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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0364300 |
| Transcript ID | LotjaGi4g1v0364300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein; TAIR: AT1G67480.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q9CAG8|FBK28_ARATH F-box/kelch-repeat protein At1g67480; TrEMBL-Plants: tr|I1KS09|I1KS09_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0364300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74429869..74431521) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCTGGTTTTGTTGCTGGCAAAAAGAGGTTTACAGATCCAAACATGTGTTTTTCCAATTTCGCCAATAAGGATAAATC CACTTTTTCAAAAAGCAATCATTGTTTAAGGTCTGAGGTGGATCCGGATGACGACGATGGTAACCCCATTCTTCCAGGGC TGCCTGATGATGTTTCAAAACATTGCCTCGCACTTGTGCCGCGTTCTAACTTCCCAACTATGGGCGGTGTCTGTAAGAAA TGGAGGCGCTTTATTCAAAGTAAAGAGTTCCTAACCGTGCGAAAATTAGCCGGGCAGGTTGAGGAATGGCTGTATATCTT AATAGCTGGTAGTGAAGGAAAAGGAAGTCACTGGGAGGTTATGGATTGTCTGGGTCATAATCGCCGATCTCTTCCACCAA TGCCTGGTCCAGACAAGACTGGATTCGGGGTTGTTGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGCTATGCATCAATT GATGGAATTGTGTCTGTCTCAGCTGAGGTTTACCAATATAATTCTTGCCTCAACAGGTATGCTTTTCTGCTGCAATTTAC CTGAAACCATTGGTAACTTATTACACATATGGCTATGTTATTGATTTAATGGAAGACCTATTCATAATTTATGAAACTTT ATTTCATTGTTATTAGATAAATAATCTGTGTAAATGGATAAAGTTGTAGGACTTTGTCAATGGTCACCACTCACCACTAT TCTAATTTAGATATATATTCTATTGTTACCATAGGTGGATTTGGGTACAAGAGAAACTATATCTCTACTGAGATTACGAT ATATATCTGATATGTAATTAGGAAACTATGTAATTAAGATTAGACTATCAAATTTAATCTTAATTATATAGTTTCCTGAT TACATATCAGATGTATTTCTTAATCTGGTAGAGATATAGTTTCTCTTATACCATGATCCTCTCCTATAGCTACTCTATTA TATTGCTTTTGGGAATGGAACTATCATTACACTGGTATATGAAAAGTTTGTAATTGCAATTGCAGCTGGACCAGATTGCC AAACATGAACGTGGCTCGGTACGACTTTGCTTGTGCTGAAGTCAACGGCTTGGTTTACGCAGTAGGAGGCTACGGGGAAC ATGGAGACAGTCTCTCCAGTGCTGAGGTGTATGACCCTGATACCGACAAATGGACGCTGATTGAGAGCCTCCGGCGCCCA AGATGGGGCTGTTTCGCCTGTGGAATCGAGGGGAAGCTTTATGTCATGGGTGGAAGGTCAAGCTTCACAATTGGAAACTC CAAGTTTGTTGATGTCTACAACCCGGAGAAGCAGGGGTGGTGCGAGATGAAAAACGGCTGTGTCATGGTCACTGCTCACG CAGTCCTTGAGAAGAAGCTGTTTTGCATGGAGTGGAAGAACCAGAGGAAGTTAGCAATATTCAATCCTGAAGACAATTCA TGGAAAATGGTACCTGTCCCTTTGACAGGGAGTACTAGTATTGGATTCAGATTTGGGATACTTGATGGTAAGCTTTTGTT GTTCTCACTAGAGGATGAACCTGCATACAAGACTTTGTTGTATGATCCAAATGCAGCCCCGGGGAAAGAATGGAGAACTT CTGAGATAAAACCATCTGGTTTGTGCTTGTGCAGTGTTACTATCAAGGCCTGA
