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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0366500 |
| Transcript ID | LotjaGi4g1v0366500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD-repeat protein, putative; TAIR: AT2G19540.1 Transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54ED4|GRWD1_DICDI Glutamate-rich WD repeat-containing protein 1; TrEMBL-Plants: tr|V7B033|V7B033_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0366500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74621538..74626515) extracted from Lotus japonicus Gifu genome v1.2.
ATGACTCGCGGCATAAAACATCGAATGAAGGCCAAGAGCAAGAACAAGGTATCATCCTGTGGCCTAGTCAACCCCTTCTA TGACCTCACTTCATTTGGGTTTTTTGTGGATGCCTCTCATTTTTTTTATAATTAAAATAATACTAAAATCCAGGGATCGA AGAAAGGGGATGGGACTTCTTCATCTTCTCTGGAGCCGCAAATTCCAGTGAAGGTGTGGCAGCCGGGTGTGGACAAGATG GAGGATGATGAAGAGCTCCAGTGTGATCCTTCTGCTTACAATTCTCTTCATGCTTTTCACATTGGATGGCCCTGTCTGAG GTAGGTTCTATGGTTTTTTTCTTCTTTTCCCTTCATTTGTTATTTTTTCCTGTTTGGCACTCCAGAAAGAGAAAAATATG AACAAGTTGGAGCTTTTTTTTATAAACAAAACCCCTTTTCGGATTGCCATTAGTGTTAGTAATATGACCATACAGTTTTT CATTAGAGTTAATTCCTTTGGCGTCAGCAATTCAATTCAATTGGAGAATCTTGGCCACCCTGTACTTGATTTTATTTCTG CTTCGTATCAATGGCTTTCAGCTTTTAAGTATGTTTTTGGACTTTTACAGCTTTGATGTTGTACGCGACACTTTGGGCTT AGTTCGAACAGAGTTTCCCCACACTGTGTATTTCATGGCAGGGACTCAGGTTAGCTTTGTGTCATATATATTGTCCTCTT TTTCTCTGTGAGGAGGTTTCATTTATCGACTTGGAGGTTTTTACTATTCATTAGCAATATCTAATGGGGTAACAAAGAAG TTGATATTGGGCTTTGTAGACAATTATATGGGAGAAAATTTCCCTTGGATGGACAATTGAGTTTTAAATGCAGATTTATT ATTTCTTATTCTAATAACTAACAATTATTAGAATATAAAATTAAGGCTTAGCATCTCCTAGTTACTCTATCCAGGAGAAA TAATTCCTTCATAGGACTTTTGGAGTCTGAATGCATTATTTTTGTTATAAGTAGCAATGATCACAACAAACAGTTACTAT CTCCTAATTGTGTGATCCACTAGTATTGCTCTTCTGTCCTTTTCCTAATTACTTCTTTTGATTGGCAATATCATATATAT TGTGATGGTGCATGTGCTACAGGCAGAGAAAGCTTCATGGAATTCAATTGGAATTTTTAAAGTATCAAAAATATCTGGTA AGAGACGTGAATTAGTGCCCAAACTTGAAGCTGATGACTCTGGAGTGGATGGTGAGGATAGTGATAGTGAGGATGATAGT GAAGATGAAGATGAAGATGGTGCTCAGGGTCCCACTTTGCAGGTAACATTCTCTTCATTTGAGTTTTTGTTAATTCACTT GAATGTTTTGAATTAGATCTGACTAACATTTTCCTTCGGTTCACATCTACAGTTGCGAAAGGTAACTCACGAAGGATGTG TCAACCGTATACGTTCCATGACACAAAATCCCCATATATGTGCAACTTGGGCAGATACCGGTCATGTGCAGGTCAGACTT TTCACCCATGATTTAATTTTTTAATTTAGGGTAAATTTTGAGAACGTCTTCCCAAGTTTTTGGAATTAATAACTAGTGCA