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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0375900 |
| Transcript ID | LotjaGi4g1v0375900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pheophorbide a oxygenase, chloroplastic; TAIR: AT4G25650.1 ACD1-like protein; Swiss-Prot: sp|Q8W496|PTC52_ARATH Protochlorophyllide-dependent translocon component 52, chloroplastic; TrEMBL-Plants: tr|G7LIM7|G7LIM7_MEDTR Chlorophyllide A oxygenase; Found in the gene: LotjaGi4g1v0375900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75474169..75478892) extracted from Lotus japonicus Gifu genome v1.2.
AGCTCATAATTTCAATTTCAATAAAATACAAATACACACTCATGTCCAAATAAATTGTAAAAAAAAAATTAAAAAAAAAA TTTCTAACAATCTCTTATCCTTTAGTTTGTTCTTGTGGCTCTTGATCACACACGCAGCCTTGTGATCACTCATCAAGTTA TTCAGTTTCACTTCATTACATGTTCAAGTGTTCTCCTTTATCTGTTGCCACTTTCCTGTCTTGTAGAAGACAACATGGAA GCTGCAGTAGCTTTCTCTGTTCGTTCACTTCACATTCCAACACCACTCGAATCATCAACCCCACTTAGGAAATCCATGTT CTTGAGCACACAACTGAATCCACCACTTTCATTAGTTCATGGGATCACTTCAAAATCCAAGCTTTTCACTGCATTATCAC CCACTCAGCTGACAGAAGAATCCAGTAGTAATAATCTTCCTGAGGATGAGCCAGAAGTTGAAGCCAATTCAGAGAAATTT GACTGGTACTCACAGTGGTACCCTCTGATGCCAATTTGTGACCTGGACAAGAGGGCACCTCATGCCAAGAAGGTGCTGGG AATTGATGTGGTTGTGTGGTGGGATAGGAATGAGGGTGCATGGCAGGTGTTTGATGATGCTTGTCCTCATAGATTGGCAC CTTTGTCTGAAGGAAGGATTGATCAATGGGGTAGGTTGCAGTGTGTGTACCATGGTTGGTGCTTTAATGGCTCAGGAGAT TGCAAGTTTATTCCTCAGGCACCCCCTGAAGGCCCTCCGGTAATTACTCTTGAATCTTTGATCATAATTACTAGTTAGTA TGTTGTTGTAATGTGGTTTATTTTATTGAACAATTCTATGCTTCATTTCCTGTGTAGCTAGTAGCCGGAACACATTTGAA AATTCTGTTTTAACTAAACTTTCAGTAGTCCCTGCCATCATAAGATTGTAACTTGCTTGCATGTTTGGATACACGGTAGA AAAGGTCAAGCCAAAGTCAAGGTGGACATAAGCAATTTCCCTTAGAACTGTCCACCATGATTTTGGCCTCACTGTGGTTT TCCACCGTGTATACAGACATGCATGCAAGTTACAATCTTTTGATTGTCATAATTGATAACGCCCCAGGTAAAATTTTAAG GTGGGATCATATTGGCCTCAACTCTTACATATCCTTCTAGTTGAAAAATAACATCTCAGAAAAATTGGGGGAAAAAACTC TTAGCTAGTGAATGTATGTTGGTCAAATACGGGTCTTATCGCATTTATCTAATGATGAGCAGGTTGTGTGACTCTTTTTG AAACTCAGGAGGTAAATCATACATGATCCAGATCCAGAGCTTGTGTTTTTGTACCTCGTTTTTCTCAAAATCTTTAAATG CCACCAACTCAGTTTCTTCTACTTGTAATTCCTTGTGCAATCAACTAAAACTATGGAATCTAGATTGGTTGCAGTAGATT GATTCTTCCATTGCTTGTTATCTTGTCTTCCTCTCAGCCTAATAGTAATATGCTTTCTGAGTTAACTTCATGTTAATGTG TGTGGAACATCCGAAGCTCATTCGCTTTTGCCTTAAAAAAATGTGCAGGTTCATACGTTCAAAAAAGCATGTGTCGCTGC TTACCCAAGTACTGTGCAGAATGATATCTTGTGGTTTTGGCCAAATACTGACCCTCAATACAAAGATATCATTGAAAGAA