Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0364100 |
| Transcript ID | LotjaGi4g1v0364100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | U-box domain-containing family protein; TAIR: AT1G24330.1 ARM repeat superfamily protein; Swiss-Prot: sp|O48700|PUB6_ARATH U-box domain-containing protein 6; TrEMBL-Plants: tr|I1KS03|I1KS03_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0364100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74408283..74413193) extracted from Lotus japonicus Gifu genome v1.2.
ACATCACAACAACAATAATTAATAATTGCTCTTCCTCCTCCTCCACAAACCCCTCTCCATCCCAAAAATAAAAATAACTG ACACTTCATCATTTAACTGAACCTAGTTATTATTTAACCAATTTCCCATCTTCATTATAACTATTATTATTATTATTTCT TTTTCTTTCTTACAAAATTTTCAGCTCTAGAACTAGAACTAGAGAAGAAGAATAAACCAAGGAACAAATCTGCATCTTCT CTTCTCTCTTCCTCCTCACAAAACAAAACTATAGATCTATCTTCCTAACCCTAACTCTGCAACTCTCTCATTTTCTCTCT TCATGAAGCCTCCCTGGTTGTGATTTTCCATTTTTCTTGGTATGTCTTCTTTGCTTCAAACCCTAATCCTTCAACGCGTT TCAACCTCTCCTGTATTTTGCTTGAATCACGAACTGTTATGCTGAAAAACGTGTTTGATTTGATTCAATTGATGTATCTT TTAAATCGATTTTCCACCTTCAATGGATTATTCGATGGTGTTGTCTTCTATTTTTGGAATATTTTTCGCTTACACAGCCT GTATTGAAGATTTAGAACCGTGTTGCATCTGTTCATTTTTTTTGAAATTAAATTCAATGCATAAATGGAAAATTTTACTC ATTAGATGACATGAGATTTGTTGATTGGCATGTAAAAATTATTTCAAGCTCACTGAATTTTGCTTGATTTTCCCCTTTGC TAGTTTTGTTTATTTTCTCTGTTTGATTCTGTAGGTTGTGCGTAAAATAGTTGAGATTAGTTTATACGCGGTGAATGAGA ATGATGGATGCAGCTGAAGTTGAAGAAAATCTGTTTGCTGCTAGTGATGCCAAGGTAATTGATTAATATATATGTTTAAT TTTATTACATGTTCAATTCTCTGTTATGTAATCTAACCAATATGTATGTGTTTTGTTTTGCAGTTACATGGACAAATGTG CAAGGCTCTTTCTATAATATATTGCAAAGTGTTGTCGATATTTCCTTCCGTAGAAGCGGCGAGGCCTCGGAGTAAAACTG GAATTCAGGCACTGTGTTCGTTACACGTAGCTTTAGAGAAAGCTAAGACTGTTCTTCAACACTGCTCAGAATGCAGTAAA CTTTATTTGGTATGATTAATTTCTTCTTTTGTTTTATTTTCTGGTTATGCAGTGTAGAAGGTTTTTAATTTTATTTTAGC TTGGCTCATTGAACAGCTACTTGTTGTTGCCTTGTTGGATGGTGAAGTTATTCGACCTGAAATACATTTTGTAGAATCTT GGATTAGATTTATAACATCAATTTATCATGCAGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATG TGCGCTTGAAGATAGTCTTAGACGGGTCGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTAATAAACTTCAATGTTA TGGCTCTGTAGTTCATTGTCAATGTTTGACCTTGTCTGAGGTTTGACTCATTACGTGTTCAGGTTCAGGAGATTGTGAAT GAATTTGAGTGTGTGGAATTTGCACTTGATCCATCAGAGAAGCAAGTTGGCGATGATTTGATTGCATTGCTCCAGCAGGG GAGAAAGTTTAATGACTCTAATGAAAGTAATGAGCTTGAATCTTTTCACCAGGCTGCTACAAGACTTGGAATCACATCTT CAAGAGCAGCTCTTACCGAAAGAAGGGCTCTCAAGAAACTTCTAGAAAAGGCTCGGTCTGAGGAAGACAAGCGGAAGGAA TCAATTGTTGCATATCTTTTTCATCTTATGAGGAAATACTCGAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTC TCAAGGTTCTGCACCTTGTTCTCCCACTGTTCAAGGATCTATTGAGGACGGTGTTCCTGGTGGTCATGGCCAGGCTTTTG