAAATTTGTGATTTAGTGTTGCAAATGATGTATATTTTGTCTGTAACAGTGGTGGTATTAATCATGCT GAGGAGGAATCTGAGAGGAGTCTACCAGATTTGCCCAAGAAAGATGTCCAGGTTGCTGGTGCTGTCAATGACTCTGAAAG TAGAATCCAAGCTGCTCGAGAGCGATTTCTTGCGCGAAAAGCCAATAA
CDS sequence (LotjaGi4g1v0363900.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACCCTTCCCATCGTCCAATACGAAGAAAAAATCCTCGAAACCGTTGAGGCGAACCCCGTCGTCGTCGTCATCGG AGAAACCGGTTCCGGCAAGAGCACCCAGCTCTCTCAGATGCTACTCCGCCGCGGTTTCTCCAAAATCGCCGTCACTCAAC CCCGTCGAGTCGCCGCCGTCACTGTCGCCAGACGAGTTGCGCAAGAGCTTGATGTTCGCCTCGGTGAGGAAGTAGGTTAC GCCATTCGATTTGAGGATAGAACTTCTCCCACCACGCGCATAAAGTACCTCACTGATGGGGTTCTTCTTCGCGAAAGCCT AGCTAATCCGGAGCTTAATGAGTATGATGTGATCATATTAGACGAAGCTCATGAACGGAGTTTGAACACGGATATTTTGA TGGGCCTTATGAAGCGCTTGGTTAAACTTCGATCTTCCAATCTCAAAGTTTTGATCACGTCGGCGACTCTTGATGGTGAT AAGGTATCAAAGTTCTTTGCAGATTGTCCTGTGTTGAGCATCCCGGGGAAATTGTATCCGGTTGAAATTCTTTATAGCAA GGAGCGTCCCCCAAACTATCTCGAGTCTTGTCTGAAAACAGCTCTTGATATACATACTCGCGAACCAGAAGGGGATATTT TAATATTTATGACTGGACAGGTGCGTGTTTTTAGTCCTCCACCTCCAAATTGCAGACGAATTATTGTTGCAACAAATATT GCTGAAACTTCTCTGACTGTTGATGGTGTAGTATATGTTATTGACTCGGGGTATGTAAAGCAAAGGCAGTACAATCCATC CAGTGGGATGTATTCTCTTGATGTTGTTCAAATTAGCAAAGTGCAAGCTAATCAGCGCGCAGGCCGAGCTGGACGAACAC GACCAGGGAAATGCTACCGTCTATATCCTTCCCGACTTTTCCAAGATGAGTTTTTGGATGTTACAGTACCTGAAATTCAG AGATCTTCTCTCGCCGGCAGTGTGCTTTACTTGAAGTCATTGGACCTCCCTGATATTGACATTCTCAAATTTGACTTTCT TGATCCTCCTTCATCTGAGTCCTTACAAGATGCCTTGAAGCAATTATATCTGATTGATGCTATTGATGAAAATGGTGCAA TTACAAGTATTGGACGAAAAATGGCTGAGCTTCCATTAGAACCATCCCTATCAAGAACTTTAATAGAGGCAAACAATTAT GGTTGCATAACTGAGGCTTTGACTGTTGCTGCCATGTTATCAGCTGAAACTGCATTGCTACCAGGGCAGAGAAAAAGAGG AAACATCCAATGCCTAACCTTCCTGATGGTTCTGGCTTGGGTGATCACATTCAATTGCTGCAGATATACGAGTGTTGGGA TCGAAATGATTATGACATTGGTTGGTGCAAAGACAATGGCTTGCAGGTGCGGGGGATGTTGTTTGTCAGAGATGTCCGTA AGCAGTTATCTCAGATAA
Protein sequence (LotjaGi4g1v0363900.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLPIVQYEEKILETVEANPVVVVIGETGSGKSTQLSQMLLRRGFSKIAVTQPRRVAAVTVARRVAQELDVRLGEEVGY AIRFEDRTSPTTRIKYLTDGVLLRESLANPELNEYDVIILDEAHERSLNTDILMGLMKRLVKLRSSNLKVLITSATLDGD KVSKFFADCPVLSIPGKLYPVEILYSKERPPNYLESCLKTALDIHTREPEGDILIFMTGQVRVFSPPPPNCRRIIVATNI AETSLTVDGVVYVIDSGYVKQRQYNPSSGMYSLDVVQISKVQANQRAGRAGRTRPGKCYRLYPSRLFQDEFLDVTVPEIQ RSSLAGSVLYLKSLDLPDIDILKFDFLDPPSSESLQDALKQLYLIDAIDENGAITSIGRKMAELPLEPSLSRTLIEANNY GCITEALTVAAMLSAETALLPGQRKRGNIQCLTFLMVLAWVITFNCCRYTSVGIEMIMTLVGAKTMACRCGGCCLSEMSV SSYLR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 177 | 177 | 2.8E-77 | – | |
| SMART | 2 | 184 | 183 | 7.4E-26 | ||
| CDD | 4 | 174 | 171 | 3.03656E-81 | – | |
| PANTHER | 5 | 425 | 421 | 4.4E-193 | – | |
| PANTHER | 5 | 425 | 421 | 4.4E-193 | – | |
| SUPERFAMILY | 8 | 416 | 409 | 7.45E-91 | ||
| Pfam | 12 | 164 | 153 | 1.9E-7 | ||
| ProSiteProfiles | 14 | 175 | 162 | 18.255 | ||
| ProSiteProfiles | 161 | 335 | 175 | 11.355 | ||
| Gene3D | 178 | 221 | 44 | 2.4E-9 | – | |
| CDD | 179 | 302 | 124 | 1.48461E-62 | – | |
| SMART | 192 | 294 | 103 | 1.1E-8 | ||
| Gene3D | 222 | 314 | 93 | 8.7E-41 | – | |
| Pfam | 223 | 293 | 71 | 1.1E-6 | ||
| Gene3D | 340 | 433 | 94 | 1.0E-24 | – | |
| SMART | 357 | 435 | 79 | 8.3E-16 | ||
| Pfam | 358 | 424 | 67 | 4.5E-19 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Helicase activity | Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0363900.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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