AAAGACCCCCCTACATACCAGAGCTAGATGATCCATCGTATAATAGATTAATGGGAAACAGAGATATTACTTATGGGTAT GATTTTAAGACTAGAACCTATGATATTTCCTGTTTTGTATAACTCTAGACATCTGTACATGAGCTCACTTTCTTTGACCT AAGAAAAAAAAATGGAAGCTCCTCTAATGTAATTGTTTTTGGTTGATAATTATATAATTATGTTAGCTGATTCTGGAAGA TTCAAACACAAAAATTACATTATGCATATCAAGAGAGTTTTCTCCTATTTGTCTTTGACATGTTGTGATGAAATATCTGC AAGAAAAAATATATAATTTTCATTCTAGGGCATGAAAACCATATTCTCAACTTAGTATATTTTTCTAATTAAATGAATAT GCAATTTCAGGTATGAGGTTCTGATTGAAAACCTTATGGACCCTTCACATGTTCCATACGCACACTATGGACTAATGCGT ACACAACAACCGAAAGGCAGGCATATAAGATAAATCTTTTTAACACCACTACATTTCTGTTTACTTGATATATGGCACTT ACATGTGTAGGTGTTGTTTAACTTAACAGTGAAAGCTGATAGAGAAGGGGGCAGGCCACTTGAATTGTCAATTGAAAAGC TAGATATCAATGGTTTCAGCGCAGATCAGGGTTGGAGCAAAAGCAAATTTATGCCACCATGCATTTTCTATGCATATACT CCAGATCAACCTGCATCATCTGCTGAAACTAAGGTAACTTGTTTAGTAGATATGGTTTTTAGATTACAATTAATAGCCGG CCAGTTTTATAAGGTTGTTGCGTAATATCATATTATGTGTTAAACTTAATGCAGAAACCATCATTTCAGAAGAAATTTGG TTTGATCTTCATTTGTGTTCCAGTTAGTCCTGGTAATAGCAGATTAATATGGTGCTTCCCGAGAAACTTTGGACTGTGGA TTGACAAGATTGTGCCTCGATGGATGTTCCATGTGGGACAAAACCTGATTCTAGATTCAGATTTATATCTTCTCCATCTT GAGGTAATTCCTATAATGATTCATAAATTATATGTTCTGTTGACTTGGTAGTTCTATCAGTCTGCTTTTTCCTCTACGCG TTATTATAAATTATACTGATCAAATAAACTAAACTATCACACTGACAGATTTAGAATATTCTTTTAAACCGCTACTTCAG CCAACATATATAGCCCAGGTTATTCTGCTTTTTTTTTAGTTCATAAGGCCAACGGCGGCAAAATTTCTGATCAAAATATT AGGTGATGATATTTTCACTAAAATGCTTGGTATTTGTAAGCATAGTGGTTGCATTCAAGTGGTATTTTAGGTTAGATGTA AATAGTGCATTCATATTCTCTACCTAAATTATTTTTCTGCTGGTCGAATTGTTGAGGAAGATTTTATCTTAGATTGTAGC TAATAAATAAGTCAATATTACAATCTATACTTCAGCTTTTATGATTGAATGTCTTTTAGAATAGTGAAAAAATTTCTCAA CAATGATGCAAATATCAAAGTCTTACTAATTTATGTTTTAACAACCAAGTTCTAGTGTGTCTCTGCATGTTTCCATTGGT ATTATGTTCTACACCTGACCAAAATTGGCTACCTTTGTTTCTTTCTCTTTCTACTTCCCCTTCTTTTCTGGCTTGTTTTA TTTCACCATGTTGAGGTGTCAACAGAGCAAAAGTATTATATCCCTGGAAAACAATTTCATGGTTTGATTCCTCATATTTG TTTATTAATTATTTTTATAGGAACAAAAAATAATGGATGTTGGTCAAGCTAATTGGCAAAAGTCCTGTTTTGTGCCAACA AAAGCAGATGCCCTTGTGGTTGGTTTTAGGAAGTGGTTAAAGAAGTATGCAGGTAGTCAAGTTGAATGGAGAGGAAAATA TAGTGGGGGTGTTCTTCCTCCAACACCACCTAGAGAACAGCTTTTGGACAGGTAACTCTTGTAAGATTGCACTTGAACAT CGAAACGTAGGAGTTCATGGTTTCAATTTAGTTATTTGTATTTCAAGAAGAGTGACAATATCATTCAATATGTGAAGTTT TAAAGTAAAAACTATGAATATTTACTGACAATTCAAATGCATATATGCTAATAAAAAAAGTGGAAAGCTTTTCTTTTGGG GTGAGGGAGTTGCTTCCTTAGCCCCTTGAAAGCTCAGTTCCTGGTCCTGACATTCTTCATAACATTAATTTTCCACAGGT