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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0374400 |
| Transcript ID | LotjaGi4g1v0374400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box/kelch-repeat protein; TAIR: AT1G55270.1 Galactose oxidase/kelch repeat superfamily protein; Swiss-Prot: sp|Q93W93|FBK22_ARATH F-box/kelch-repeat protein At1g55270; TrEMBL-Plants: tr|I3SJ08|I3SJ08_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0374400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75363704..75365022) extracted from Lotus japonicus Gifu genome v1.2.
TTATGCACATGCATTTCTTAGTGATTTTTTTTGGTACTTCCAATGTACTAACATGGAAAGTTTCATAGGTGGACTCTGTT TCATGCTACTGTAAAGTAGATTCAGGCCTGAAAACAGTTGCTGGGGCAAGGAAATTTGTTCCAGGATCAAAGATATGTAT CCAACCTGACATAAACCCGAATGCACATAGGAACAAAAACTTGCGTAGAGAGAAGACAAAAGTTCAGCCTCCTCTGTTAC CTGGTCTTCCTGATGATCTTGCTATTGCTTGTTTGATTCGTGTACCCAGGGTTGAGCACAGGAAACTGCGTTTGGTTTGC AAGAGATGGTACCGCCTCCTGTCTGGAAATTTCTTCTATTCGCTCAGGAAAAGTCTTGGAATGGCAGAAGAATGGGTTTA TGTCATCAAAAGAGACCGTGAGGGAAGAATTTCATTGCATGCTTTTGATCCCATTTACCAACTATGGCAATCCCTTCCGC CTGTTCCTGGGGAATATTCTGAAGCATTGGGATTTGGCTGTGCCGTTCTTAGTGGTTGTCACTTGTACTTGTTTGGCGGA AGAGATCCACTGAAGGGGTCTATGAGACGAGTCATTTTCTACAATGCCCGTACAAATAAATGGCACAGAGCACCAGATAT GCTGCGGAAACGACATCTGTTTGGCTCTTGTGTTATAAATAACTGTCTCTATGTTGCTGGTGGGGAATGTAAAGGAATTC AAAGAACTCTTCGATCTGCTGAAATTTATGACCCCAACCGGAACAGGTGGAGCTTTATCTCAGAGATGAGCACTGCCATG GTTCCTTTTATTGGTGTTGTTCATAATGAAACATGGTTTTTGAAGGGACTTGGGACGAATCGCAATGTCATCTGTGAATC CTATGCACATGAAACTGATACCTGGACCCCTGTAAGCAATGGAATGGTCAATGGATGGCGTAATCCAAGTATCTCGCTGA ACGGACAGCTCTACGCCCTCGATTGCCAGGATGGTTGCAAGCTCAAAGTATATGATGGAGCAACAGATTCATGGAAAAGG TTTATTGATAGCAAGCTTCATTTAGGTAGTTCTCGGGCTCTCGATGCTGCTGCTCTTGTTCCCCTTAATGGAAAGCTATG CATTATCCGCAACAATATGAGCATCAGTCTAGTTGATGTCTCGAGTCCGAACAAACGCGTGGAAAGCAATCCTCACCTTT GGGAAAATATTGCTGGAAAAGGACCTGTCAGGTCTCTGGTTAGAAATTTATGGTCAACTATAGCAGGGAGAGGTGGTTTG AAGAGTCACATTGTTCACTGTCAGGTTCTTCAAGCCTGA
CDS sequence (LotjaGi4g1v0374400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGAATGGGTTTATGTCATCAAAAGAGACCGTGAGGGAAGAATTTCATTGCATGCTTTTGATCCCATTTACCA ACTATGGCAATCCCTTCCGCCTGTTCCTGGGGAATATTCTGAAGCATTGGGATTTGGCTGTGCCGTTCTTAGTGGTTGTC ACTTGTACTTGTTTGGCGGAAGAGATCCACTGAAGGGGTCTATGAGACGAGTCATTTTCTACAATGCCCGTACAAATAAA TGGCACAGAGCACCAGATATGCTGCGGAAACGACATCTGTTTGGCTCTTGTGTTATAAATAACTGTCTCTATGTTGCTGG TGGGGAATGTAAAGGAATTCAAAGAACTCTTCGATCTGCTGAAATTTATGACCCCAACCGGAACAGGTGGAGCTTTATCT CAGAGATGAGCACTGCCATGGTTCCTTTTATTGGTGTTGTTCATAATGAAACATGGTTTTTGAAGGGACTTGGGACGAAT CGCAATGTCATCTGTGAATCCTATGCACATGAAACTGATACCTGGACCCCTGTAAGCAATGGAATGGTCAATGGATGGCG TAATCCAAGTATCTCGCTGAACGGACAGCTCTACGCCCTCGATTGCCAGGATGGTTGCAAGCTCAAAGTATATGATGGAG CAACAGATTCATGGAAAAGGTTTATTGATAGCAAGCTTCATTTAGGTAGTTCTCGGGCTCTCGATGCTGCTGCTCTTGTT CCCCTTAATGGAAAGCTATGCATTATCCGCAACAATATGAGCATCAGTCTAGTTGATGTCTCGAGTCCGAACAAACGCGT GGAAAGCAATCCTCACCTTTGGGAAAATATTGCTGGAAAAGGACCTGTCAGGTCTCTGGTTAGAAATTTATGGTCAACTA TAGCAGGGAGAGGTGGTTTGAAGAGTCACATTGTTCACTGTCAGGTTCTTCAAGCCTGA
Protein sequence (LotjaGi4g1v0374400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEEWVYVIKRDREGRISLHAFDPIYQLWQSLPPVPGEYSEALGFGCAVLSGCHLYLFGGRDPLKGSMRRVIFYNARTNK WHRAPDMLRKRHLFGSCVINNCLYVAGGECKGIQRTLRSAEIYDPNRNRWSFISEMSTAMVPFIGVVHNETWFLKGLGTN RNVICESYAHETDTWTPVSNGMVNGWRNPSISLNGQLYALDCQDGCKLKVYDGATDSWKRFIDSKLHLGSSRALDAAALV PLNGKLCIIRNNMSISLVDVSSPNKRVESNPHLWENIAGKGPVRSLVRNLWSTIAGRGGLKSHIVHCQVLQA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 41 | 41 | - | – | |
| PANTHER | 1 | 312 | 312 | 1.5E-191 | – | |
| PANTHER | 1 | 312 | 312 | 1.5E-191 | – | |
| Gene3D | 5 | 272 | 268 | 1.2E-37 | ||
| SUPERFAMILY | 11 | 252 | 242 | 3.01E-44 | ||
| Phobius | 42 | 60 | 19 | - | – | |
| Pfam | 44 | 89 | 46 | 1.9E-6 | – | |
| SMART | 54 | 101 | 48 | 2.9E-8 | ||
| Phobius | 61 | 312 | 252 | - | – | |
| Pfam | 91 | 137 | 47 | 7.5E-12 | ||
| SMART | 102 | 150 | 49 | 6.6E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0374400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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