Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0378400 |
| Transcript ID | LotjaGi4g1v0378400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A0B2PFQ4|A0A0B2PFQ4_GLYSO Putative Myb family transcription factor; Found in the gene: LotjaGi4g1v0378400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75769463..75775890) extracted from Lotus japonicus Gifu genome v1.2.
GTCTCTAGCTAGCAGAGGTCAAACAGTTAAGATAATCACGAGCAAGGTAGTAAGAGACAGATACAGACTTTTACAACTGT CAAGGGAGGGAGAAGGAGGGGAGAAAAAAAGGGTCACATGATTTGCAACAGTACAAAAAGGGAGGGACCAGCAACATCTG TTTCCATTATGCAAGTTTATTACAATTTAAAGACAACAAGTAAGTAGCCCTGTCCGAATATTGTTCATTCTCCATTTTCT TAATTTGTTTTCTTCTTCTCCATAAAGCTCCAATTCTAATACCTTCAACTTATGACTCTAATTCTGCTGCTGCTGAGTGA TGTACCAAAAAGGCAGACAATCCAAAACAACAACCAGGTATCAACTTCCATCATCATCATCATCATCATCATCATCATCA TCTCTCTCTCCTCTCTCTTTTCCCCCTTCCACCAGGATCAAAGAAAAAGCATGTGATGATCAGAGATGACTGAGATATGT TTGGATATGCAGAGAGATGATCAATTAGTAGGCACATATCATCATCTTAAGTGGTGGTTAGTATATATGTAGTTTAGTTT TAAAAGGAGAAGAAGACACACAAACAAAGTGTTTTGATTTCCTTGCTTTTTGTCCTGATGAGAAAGTCATTAATTGTATC AGTTTGTTTATTAGATATATCATTCCCTATCTTCATGAGTTCCTTCTCAATTCTTCTTTATAACTACAACATGATTCCTT CTCAATCTCGTTATCTTATGTAAGAGCTTGAATGAATTCCTAGACAACTTGTTACGGATTTCTTTTTCAATTCCTAACTT TTTCTCCAGAGAAAATTTTCAACTACTAATATTTCCTTCTTAAGTGCATGTCCCTAACCAAGATGTGTTCTGTGCATAAT GATTGGCAATGTATTGAATATATATATCGTCCATAAAGTGTGCCTATGTTAACCTTAATTACTCTTCTTTTTGAGACTCT TCCGAGTTCATAAAATAGTCGTCACTGTGTTTTGCAAATCACCTGGGTCCAATTTTTCTGTTTCGTGTTTAGATTGACTT CTCTTTCATCATAATCAATTCTGAAACGACTCACAGATGCTTCTCTTCAGAATTGATTTTAACTTCGGAAACAATTGTAT AAGATTTTCCAAACATGTACTAATTTATATGAACCCTTTGGAATTTTTATTGTTTGAATGGTATGAAAACCTTATATTTC TTGTTAAGTTTCCAGATTAAGAAATGAAAATGACCTGAAGTAATGCACATGTTCATATAATTTGCATCATTTTATATAAT AATAAATAAGTCCCTCCAACCTTTAGTTAATTCCTTTCCTCTTATTCAGTAACGTAACTTCCGTTAGGTAAGTCTCAAAA AGTACTTCAGAGGGACAAATTCTTTAAGTATGTAGATCTGAACCTGACACCCCTCAGAAATTTTATTCACATGTTCATGG TAGAGAAGTTGGTTGCATTCTTTTTACTGAAATTCTTTACTTTAACCTACTACTTCTATACCATATGAATTTAATAAATA TCCTCTACCATAACTTCTGACAGTCATTTTTTTTCTTCAGCAGTTAGTACTTAAACATCCCAACAATTACACCCCATTTT TCTAATTCCCTCTCTTCTTAGTATCATATATACATTCTTTACTTCATTATTTTCTCTTCTTTTCTTACTTTAAGTGTCTA CACTTTGCGGATATTCACGAATAATTTTCCTTATTTCTTTGAGACATGCATTTAGCCATTTACTATTACTTTACCATGGC CTTGTACATTTCACTCCATCTAGCTAATTAAAATATCATAAAGCGTAGTAATTGTTGTAGAGAAATCCCAGCCTGTTCTC ATCTTTAAGTCACTTTGTTGCTAATTCTACCTTCAATGCTTTTAAATATTTTCTGTTTGTTTCAGACTTGAAATGCTAAC ATAATTGGAGCCTTTGGAGGGTGATTTTGATTGCTGAGCAACAACAACAAAAGAATATGTCAGACAGGTATGAGATTCAT