ACTGGAGCCATACTGTGAATTGCAGGAGTTGCAATTCTGCTTATAAGAGCCTCAAAGTGGTTGAAGTCATGTTGCAGATC ATATCTGTTGCTTCAATTGGGATTGTTGCCACAATGAAGCAGGGTGGAATGTCAGTGGTAACAAGGAATTCAATGGTTGT ATTTGCAGTACTATCATTTGCCTTGTCTCGGTGGTTAGCTCACTTCATATACAAAAACTTCCATTATCATGACTACAATC ATGCCTTTCGCTGAGGTGTGTTCCCAACGTTCTTCATGTCCAACTATGTATACAGTGAAGCTCTCCAAGAACAAAGCCAC CAAATATAGGTACTTCGGAGGAGTTCTTGAACTTATGTACATGCATATGTGTATTAATTAAGTTCAAAATCTTCAAATTC ATATGTATTATTGGCTAGTTAAAATGCTAAACAACATCACCTATAGAAGGAATAATCATGTTTTCAATGTACCAGAGATT TCATCAAGTGATGCAGAAACTTGCATCATGAGTCAGGGAACTCAGATCTAAAGGGGATCAATATGAAACAAGGATTTTAT CACAAAGAACCCATTAATATGAATGTGATTACTGATACTTTGAGCAAGAAGTTCATAGGTAGAAACCAATGGTGAATAAG TTCCAAGTTCATAGGTGACTTCTCCCGTGAGGTCACTTCCCAAGTGATAGTCTTATACCTATATTGCAATGAATTGTTAC TATTAAATCTTAAAATTCATTCTTAATTGTATAGTCTCATACTTATATAGCCTAAGATAATTATTTTGAATTGCGATATC ATAT
CDS sequence (LotjaGi4g1v0375900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGCTGCAGTAGCTTTCTCTGTTCGTTCACTTCACATTCCAACACCACTCGAATCATCAACCCCACTTAGGAAATC CATGTTCTTGAGCACACAACTGAATCCACCACTTTCATTAGTTCATGGGATCACTTCAAAATCCAAGCTTTTCACTGCAT TATCACCCACTCAGCTGACAGAAGAATCCAGTAGTAATAATCTTCCTGAGGATGAGCCAGAAGTTGAAGCCAATTCAGAG AAATTTGACTGGTACTCACAGTGGTACCCTCTGATGCCAATTTGTGACCTGGACAAGAGGGCACCTCATGCCAAGAAGGT GCTGGGAATTGATGTGGTTGTGTGGTGGGATAGGAATGAGGGTGCATGGCAGGTGTTTGATGATGCTTGTCCTCATAGAT TGGCACCTTTGTCTGAAGGAAGGATTGATCAATGGGGTAGGTTGCAGTGTGTGTACCATGGTTGGTGCTTTAATGGCTCA GGAGATTGCAAGTTTATTCCTCAGGCACCCCCTGAAGGCCCTCCGGTTCATACGTTCAAAAAAGCATGTGTCGCTGCTTA CCCAAGTACTGTGCAGAATGATATCTTGTGGTTTTGGCCAAATACTGACCCTCAATACAAAGATATCATTGAAAGAAAAA GACCCCCCTACATACCAGAGCTAGATGATCCATCGTATAATAGATTAATGGGAAACAGAGATATTACTTATGGGTATGAG GTTCTGATTGAAAACCTTATGGACCCTTCACATGTTCCATACGCACACTATGGACTAATGCGTACACAACAACCGAAAGT GAAAGCTGATAGAGAAGGGGGCAGGCCACTTGAATTGTCAATTGAAAAGCTAGATATCAATGGTTTCAGCGCAGATCAGG GTTGGAGCAAAAGCAAATTTATGCCACCATGCATTTTCTATGCATATACTCCAGATCAACCTGCATCATCTGCTGAAACT AAGAAACCATCATTTCAGAAGAAATTTGGTTTGATCTTCATTTGTGTTCCAGTTAGTCCTGGTAATAGCAGATTAATATG GTGCTTCCCGAGAAACTTTGGACTGTGGATTGACAAGATTGTGCCTCGATGGATGTTCCATGTGGGACAAAACCTGATTC TAGATTCAGATTTATATCTTCTCCATCTTGAGGAACAAAAAATAATGGATGTTGGTCAAGCTAATTGGCAAAAGTCCTGT TTTGTGCCAACAAAAGCAGATGCCCTTGTGGTTGGTTTTAGGAAGTGGTTAAAGAAGTATGCAGGTAGTCAAGTTGAATG GAGAGGAAAATATAGTGGGGGTGTTCTTCCTCCAACACCACCTAGAGAACAGCTTTTGGACAGGTACTGGAGCCATACTG TGAATTGCAGGAGTTGCAATTCTGCTTATAAGAGCCTCAAAGTGGTTGAAGTCATGTTGCAGATCATATCTGTTGCTTCA ATTGGGATTGTTGCCACAATGAAGCAGGGTGGAATGTCAGTGGTAACAAGGAATTCAATGGTTGTATTTGCAGTACTATC ATTTGCCTTGTCTCGGTGGTTAGCTCACTTCATATACAAAAACTTCCATTATCATGACTACAATCATGCCTTTCGCTGA