AAGTCATGTGATATGACTTTGTTAAATTCTAAGTTGTCAATTCCGGCGGGATCTCGGGTTTGCATCCCATCCCAGCCATG CCCTGGGGCGGAATTTCCCATCCCAGCCCAGTTCACTGTCCCCAGCCATCCCAGCAGGATAGTGAATGGCCTAGTTTTCC AAAAATGCCGTAAGATAAGCTCAAATAAGCTCTTCCAAACGGAGACTAGAGGATAGATGAAAAAACTAAAAAGGAAATAA GCTCAATGTTGCAGAGATGAGATGTTACAGTGGATCAGTGGACTCACAGAATAAGATAGGATTAGAAATGATACTATTAG TGAGGAGGTGGGGGTGGCACTTGTTGTGAAAAGGTGGTAGAATCCTGTCTTAGACAGTTTGTTATGCATGGAGAAGATAT TTAGAAACCACCCTGGTAAGGAGAATAGATATGATGGAGGACAGTCCAATTGTTATTGGTAGAGACCAGAAAAACAGGCC CAACAAATTAAGAAGGATTTAGATAAATGGTCTGTCTGTGGACATGCTTTGCCGCGCCTTACAATAGGACATTTTGGCAT TGTTTGATTTATCTAGTCGATCTCATGTACTGGAAAAGGCTTTTGTTCTTTGTTGTATATGCTTAACGTGGTTATGGCAG TATGTGTTATTTTAACCAGAGAGATGAGCATTTGTAATAAGGTTAGATTATTGTACGCATGATTCCTTAAATGAGAAATC TTTGCTCATGGAATTTGAGCATGATGCTGTTAATGTATTACGTCTGGGAGTTTGAGGATGCCGGCAAAATTGTATCAAGT CATTTCAACCGATCTACTGTTCCCTTTAGGGGGGGGGGTCTGTCTAGGATTGGGAAGTTATGATTGATGGACAAAAAAGG CACAAAGACATTTTCATTTTCAGGTTGGGACTCTAAAGCACAAAGCTAGAATGTATAAGATCAATAACATTATGACAGTT GGTTAGTGTCTGTGTCATGCTCTTACAATAGCCTTTTTCTGAGGCTCTATAACAGTTCATGTCAGACATAAAAGCTAGAA ACGAGTTGGATTAGATATGATACATTCCAGCTCCAGATATGGTTTACTGTTAGATACAAATGTGGTTGTTCTGTCCTAAG TATTCCGACATACTTAAACTTCGTAAAATTCTTAATGATATGCAGCAGCTAAGGCTAAGGATTGCATATTTTTATTTTTC TGCGTCATTCTTTCAACAGAGAAGTTAAATTCCACTTCATTCTTGCTCTAAGTCATTTCTTTATTTTGTATATAGTCTGA TATTTGAGTAATCAATTTGTAGATCTGGGACATGAGCTCTCATCTCAATTCTCTAGCAGAGACAGAAACAGGTGCCCAAG GAGTTGCTGCTGTTTTTAATCAGGTCCCACTACATAAATTTAAGCACAAAGATGAAGGATATGCTATAGACTGGAGTCCT GTTGTTCCTGGAAGGCTTGTATCTGGTAATCTTAGGGTAATTTTGTTTCAGTTTAGCTATATTCTTCTCTAGCCAGTAGC CTGTCTTCATATTTGTTATCAAGAGGTATGAAAGTTGATGGTGATCTTCTTTTTTGAAGGGGATTGTAATAATTGTATCT ATCTGTGGGAGCCCACATCTGCTGCAACATGGAATATTGACAACGCTCCATTTATCGGACATACTGCTAGTGTTGAAGAT CTGCAAGTATGTTTTAATGCACATCGCCCTAGTTGACTTTCTTGTGGTTTTGAGTCATATTTTGTGTAGTCCAATCTCTA ATATAAGTAGTTACATGCTATTTATAAACTATTGAGAATTATATTGTTCATTATATCCCTGCAGTGGAGCCCTACAGAAG ATCATGTTTTTGCTTCTTGTTCTGTGGATGGAAGCATTGCAATATGGGATACCCGTCTGGGGAAGTCGCCAGCTGCGTTT TTTAAAGCACATAAAGCAGATGTGAATGTATTGTCATGGAACAGGTATTAAAACATTAACTTGATGTTGTTCTGTCAACT TCATTGCCATTCTATATCTCTTTCTCACTTTTTACTTCATTGTACTGAGTAGGTTGGCTCCCTGTATGTTGGCCTCGGGG