ACAGACAATTTTCAAAACTTAGTTCCTTTAACTTCAAGGCAGATAATAATAGGGAATCAGGGCAGATGCCTTTTCCACCT GAAGAGTTAAGGTGTCCAATATCTCTGCAACTCATGTATGATCCTGTTATCATTGCTTCTGGGCAAACTTATGAAAGGGT TTGCATAGAGAAATGGTTCAGTGATGGGCATAACACGTGCCCAAAGACCCAACAAAAACTTCAACATCTTTGTTTGACTC CTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGTGTTCCTATTCCTGAAGGGCCTCCTGAATCT CTTGATCTTAACTACTGGAGATTAGTATTATCCGGGTCTGAATCTACAAATTCAAGATCTGTAAATAGTGTCAACTCTTA CAAGTCGAAAGGTGTCAAAGTGGTTCCTCTAGAAGAGAGTGGTATCTTAGAGGAATCTGGGGGAAATGGAACTGAAATTG TGTCTGCACAAGAGGAAGATACTGAGCAGCAGTATTTTAGTTTTCTAAAAGTCTTGACTCGGGGGAACAATTGGAAGAGG AAATGTGAAGTGGTGGAACAGTTAAGGTTGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGAGCTAATGGGTT TGTTGAAGCCCTTTTGCAGTTCTTACAATCAGCTGTGCATGAAGGAAACTTGATGGCTCAGGAAATTGGAGCAATGGCTC TCTTCAACCTTGCTGTGAATAACAACGGGTATGCACTGTGTTATATTTTCTAGCTTTTTAGGTGCTGAATCATGAATTGA AACTGATAATCATATGATTGAAAAATCAAAACAGTTCTTGATGTTTAAAAATTGACACCTTGCGTTTTAGCCGAAGTCTT ATCTTCATGATCTCTTATTAAGATAATCATCTTTAATTAAAAATTCATCATTATCTCAAAGATCTGGTCAGTGGTAATGC TCTAGCTCTTCAAGATCATTGGCATATCTTATGCCTTTGTGTTTTTTTGTTTGGCCTTCTTCATTTCACAAAAAAAAGAC AGCAGCCTATTTCCTGAAAATTCGTTTATAGCCTACATTCAAAATAGATTACACAATGTGTCTATGCCTCTATGGTTTTA CTGACGCATCTGATGATCCAATAGTGCCCCCCCCCCACACACACACACCAAAGCTGATCACTAATACATTGAATGTATTC GCACAACTTTATTCAGTATTGAGGCCCTGGTTCTTCATTGGAATATTTAAACAGAGAAAATTTTGTTTGTTCAGTTACTG TGTTTTTCAATAATAGATGTGGCTGAAGTTCCCCAAGATGTAATATAGTTGGTTCATCAACTCTTTCTGAGTTGACATGA TCTTAATAATTTTTAACGTTTGTGCACATCATTAACTTGAATTTGATCTCTTATACTTTTCAACAGGAATAAGGAAATGA TGTTATCAGCTGGAGTATTGCCAGTGTTGGAGGAAATGATTTCTAACACTAGTTCTTATGGTTCTGCAACCGCTCTATAT CTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGTACGAGTCAGGCTGTACAGTTCCTCACCCAGCTTCTTCA ATCTGACTCTGATATTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAACCTTTCTACCGTGTCTACCAATATCCCAT ACCTCCTTTCATCCGGCATTATCAATGGCCTGCAATCCCTTCTTGTAGATCAGGGTGATTGCGTGTGGACAGAAAAATGC ATAGCTGTTCTGATAAACTTAGCTACTTCTCAAGCTGGAAGGGAGGAAATGGTATCAGCTCCTGGACTCATCAGCGCATT GGCTTCCATATTGGACATTGGTGAGCTCATAGTGCAGGAGCAAGCAGCCTCTTGTCTTCTTATTTTGTGCAACAGAAGCG AGAAATGTTGCGAGATGGTCCTGCAAGAAGGGGTTATCCCTGCACTGGTGTCAATATCAGTGAATGGGACCCCAAGAGGA AGGGAGAAAGCTCAGAAACTCTTGATGCTTTTCCGGGAGCAGCGACAACGAGACCATTCGCCAGTCGAGACTCATCAGTC CCCACCTGAAACTGGTGATTTGTCTGTGCCGCCTGCTGAGATGAAACCGTTATGCAAGTCCATGTCTAGAAGAAAGACAA TGAAAGGTTTTGGCTTTTTCTGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAAGTCTCATGGTTGTAAATCTCTCTC TCCCTCTCTCTCAGCATCTTTACATTTATGACCATGCTTTTGTCCTCCTCCTCTCTCTTTTCCCGTGGGTGCTACTTACC