Protein sequence (LotjaGi4g1v0375900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEAAVAFSVRSLHIPTPLESSTPLRKSMFLSTQLNPPLSLVHGITSKSKLFTALSPTQLTEESSSNNLPEDEPEVEANSE KFDWYSQWYPLMPICDLDKRAPHAKKVLGIDVVVWWDRNEGAWQVFDDACPHRLAPLSEGRIDQWGRLQCVYHGWCFNGS GDCKFIPQAPPEGPPVHTFKKACVAAYPSTVQNDILWFWPNTDPQYKDIIERKRPPYIPELDDPSYNRLMGNRDITYGYE VLIENLMDPSHVPYAHYGLMRTQQPKVKADREGGRPLELSIEKLDINGFSADQGWSKSKFMPPCIFYAYTPDQPASSAET KKPSFQKKFGLIFICVPVSPGNSRLIWCFPRNFGLWIDKIVPRWMFHVGQNLILDSDLYLLHLEEQKIMDVGQANWQKSC FVPTKADALVVGFRKWLKKYAGSQVEWRGKYSGGVLPPTPPREQLLDRYWSHTVNCRSCNSAYKSLKVVEVMLQIISVAS IGIVATMKQGGMSVVTRNSMVVFAVLSFALSRWLAHFIYKNFHYHDYNHAFR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 531 | 531 | 5.4E-244 | – | |
| Phobius | 1 | 467 | 467 | - | – | |
| PANTHER | 1 | 531 | 531 | 5.4E-244 | – | |
| CDD | 71 | 209 | 139 | 2.71765E-83 | – | |
| SUPERFAMILY | 76 | 204 | 129 | 1.1E-31 | ||
| Gene3D | 83 | 217 | 135 | 1.2E-36 | ||
| Pfam | 87 | 171 | 85 | 2.2E-18 | ||
| ProSiteProfiles | 88 | 198 | 111 | 26.822 | ||
| SUPERFAMILY | 194 | 426 | 233 | 4.4E-29 | – | |
| Gene3D | 223 | 427 | 205 | 4.3E-5 | – | |
| Pfam | 300 | 393 | 94 | 1.0E-28 | ||
| Phobius | 468 | 487 | 20 | - | – | |
| Phobius | 488 | 498 | 11 | - | – | |
| Phobius | 499 | 519 | 21 | - | – | |
| Phobius | 520 | 532 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chlorophyllide a oxygenase [overall] activity | Catalysis of the reactions: chlorophyllide a + O2 + NADPH + H+ = 7-hydroxychlorophyllide a + H2O + NADP+; and 7-hydroxychlorophyllide a + O2 + NADPH + H+ = chlorophyllide b + 2 H2O + NADP+. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. | ||
| Molecular function | 2 iron, 2 sulfur cluster binding | Interacting selectively and non-covalently with a 2 iron, 2 sulfur (2Fe-2S) cluster; this cluster consists of two iron atoms, with two inorganic sulfur atoms found between the irons and acting as bridging ligands. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0375900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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