AGTGACGATGGGACTATTTCAATTCGTGATCTCAGATTGCTCAAGGTATGAATAGCCTGACTTTAGTCGTGAATATCCGG CTCCTCCCCATATTGAAAGACCGATATGAAGAGCGAAAATTATCATGCGTCATTTATAACTAAAGATTCATGTGTTCATC GTGCATGTGATGTTTTCTGACGTCAACGGTGTGTTTCATGTTATGTCATATCTGGCTTCAATTTTCTGATCATTCTTTTT CCATCATTTCCCAAATCCCAATATCATATTAGATCACTATTTGTAAATTCATCTGAGATCACTATATTCACTCTTATGTC ATCATTTTATCCTATTCGTATGTTCCATTTATATCTGCTAATCAAATGCAAATTGGAGAAGAACTATTATGGCATTACTA TGTTTTAAAAAGATTTTTTTACATTGTCTGATCTCTTGCCGCTAATTCTTTTGATATTAAAGCTGATGTGAAAAGTGCAT TAATTTGTGGATAGGAAGGAGATTCGGTGGTAGCACATTTTGAATACCATAAGCGCTCAATCACATCCATTGAGTGGAGT CCACATGAAGCCTCTTCATTGGCTGTTTCATCAGAAGATAATCAGCTCACGTAAGCAATTAAGATATTGATATCGTTCAA CTCTTTGTAGAATATCATTAGTCAAAATTAAAGCAATTTTAGGATTATATTTTGCTTTTATTTTATTATTATATCTGTTT AACTCTTCCCTGAACCCTTACATAGCTTTGAGGTTTATAGCACCAGTCTGTCTCCTTTTCCTTGATCATTTACCTTTGGG ATTTATAAAGTTTGTAATCTTCCACTACAGAATATGGGACCTTTCTTTAGAAAGGGATGAGGAAGAGGAGGCTGAATTTA AAGCTAAAACCAAAGAACTAGTTAATGCTCCTGAAGATCTGCCTCCCCAACTACTGTTTATTCACCAGGTAGTCGAAATA CTTCACTCGAAAAATGCTAGCAACAGACTCTTCAACGCACCCCATGTATTTGCTTATTTTGAGAAACTGAACACATTTTT TCAAAAAAGTGAGGCAAATGTGTTAAAAAACAGACCAGTTATAGAGTGTGTTGCTAGCACTCGTTCACTCAATATTTTAT CGGCTCATGTGTGTTTATTAATTTGTTTATTTCTTTTCAAAAACAGGGACAGAAAGATCTTAAAGAACTGCATTGGCACA CACAGATTCCTGGAATGATTGTGTCTACCGCAGCAGATGGATTCAACATCCTTATGCCTTCAAATATTCAGAGCACCCTG CCATCAGATGGTGCTTGA
CDS sequence (LotjaGi4g1v0366500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTCGCGGCATAAAACATCGAATGAAGGCCAAGAGCAAGAACAAGGGATCGAAGAAAGGGGATGGGACTTCTTCATC TTCTCTGGAGCCGCAAATTCCAGTGAAGGTGTGGCAGCCGGGTGTGGACAAGATGGAGGATGATGAAGAGCTCCAGTGTG ATCCTTCTGCTTACAATTCTCTTCATGCTTTTCACATTGGATGGCCCTGTCTGAGCTTTGATGTTGTACGCGACACTTTG GGCTTAGTTCGAACAGAGTTTCCCCACACTGTGTATTTCATGGCAGGGACTCAGGCAGAGAAAGCTTCATGGAATTCAAT TGGAATTTTTAAAGTATCAAAAATATCTGGTAAGAGACGTGAATTAGTGCCCAAACTTGAAGCTGATGACTCTGGAGTGG ATGGTGAGGATAGTGATAGTGAGGATGATAGTGAAGATGAAGATGAAGATGGTGCTCAGGGTCCCACTTTGCAGTTGCGA AAGGTAACTCACGAAGGATGTGTCAACCGTATACGTTCCATGACACAAAATCCCCATATATGTGCAACTTGGGCAGATAC CGGTCATGTGCAGATCTGGGACATGAGCTCTCATCTCAATTCTCTAGCAGAGACAGAAACAGGTGCCCAAGGAGTTGCTG CTGTTTTTAATCAGGTCCCACTACATAAATTTAAGCACAAAGATGAAGGATATGCTATAGACTGGAGTCCTGTTGTTCCT GGAAGGCTTGTATCTGGGGATTGTAATAATTGTATCTATCTGTGGGAGCCCACATCTGCTGCAACATGGAATATTGACAA