GATGAAAACGAGAGGAGTGAGGACCAAGGTGATGACAATTCAATTGGATCTTCTCAGAAATTGTCATCTTTTGACTTGAA TGAAGACGCATGTAGTGAAGATAACACTGATATTAATGATGATGAGGCCTGTGATGATGAGATCACAGGTGAGGAATATG AGAAAGGAAAGGATGAAGGCACTTCAACCAATAGAAGTAGCACATCAAGAGAAGGAAATGGAAGAAGAGGTGGTGTGAGA CAATATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGATCTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCT TGGTGGTCAAGAGAGTAAGTAATTATGTGTACCTTCTTATGACATTTTAATATCAACTTATTTTTCATCAGAACCAATTT TAGCACTCTAAAAAACTACTTACAAAAGTTTCTTACCATAATTAATTATGATTTTAGAATCAATTAAGATTTTCAAACAT GCTACAAATTAAATATATATGGTATATATGTTTGTATTCACAGTTAAACTAATACAAAATAGCTTCCGTTCCATAAAAAA TACTTGTAGTAGCTTCTTCTCATAACACTTTTTCATTTAAAATGGAAAGATATTGATTTTTTTTCAAAGCAAAAACCAGA TTTTATTTAGGGTTAAAAACTTTAATTGTCCTTAAACTCTGACCAAGGTTTGAAAACCGTCCCTCGCCGGAAAATTATCT GAAAACCGTCCCTAAACTATTGAAAACAAATTTGACCCATCCCTCCGGCCGCCATAGCTCCGGCAAGAGCCTTTTTTTTA TTTTACCCATCCCTGAACTTTGAGTGAAATTTGAAAACCGTCCTTTTTTTATTTTTATTTTTTAAAATTAAAACTCCCTA ATTTCTAAGAATTAAATCTACCTAATTTGAAAATTCCCTAATTTCTAAGAATTAAAATTCCCTAATTTAAAATCTAAACT TTGAGCAAAATCTGAAAATTCCCTAGTTTCTAAGAATTAAAATTCCAAATTTTTTCTAACAACAACAAGAAGAAGAAGAT GTTGTTGTTGGTGGAGGAAATGAGATGAAGATGAAGATGAAGAAAGAAGAAGAAAAGAGATATCTGAAGGAGAGAGAACT TGGGAATTGTGGTTAAATTGGGAATTCAGGCTTAGATTAAAGGGTATTAGATTTAATTCTTAGAAATTAGGGAATTTTAA TTTTTTTTAAAAAAAAGGGATGGTTTTCAGATTTCTCTCAAAGTTCAGGGATGGGTAAAAATAAAAAAAGGGCTTTTGTC GGAGCTAAGGCGGCCGGAGGGATGGGTCAAATTTTTTTTCAATAGTTCAGGGACGGTTTTCAGATAATTTTCCGGCGAGG GATGGTTTTCAGATTTCGCTCAAAGTTCAAGGACGGTTATATATTTTAACCCTTTTATTTATATGAAATAAACTTGAGAA CAACCTCTCATGACTTGAATCAAACATTAGACAGCATTATCTCCCGAATGCTATTGGATTTCAAAACTCATCCAGGTGTA GATGAAAGAACAACCTATGCCCTAATTTAAAATTTGTTTTGGTTGAACTTTTATGCATTTTGTTTACCTATACCAAGAAA AAATCTGGTTCACAAATTAAAAGGAAATGTGTCAAATAACATTAACAAAAATTAAGCATATTGTAAATAACATATATTGA ATGTTAGTTGTAAAAATATGGTTCACAGATTAACTATTTTTAACATGATTCATAATAGAATTCTCCGAACTTTTAATTTA ATTGGTGCAGGAGCAACACCAAAGTTGGTGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCA CTTGCAGGTAAAATTGGGGGATGATATAATGCTCTTTGAATTATATTTTTCCTTGAATATATTGTTGATGAGTATATTAC CAAATAAGTAATTTTCATATATAGTTATACAATTTTCATTTCAGATGTATCGTAGCAAGAAACTTGATGAGGCTGGGCAA GGTGAGGGCTACATATCCTAAATCTTTTTCAGCGTGCTAATGCAAATGAATCTTTCTGTGTACAATATAAGATAGTGCGC GCAGTTTCAGTCTTTAATTTGTGTCCTATTAATTTATCCATATGAACTAAAAATTACACACTACTTTGAGTGAGTGCTGT CAATTCTATATTGCAAGCTCGGACTTAGGGTTAGGGTTACCTTGAGTGTTTACCCAAAACTCTTGATTTTTGACAATTGA