Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0372400 |
| Transcript ID | LotjaGi4g1v0372400.3 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chalcone synthase; TAIR: AT5G13930.1 Chalcone and stilbene synthase family protein; Swiss-Prot: sp|P24826|CHS1_SOYBN Chalcone synthase 1; TrEMBL-Plants: tr|A0A151TLA2|A0A151TLA2_CAJCA Chalcone synthase 1; Found in the gene: LotjaGi4g1v0372400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75221590..75223080) extracted from Lotus japonicus Gifu genome v1.2.
TTATTAATAAAAAATAGCAACCGGCAACTAATAATTAATTAGTACTATCTACCCACTTTCAAGTAGTATATATATAAACC CTCTTCCTCACCAATTCATTCACAACATCCCCATTCATCATCATACTTTAAGTCTTTTCTTTCTAACTTGAGCTTTTAGC CAACTTCGTTCTCTGTTCTGCAAGCTTGTTTAGTAACCAGAAAAGATGGTGAGTGTTGAAGAGATTCGTAAGGCACAACG TGCTGAAGGCCCTGCCACTGTCATGGCAATTGGCACTGCAAATCCTTCCAACTGTGTGGATCAGAGTGAATACCCTGATT TCTATTTTCGTGTCACAAATAGCGAGCACAAGACTGAACTCAAACAAAAATTCAAGCGCATGTGTAAGTATATATATATC TCATATATATGTCTTAATCTGTTTAAGTGTGCGTAATTTCAAACATATCATTCAACTTTTCAAAATGCATTATCTTATAC TGTTTGATATCTATTTCAGGTGAAAAATCAATGATTAAGAAGAGATACATGTATCTAACTGAGGAGATTCTCAAAGAAAA TCCTAGTGTGTGTGAATATATGGCACCATCATTGGATGCAAGGCAAGACATGGTGGTTGTAGAGGTACCGAGGTTGGGAA AAGAAGCAGCAACAAAGGCAATCAAGGAATGGGGTCAATCCAAATCCAAGATTACTCACCTCATCTTTTGCACCACGAGC GGTGTGGACATGCCTGGTGCTGATTATCAGCTTACAAAACTCTTAGGACTTCGTCCATCAGTGAAGCGTTACATGATGTA CCAGCAAGGGTGCTTTGCTGGTGGCACGGTGCTTCGTCTAGCCAAAGACTTGGCTGAGAACAATAAAGGTGCTCGTGTGC TTGTGGTTTGTTCAGAGATCACAGCAGTCACGTTCCGTGGCCCCAATGACACCCATCTTGATAGCCTTGTGGGTCAAGCT TTATTTGGAGATGGTGCCGCTGCGGTCATTGTTGGTTCTGATCCACTATCAGGGGTTGAAAAACCTTTGTTTGAACTAGT CTGGACTGCGCAAACAATCCTCCCCGACAGTGAAGGGGCAATTGATGGCCACCTTCGTGAAGTAGGACTGACATTTCATC TTCTCAAGGATGTTCCTGGACTCATCTCAAAGAATATTGAGAAAGCCTTAGTTGAAGCCTTCCAACCTTTGGGCATATCT GATTACAATTCTATCTTCTGGATTGCACACCCTGGTGGACCTGCCATTCTAGATCAAGTTGAGGCTAAATTAGGCTTGAA GCCTGAAAAAATGGAAGCGACACGACATGTGCTAAGTGAGTATGGTAACATGTCAAGTGCATGCGTGTTATTCATCATGG ATGAAATGAGAAAGAAATCTAAAGAAAATGGACTTAGCACAACAGGTGAAGGACTTGAATGGGGTGTGCTATTCGGCTTT GGTCCTGGACTCACTGTTGAAACTGTGATGCTTCGTAGTGTGACTGTCTAG