CGCTCCATTTATCGGACATACTGCTAGTGTTGAAGATCTGCAATGGAGCCCTACAGAAGATCATGTTTTTGCTTCTTGTT CTGTGGATGGAAGCATTGCAATATGGGATACCCGTCTGGGGAAGTCGCCAGCTGCGTTTTTTAAAGCACATAAAGCAGAT GTGAATGTATTGTCATGGAACAGGTTGGCTCCCTGTATGTTGGCCTCGGGGAGTGACGATGGGACTATTTCAATTCGTGA TCTCAGATTGCTCAAGGAAGGAGATTCGGTGGTAGCACATTTTGAATACCATAAGCGCTCAATCACATCCATTGAGTGGA GTCCACATGAAGCCTCTTCATTGGCTGTTTCATCAGAAGATAATCAGCTCACAATATGGGACCTTTCTTTAGAAAGGGAT GAGGAAGAGGAGGCTGAATTTAAAGCTAAAACCAAAGAACTAGTTAATGCTCCTGAAGATCTGCCTCCCCAACTACTGTT TATTCACCAGGGACAGAAAGATCTTAAAGAACTGCATTGGCACACACAGATTCCTGGAATGATTGTGTCTACCGCAGCAG ATGGATTCAACATCCTTATGCCTTCAAATATTCAGAGCACCCTGCCATCAGATGGTGCTTGA
Protein sequence (LotjaGi4g1v0366500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTRGIKHRMKAKSKNKGSKKGDGTSSSSLEPQIPVKVWQPGVDKMEDDEELQCDPSAYNSLHAFHIGWPCLSFDVVRDTL GLVRTEFPHTVYFMAGTQAEKASWNSIGIFKVSKISGKRRELVPKLEADDSGVDGEDSDSEDDSEDEDEDGAQGPTLQLR KVTHEGCVNRIRSMTQNPHICATWADTGHVQIWDMSSHLNSLAETETGAQGVAAVFNQVPLHKFKHKDEGYAIDWSPVVP GRLVSGDCNNCIYLWEPTSAATWNIDNAPFIGHTASVEDLQWSPTEDHVFASCSVDGSIAIWDTRLGKSPAAFFKAHKAD VNVLSWNRLAPCMLASGSDDGTISIRDLRLLKEGDSVVAHFEYHKRSITSIEWSPHEASSLAVSSEDNQLTIWDLSLERD EEEEAEFKAKTKELVNAPEDLPPQLLFIHQGQKDLKELHWHTQIPGMIVSTAADGFNILMPSNIQSTLPSDGA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 15 | 15 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 7 | 464 | 458 | 5.0E-215 | – | |
| Gene3D | 46 | 463 | 418 | 7.5E-101 | ||
| Pfam | 48 | 114 | 67 | 6.6E-14 | ||
| MobiDBLite | 124 | 155 | 32 | - | – | |
| MobiDBLite | 132 | 152 | 21 | - | – | |
| SMART | 155 | 194 | 40 | 2.3 | ||
| SUPERFAMILY | 161 | 455 | 295 | 1.06E-42 | ||
| SMART | 217 | 256 | 40 | 0.0022 | ||
| ProSiteProfiles | 223 | 403 | 181 | 26.103 | ||
| SMART | 258 | 303 | 46 | 1.3E-5 | ||
| ProSiteProfiles | 270 | 312 | 43 | 12.814 | ||
| Pfam | 270 | 303 | 34 | 3.3E-5 | ||
| SMART | 307 | 347 | 41 | 1.1E-4 | ||
| Pfam | 313 | 345 | 33 | 0.083 | ||
| SMART | 354 | 394 | 41 | 5.9E-5 | ||
| Pfam | 358 | 394 | 37 | 0.044 | ||
| ProSiteProfiles | 361 | 403 | 43 | 12.246 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0366500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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