TTTTTTGGTTTACAAAGCGAAGAAGAAATGTACAGGCCTTTGTAATTTATGGATTTTGTTTTTCTTCTTTCGCTTTCCTC CTTGTAATATCAATCTCTCCAAAGTGTTATCTTTTCCTTTCTTTTTCACGGAAAGAGTGAGGATTTTTGAGGTTATAGTA AATGTGAATTATGTTCATTCGGGTGTTCCTTTGGTGAATGAGGCAAGGCAAATTGTGTTTGGATGTAAGTAAGGTGTAAC ATAAAAAGACTTTCTCACAACTGATCACAAGAGTTCTAATCATTTTTTGATTTGAAGTGTTTGTTGTTTGTTTATACCGC AGCTACCAACTGATATTCAAACACAATCTAACCTGAATATGCAAGTTTGTATGAGGTTTGGGGAAAATTATACTCAATTT TATTTTGTAAAAAATGTATGGGAAGAAAAGACTTGTTTTGTTAAGTTTTTCACTTTTATTACATTTTTCTGTATCTTTTT TTATAATTAAATAAAAAAGAAAGTGGACTGGAGATGAATTCCAGCAAGGTTTTTTAATCCTTATGAGATAATATTATCAT ACTTTTTATGAATTTACCCGAACCTGTCTCATCCTTAGTGGCGAGTCAAGCTGTTAAGAAGCTAGCACAAGTCGCATTCA CCAAAAAAGGTTTCTACTTTTTTATTAGCGG
CDS sequence (LotjaGi4g1v0364100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATGATGGATGCAGCTGAAGTTGAAGAAAATCTGTTTGCTGCTAGTGATGCCAAGTTACATGGACAAATGTGCAA GGCTCTTTCTATAATATATTGCAAAGTGTTGTCGATATTTCCTTCCGTAGAAGCGGCGAGGCCTCGGAGTAAAACTGGAA TTCAGGCACTGTGTTCGTTACACGTAGCTTTAGAGAAAGCTAAGACTGTTCTTCAACACTGCTCAGAATGCAGTAAACTT TATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCGCTTGAAGATAGTCTTAGACGGGT CGAAGATATTGTTCCACAATCTATTGGGTGTCAGGTTCAGGAGATTGTGAATGAATTTGAGTGTGTGGAATTTGCACTTG ATCCATCAGAGAAGCAAGTTGGCGATGATTTGATTGCATTGCTCCAGCAGGGGAGAAAGTTTAATGACTCTAATGAAAGT AATGAGCTTGAATCTTTTCACCAGGCTGCTACAAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACCGAAAGAAGGGC TCTCAAGAAACTTCTAGAAAAGGCTCGGTCTGAGGAAGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTTCATCTTA TGAGGAAATACTCGAAGTTATTTAGAAACGAGTTCTCAGATGACAATGATTCTCAAGGTTCTGCACCTTGTTCTCCCACT GTTCAAGGATCTATTGAGGACGGTGTTCCTGGTGGTCATGGCCAGGCTTTTGACAGACAATTTTCAAAACTTAGTTCCTT TAACTTCAAGGCAGATAATAATAGGGAATCAGGGCAGATGCCTTTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGC AACTCATGTATGATCCTGTTATCATTGCTTCTGGGCAAACTTATGAAAGGGTTTGCATAGAGAAATGGTTCAGTGATGGG CATAACACGTGCCCAAAGACCCAACAAAAACTTCAACATCTTTGTTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGC TAGTTGGTGTGAACAAAATGGTGTTCCTATTCCTGAAGGGCCTCCTGAATCTCTTGATCTTAACTACTGGAGATTAGTAT TATCCGGGTCTGAATCTACAAATTCAAGATCTGTAAATAGTGTCAACTCTTACAAGTCGAAAGGTGTCAAAGTGGTTCCT CTAGAAGAGAGTGGTATCTTAGAGGAATCTGGGGGAAATGGAACTGAAATTGTGTCTGCACAAGAGGAAGATACTGAGCA GCAGTATTTTAGTTTTCTAAAAGTCTTGACTCGGGGGAACAATTGGAAGAGGAAATGTGAAGTGGTGGAACAGTTAAGGT TGTTGCTGAGGGATGATGAGGAAGCCAGGATTTTTATGGGAGCTAATGGGTTTGTTGAAGCCCTTTTGCAGTTCTTACAA TCAGCTGTGCATGAAGGAAACTTGATGGCTCAGGAAATTGGAGCAATGGCTCTCTTCAACCTTGCTGTGAATAACAACGG GAATAAGGAAATGATGTTATCAGCTGGAGTATTGCCAGTGTTGGAGGAAATGATTTCTAACACTAGTTCTTATGGTTCTG CAACCGCTCTATATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGTACGAGTCAGGCTGTACAGTTCCTC