CDS sequence (LotjaGi4g1v0372400.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGTGTTGAAGAGATTCGTAAGGCACAACGTGCTGAAGGCCCTGCCACTGTCATGGCAATTGGCACTGCAAATCC TTCCAACTGTGTGGATCAGAGTGAATACCCTGATTTCTATTTTCGTGTCACAAATAGCGAGCACAAGACTGAACTCAAAC AAAAATTCAAGCGCATGTGTGAAAAATCAATGATTAAGAAGAGATACATGTATCTAACTGAGGAGATTCTCAAAGAAAAT CCTAGTGTGTGTGAATATATGGCACCATCATTGGATGCAAGGCAAGACATGGTGGTTGTAGAGGTACCGAGGTTGGGAAA AGAAGCAGCAACAAAGGCAATCAAGGAATGGGGTCAATCCAAATCCAAGATTACTCACCTCATCTTTTGCACCACGAGCG GTGTGGACATGCCTGGTGCTGATTATCAGCTTACAAAACTCTTAGGACTTCGTCCATCAGTGAAGCGTTACATGATGTAC CAGCAAGGGTGCTTTGCTGGTGGCACGGTGCTTCGTCTAGCCAAAGACTTGGCTGAGAACAATAAAGGTGCTCGTGTGCT TGTGGTTTGTTCAGAGATCACAGCAGTCACGTTCCGTGGCCCCAATGACACCCATCTTGATAGCCTTGTGGGTCAAGCTT TATTTGGAGATGGTGCCGCTGCGGTCATTGTTGGTTCTGATCCACTATCAGGGGTTGAAAAACCTTTGTTTGAACTAGTC TGGACTGCGCAAACAATCCTCCCCGACAGTGAAGGGGCAATTGATGGCCACCTTCGTGAAGTAGGACTGACATTTCATCT TCTCAAGGATGTTCCTGGACTCATCTCAAAGAATATTGAGAAAGCCTTAGTTGAAGCCTTCCAACCTTTGGGCATATCTG ATTACAATTCTATCTTCTGGATTGCACACCCTGGTGGACCTGCCATTCTAGATCAAGTTGAGGCTAAATTAGGCTTGAAG CCTGAAAAAATGGAAGCGACACGACATGTGCTAAGTGAGTATGGTAACATGTCAAGTGCATGCGTGTTATTCATCATGGA TGAAATGAGAAAGAAATCTAAAGAAAATGGACTTAGCACAACAGGTGAAGGACTTGAATGGGGTGTGCTATTCGGCTTTG GTCCTGGACTCACTGTTGAAACTGTGATGCTTCGTAGTGTGACTGTCTAG
Protein sequence (LotjaGi4g1v0372400.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSVEEIRKAQRAEGPATVMAIGTANPSNCVDQSEYPDFYFRVTNSEHKTELKQKFKRMCEKSMIKKRYMYLTEEILKEN PSVCEYMAPSLDARQDMVVVEVPRLGKEAATKAIKEWGQSKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPSVKRYMMY QQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPNDTHLDSLVGQALFGDGAAAVIVGSDPLSGVEKPLFELV WTAQTILPDSEGAIDGHLREVGLTFHLLKDVPGLISKNIEKALVEAFQPLGISDYNSIFWIAHPGGPAILDQVEAKLGLK PEKMEATRHVLSEYGNMSSACVLFIMDEMRKKSKENGLSTTGEGLEWGVLFGFGPGLTVETVMLRSVTV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 1 | 231 | 231 | 8.27E-81 | ||
| Gene3D | 1 | 235 | 235 | 5.4E-94 | ||
| PANTHER | 2 | 388 | 387 | 3.5E-248 | – | |
| PANTHER | 2 | 388 | 387 | 3.5E-248 | ||
| PIRSF | 2 | 389 | 388 | 2.9E-137 | ||
| Pfam | 5 | 228 | 224 | 5.8E-122 | ||
| CDD | 16 | 384 | 369 | 2.41188E-174 | – | |
| ProSitePatterns | 156 | 172 | 17 | - | ||
| SUPERFAMILY | 235 | 386 | 152 | 1.52E-52 | ||
| Gene3D | 236 | 389 | 154 | 3.3E-57 | ||
| Pfam | 238 | 388 | 151 | 1.5E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Transferase activity, transferring acyl groups | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor). | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0372400.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…