TTGGTAACTACTTTGCAGTACTCAGTCAGCCATACAGATCAACCCAAGGATTTGGTCGTATTTCTCAAGCCCATCAACCC ATGATTCCTCATCAACATTTCAAGATGGGAAACGGTGGAATCATTCTTGCAAGTAATTACAATGAGCATAGCTATTTCCA AGGCCTACGGCCGCAACCCTCCTCCTTATCACATTCAGATTCACATTCAAAGGCCATCGATTCAAGGTAAGTTATACCTA TGCATTTCATCACATACCGTAGCTAGAATTGCCCATTTGGATGGTTTGGTTAACAGTGCACCATCAAGAATAAAAATGTG GTTCACTTTGAATAATTTCATAATCACTTTTATCTGTACAAAAGCTATTTCCAATGCTTCTGTGAGTAGTTTATGATGTT AGAATATAATATAAAACCATTAAAGTGACCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTATTTGACATGGTA TCAGAGCATCTATGGCCGAGAGGTCTAGAGTTCGATCCTTGCTCCCCTCACTTTCTAATTAAAAAGTGGAATTTAATTAC CCTCATGGTAGGTGGGGGGCCTGTGCATTTATCCACGCTTCAAGCCCTGCGTGAGAGGGCGTGTTAGAATATAATATAAA ACCATTAAAGTGACCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTATTTGACATATGAATGTCAGAATTGATT ATGATGAAAAGAGAAACTAATCCAAATATATTATAAGTCTAACATAGTTTGGAAACACACATTAAAATCCTCATGTTTTC CATGCTTTTTGTTGTTAGGCAAATAATTTTCTATTTTTCATGGTTTTACAAGAAATTTTCAAGAAAATCAGTCTTTAGTA ATATCCAGATTTGCAATATCTCTCCCCACAGGCACCAACAATGGTACTCTAATCATCAACCTTTCAGAAGGCCTAGTTTT GAATTTGTCTCCTCAACCTCAACGGCCCTACAAACACAAGGACGATCAATAGCTTCAAACCAAATTCAACTAATGGATAC TACAAGACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAAGTGGCCTCCATTAGAAACTATGAACAATCATC ATCATTGGAAGAAAAACTATTCATCACAATCTGTTTTACATCAATTTGGCACCACTCCAGCAGCTCTAAAACCAGCTGAG TTGAGCATTGGAACCAACACAAGAATCAAGGAATTTCTATCAAACCCTGATGAGCACCACAACCCTTCCAACAGTTTAAA GCTAGAATTTAATCCCCCATTCCGGATTAAGGTAACATATATAAGATCTTTATTCTGGTCTGTATATTTTTTTTCTTTTT TTTCTTAATCATTGATAGATCTCTCTTGCTATTATATGCAGTTGAATCAAGAAAAGTTACAGATAGACAAGCAATGTGTG CCTGATTTGCAACTGAGTTTAAGTCAGAAAAATAGCAACAACGATGGTGGCGAGACCGATCATTCCAGAGAAACGCAAGA AATCAACACAAAACTTTCACTTTCTTAGAATTTAGATAGCCATGTCAATAATGCAAATACCACAAACTAGTCAATCATAA AGTCTGAGAGATGATATATTTTGATTTAAACCATAGGTATCACGAGGCAATCTTGTTCGAGCCGTTATATAAGATTTCTA TGGGCAACAAAGTTCTCTTCCAAGTATTTAACGCAGATACATTCACAAGGACTCAAACTCAAGATATTTGCTTAAGTTGT GCTCGTTGATCTATGCGTGCTTGGTGGTTGAGAGATGATATATTGACTCTGAAACAAAGTTACACAGTGACACATGCCTC CACATACCAATTATGGACTTCCCAATACATAGGTTTTTTCTTTCCCCTCCCCACAAAAAAAAAACCTGCAGACAAAAAAA TAGATTTGAAGTGAGTGTGTTCATGATTACTAGTTAGTTTCCAAGAGAGATTTTACTTGTGCAAGTATTTGGTCTTACCA GTCACAAATGTTGGGTTTTAAGATAGTTGGCAATTTGGGAAAATAGTTTGATAGAAAACTGAAGTGAGAACCGTGTAGTT TATTGATTTGATTCTTGGTATATAAGTAGAAGCTAGCAAACTTGTAGTTTGCTGCTCACTTGATTTCTTTGCCTAATTGT CTATTTATATGCTTGAATCGCCTCCTAT