ACCCAGCTTCTTCAATCTGACTCTGATATTCAATGCAAGCAAGATTCTCTCCATGCTCTCTATAACCTTTCTACCGTGTC TACCAATATCCCATACCTCCTTTCATCCGGCATTATCAATGGCCTGCAATCCCTTCTTGTAGATCAGGGTGATTGCGTGT GGACAGAAAAATGCATAGCTGTTCTGATAAACTTAGCTACTTCTCAAGCTGGAAGGGAGGAAATGGTATCAGCTCCTGGA CTCATCAGCGCATTGGCTTCCATATTGGACATTGGTGAGCTCATAGTGCAGGAGCAAGCAGCCTCTTGTCTTCTTATTTT GTGCAACAGAAGCGAGAAATGTTGCGAGATGGTCCTGCAAGAAGGGGTTATCCCTGCACTGGTGTCAATATCAGTGAATG GGACCCCAAGAGGAAGGGAGAAAGCTCAGAAACTCTTGATGCTTTTCCGGGAGCAGCGACAACGAGACCATTCGCCAGTC GAGACTCATCAGTCCCCACCTGAAACTGGTGATTTGTCTGTGCCGCCTGCTGAGATGAAACCGTTATGCAAGTCCATGTC TAGAAGAAAGACAATGAAAGGTTTTGGCTTTTTCTGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAA
Protein sequence (LotjaGi4g1v0364100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMMDAAEVEENLFAASDAKLHGQMCKALSIIYCKVLSIFPSVEAARPRSKTGIQALCSLHVALEKAKTVLQHCSECSKL YLAITGDSVLLKFEKAKCALEDSLRRVEDIVPQSIGCQVQEIVNEFECVEFALDPSEKQVGDDLIALLQQGRKFNDSNES NELESFHQAATRLGITSSRAALTERRALKKLLEKARSEEDKRKESIVAYLFHLMRKYSKLFRNEFSDDNDSQGSAPCSPT VQGSIEDGVPGGHGQAFDRQFSKLSSFNFKADNNRESGQMPFPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFSDG HNTCPKTQQKLQHLCLTPNYCVKGLVASWCEQNGVPIPEGPPESLDLNYWRLVLSGSESTNSRSVNSVNSYKSKGVKVVP LEESGILEESGGNGTEIVSAQEEDTEQQYFSFLKVLTRGNNWKRKCEVVEQLRLLLRDDEEARIFMGANGFVEALLQFLQ SAVHEGNLMAQEIGAMALFNLAVNNNGNKEMMLSAGVLPVLEEMISNTSSYGSATALYLNLSCLEEAKPMIGTSQAVQFL TQLLQSDSDIQCKQDSLHALYNLSTVSTNIPYLLSSGIINGLQSLLVDQGDCVWTEKCIAVLINLATSQAGREEMVSAPG LISALASILDIGELIVQEQAASCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTPRGREKAQKLLMLFREQRQRDHSPV ETHQSPPETGDLSVPPAEMKPLCKSMSRRKTMKGFGFFWKTKSYSVYQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 13 | 729 | 717 | 0.0 | – | |
| PANTHER | 13 | 729 | 717 | 0.0 | – | |
| Coils | 178 | 198 | 21 | - | – | |
| SUPERFAMILY | 275 | 358 | 84 | 1.0E-28 | – | |
| ProSiteProfiles | 282 | 356 | 75 | 40.232 | ||
| Gene3D | 283 | 356 | 74 | 2.6E-27 | ||
| Pfam | 284 | 353 | 70 | 2.5E-18 | ||
| SMART | 286 | 349 | 64 | 3.2E-32 | ||
| CDD | 287 | 329 | 43 | 2.9767E-26 | – | |
| Gene3D | 416 | 717 | 302 | 3.0E-33 | ||
| SUPERFAMILY | 431 | 709 | 279 | 1.46E-33 | ||
| SMART | 459 | 503 | 45 | 3.6 | ||
| Pfam | 466 | 606 | 141 | 8.8E-5 | – | |
| ProSiteProfiles | 470 | 516 | 47 | 9.397 | ||
| SMART | 505 | 543 | 39 | 160.0 | ||
| SMART | 544 | 585 | 42 | 5.3 | ||
| SMART | 628 | 669 | 42 | 49.0 | ||
| MobiDBLite | 715 | 737 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0364100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…