CDS sequence (LotjaGi4g1v0364300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTGGTTTTGTTGCTGGCAAAAAGAGGTTTACAGATCCAAACATGTGTTTTTCCAATTTCGCCAATAAGGATAAATC CACTTTTTCAAAAAGCAATCATTGTTTAAGGTCTGAGGTGGATCCGGATGACGACGATGGTAACCCCATTCTTCCAGGGC TGCCTGATGATGTTTCAAAACATTGCCTCGCACTTGTGCCGCGTTCTAACTTCCCAACTATGGGCGGTGTCTGTAAGAAA TGGAGGCGCTTTATTCAAAGTAAAGAGTTCCTAACCGTGCGAAAATTAGCCGGGCAGGTTGAGGAATGGCTGTATATCTT AATAGCTGGTAGTGAAGGAAAAGGAAGTCACTGGGAGGTTATGGATTGTCTGGGTCATAATCGCCGATCTCTTCCACCAA TGCCTGGTCCAGACAAGACTGGATTCGGGGTTGTTGTTCTTAATGGAAAGCTTCTTGTTATGGCTGGCTATGCATCAATT GATGGAATTGTGTCTGTCTCAGCTGAGGTTTACCAATATAATTCTTGCCTCAACAGCTGGACCAGATTGCCAAACATGAA CGTGGCTCGGTACGACTTTGCTTGTGCTGAAGTCAACGGCTTGGTTTACGCAGTAGGAGGCTACGGGGAACATGGAGACA GTCTCTCCAGTGCTGAGGTGTATGACCCTGATACCGACAAATGGACGCTGATTGAGAGCCTCCGGCGCCCAAGATGGGGC TGTTTCGCCTGTGGAATCGAGGGGAAGCTTTATGTCATGGGTGGAAGGTCAAGCTTCACAATTGGAAACTCCAAGTTTGT TGATGTCTACAACCCGGAGAAGCAGGGGTGGTGCGAGATGAAAAACGGCTGTGTCATGGTCACTGCTCACGCAGTCCTTG AGAAGAAGCTGTTTTGCATGGAGTGGAAGAACCAGAGGAAGTTAGCAATATTCAATCCTGAAGACAATTCATGGAAAATG GTACCTGTCCCTTTGACAGGGAGTACTAGTATTGGATTCAGATTTGGGATACTTGATGGTAAGCTTTTGTTGTTCTCACT AGAGGATGAACCTGCATACAAGACTTTGTTGTATGATCCAAATGCAGCCCCGGGGAAAGAATGGAGAACTTCTGAGATAA AACCATCTGGTTTGTGCTTGTGCAGTGTTACTATCAAGGCCTGA
Protein sequence (LotjaGi4g1v0364300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPGFVAGKKRFTDPNMCFSNFANKDKSTFSKSNHCLRSEVDPDDDDGNPILPGLPDDVSKHCLALVPRSNFPTMGGVCKK WRRFIQSKEFLTVRKLAGQVEEWLYILIAGSEGKGSHWEVMDCLGHNRRSLPPMPGPDKTGFGVVVLNGKLLVMAGYASI DGIVSVSAEVYQYNSCLNSWTRLPNMNVARYDFACAEVNGLVYAVGGYGEHGDSLSSAEVYDPDTDKWTLIESLRRPRWG CFACGIEGKLYVMGGRSSFTIGNSKFVDVYNPEKQGWCEMKNGCVMVTAHAVLEKKLFCMEWKNQRKLAIFNPEDNSWKM VPVPLTGSTSIGFRFGILDGKLLLFSLEDEPAYKTLLYDPNAAPGKEWRTSEIKPSGLCLCSVTIKA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 16 | 387 | 372 | 8.2E-222 | – | |
| PANTHER | 16 | 387 | 372 | 8.2E-222 | – | |
| SUPERFAMILY | 48 | 91 | 44 | 1.31E-5 | ||
| Pfam | 51 | 90 | 40 | 1.3E-5 | ||
| SMART | 54 | 94 | 41 | 0.0015 | ||
| Gene3D | 97 | 332 | 236 | 2.6E-44 | ||
| SUPERFAMILY | 101 | 354 | 254 | 3.14E-51 | ||
| Pfam | 140 | 187 | 48 | 2.4E-8 | ||
| SMART | 150 | 200 | 51 | 1.0E-4 | ||
| Pfam | 189 | 234 | 46 | 1.3E-13 | ||
| SMART | 201 | 248 | 48 | 5.1E-9 | ||
| Pfam | 238 | 281 | 44 | 1.0E-5 | ||
| SMART | 249 | 297 | 49 | 9.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0364300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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