CDS sequence (LotjaGi4g1v0378400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGACAGGTATGAGATTCATGATGAAAACGAGAGGAGTGAGGACCAAGGTGATGACAATTCAATTGGATCTTCTCA GAAATTGTCATCTTTTGACTTGAATGAAGACGCATGTAGTGAAGATAACACTGATATTAATGATGATGAGGCCTGTGATG ATGAGATCACAGGTGAGGAATATGAGAAAGGAAAGGATGAAGGCACTTCAACCAATAGAAGTAGCACATCAAGAGAAGGA AATGGAAGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGATCTTCATCTTTC CTTTGTGCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCAACACCAAAGTTGGTGCTTCAGCTAATGAATGTGAGAG GACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGTAGCAAGAAACTTGATGAGGCTGGGCAAGTACTCAGT CAGCCATACAGATCAACCCAAGGATTTGGTCGTATTTCTCAAGCCCATCAACCCATGATTCCTCATCAACATTTCAAGAT GGGAAACGGTGGAATCATTCTTGCAAGTAATTACAATGAGCATAGCTATTTCCAAGGCCTACGGCCGCAACCCTCCTCCT TATCACATTCAGATTCACATTCAAAGGCCATCGATTCAAGGCACCAACAATGGTACTCTAATCATCAACCTTTCAGAAGG CCTAGTTTTGAATTTGTCTCCTCAACCTCAACGGCCCTACAAACACAAGGACGATCAATAGCTTCAAACCAAATTCAACT AATGGATACTACAAGACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAAGTGGCCTCCATTAGAAACTATGA ACAATCATCATCATTGGAAGAAAAACTATTCATCACAATCTGTTTTACATCAATTTGGCACCACTCCAGCAGCTCTAAAA CCAGCTGAGTTGAGCATTGGAACCAACACAAGAATCAAGGAATTTCTATCAAACCCTGATGAGCACCACAACCCTTCCAA CAGTTTAAAGCTAGAATTTAATCCCCCATTCCGGATTAAGTTGAATCAAGAAAAGTTACAGATAGACAAGCAATGTGTGC CTGATTTGCAACTGAGTTTAAGTCAGAAAAATAGCAACAACGATGGTGGCGAGACCGATCATTCCAGAGAAACGCAAGAA ATCAACACAAAACTTTCACTTTCTTAG
Protein sequence (LotjaGi4g1v0378400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDRYEIHDENERSEDQGDDNSIGSSQKLSSFDLNEDACSEDNTDINDDEACDDEITGEEYEKGKDEGTSTNRSSTSREG NGRRGGVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLS QPYRSTQGFGRISQAHQPMIPHQHFKMGNGGIILASNYNEHSYFQGLRPQPSSLSHSDSHSKAIDSRHQQWYSNHQPFRR PSFEFVSSTSTALQTQGRSIASNQIQLMDTTRLAPMRPSQFLEEKKWPPLETMNNHHHWKKNYSSQSVLHQFGTTPAALK PAELSIGTNTRIKEFLSNPDEHHNPSNSLKLEFNPPFRIKLNQEKLQIDKQCVPDLQLSLSQKNSNNDGGETDHSRETQE INTKLSLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 88 | 88 | - | – | |
| MobiDBLite | 20 | 37 | 18 | - | – | |
| PANTHER | 24 | 407 | 384 | 8.5E-82 | – | |
| PANTHER | 24 | 407 | 384 | 8.5E-82 | – | |
| MobiDBLite | 38 | 57 | 20 | - | – | |
| Gene3D | 92 | 152 | 61 | 1.0E-24 | – | |
| ProSiteProfiles | 92 | 152 | 61 | 11.628 | ||
| SUPERFAMILY | 94 | 150 | 57 | 2.69E-14 | ||
| TIGRFAM | 96 | 151 | 56 | 1.7E-22 | ||
| Pfam | 98 | 148 | 51 | 8.2E-7 | ||
| MobiDBLite | 208 | 227 | 20 | - | – | |
| MobiDBLite | 380 | 408 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0378400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…