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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0378400 |
| Transcript ID | LotjaGi4g1v0378400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | MYB-like transcription factor family protein; TAIR: AT2G38300.1 myb-like HTH transcriptional regulator family protein; Swiss-Prot: sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600; TrEMBL-Plants: tr|A0A0B2PFQ4|A0A0B2PFQ4_GLYSO Putative Myb family transcription factor; Found in the gene: LotjaGi4g1v0378400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75769491..75775900) extracted from Lotus japonicus Gifu genome v1.2.
AAGATAATCACGAGCAAGGTAGTAAGAGACAGATACAGACTTTTACAACTGTCAAGGGAGGGAGAAGGAGGGGAGAAAAA AAGGGTCACATGATTTGCAACAGTACAAAAAGGGAGGGACCAGCAACATCTGTTTCCATTATGCAAGTTTATTACAATTT AAAGACAACAAGTAAGTAGCCCTGTCCGAATATTGTTCATTCTCCATTTTCTTAATTTGTTTTCTTCTTCTCCATAAAGC TCCAATTCTAATACCTTCAACTTATGACTCTAATTCTGCTGCTGCTGAGTGATGTACCAAAAAGGCAGACAATCCAAAAC AACAACCAGGTATCAACTTCCATCATCATCATCATCATCATCATCATCATCATCTCTCTCTCCTCTCTCTTTTCCCCCTT CCACCAGGATCAAAGAAAAAGCATGTGATGATCAGAGATGACTGAGATATGTTTGGATATGCAGAGAGATGATCAATTAG TAGGCACATATCATCATCTTAAGTGGTGGTTAGTATATATGTAGTTTAGTTTTAAAAGGAGAAGAAGACACACAAACAAA GTGTTTTGATTTCCTTGCTTTTTGTCCTGATGAGAAAGTCATTAATTGTATCAGTTTGTTTATTAGATATATCATTCCCT ATCTTCATGAGTTCCTTCTCAATTCTTCTTTATAACTACAACATGATTCCTTCTCAATCTCGTTATCTTATGTAAGAGCT TGAATGAATTCCTAGACAACTTGTTACGGATTTCTTTTTCAATTCCTAACTTTTTCTCCAGAGAAAATTTTCAACTACTA ATATTTCCTTCTTAAGTGCATGTCCCTAACCAAGATGTGTTCTGTGCATAATGATTGGCAATGTATTGAATATATATATC GTCCATAAAGTGTGCCTATGTTAACCTTAATTACTCTTCTTTTTGAGACTCTTCCGAGTTCATAAAATAGTCGTCACTGT GTTTTGCAAATCACCTGGGTCCAATTTTTCTGTTTCGTGTTTAGATTGACTTCTCTTTCATCATAATCAATTCTGAAACG ACTCACAGATGCTTCTCTTCAGAATTGATTTTAACTTCGGAAACAATTGTATAAGATTTTCCAAACATGTACTAATTTAT ATGAACCCTTTGGAATTTTTATTGTTTGAATGGTATGAAAACCTTATATTTCTTGTTAAGTTTCCAGATTAAGAAATGAA AATGACCTGAAGTAATGCACATGTTCATATAATTTGCATCATTTTATATAATAATAAATAAGTCCCTCCAACCTTTAGTT AATTCCTTTCCTCTTATTCAGTAACGTAACTTCCGTTAGGTAAGTCTCAAAAAGTACTTCAGAGGGACAAATTCTTTAAG TATGTAGATCTGAACCTGACACCCCTCAGAAATTTTATTCACATGTTCATGGTAGAGAAGTTGGTTGCATTCTTTTTACT GAAATTCTTTACTTTAACCTACTACTTCTATACCATATGAATTTAATAAATATCCTCTACCATAACTTCTGACAGTCATT TTTTTTCTTCAGCAGTTAGTACTTAAACATCCCAACAATTACACCCCATTTTTCTAATTCCCTCTCTTCTTAGTATCATA TATACATTCTTTACTTCATTATTTTCTCTTCTTTTCTTACTTTAAGTGTCTACACTTTGCGGATATTCACGAATAATTTT CCTTATTTCTTTGAGACATGCATTTAGCCATTTACTATTACTTTACCATGGCCTTGTACATTTCACTCCATCTAGCTAAT TAAAATATCATAAAGCGTAGTAATTGTTGTAGAGAAATCCCAGCCTGTTCTCATCTTTAAGTCACTTTGTTGCTAATTCT ACCTTCAATGCTTTTAAATATTTTCTGTTTGTTTCAGACTTGAAATGCTAACATAATTGGAGCCTTTGGAGGGTGATTTT GATTGCTGAGCAACAACAACAAAAGAATATGTCAGACAGGTATGAGATTCATGATGAAAACGAGAGGAGTGAGGACCAAG GTGATGACAATTCAATTGGATCTTCTCAGAAATTGTCATCTTTTGACTTGAATGAAGACGCATGTAGTGAAGATAACACT GATATTAATGATGATGAGGCCTGTGATGATGAGATCACAGGTGAGGAATATGAGAAAGGAAAGGATGAAGGCACTTCAAC CAATAGAAGTAGCACATCAAGAGAAGGAAATGGAAGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTCGCC TTCGATGGACTCCTGATCTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGTAAGTAATTATGT GTACCTTCTTATGACATTTTAATATCAACTTATTTTTCATCAGAACCAATTTTAGCACTCTAAAAAACTACTTACAAAAG TTTCTTACCATAATTAATTATGATTTTAGAATCAATTAAGATTTTCAAACATGCTACAAATTAAATATATATGGTATATA TGTTTGTATTCACAGTTAAACTAATACAAAATAGCTTCCGTTCCATAAAAAATACTTGTAGTAGCTTCTTCTCATAACAC TTTTTCATTTAAAATGGAAAGATATTGATTTTTTTTCAAAGCAAAAACCAGATTTTATTTAGGGTTAAAAACTTTAATTG TCCTTAAACTCTGACCAAGGTTTGAAAACCGTCCCTCGCCGGAAAATTATCTGAAAACCGTCCCTAAACTATTGAAAACA AATTTGACCCATCCCTCCGGCCGCCATAGCTCCGGCAAGAGCCTTTTTTTTATTTTACCCATCCCTGAACTTTGAGTGAA ATTTGAAAACCGTCCTTTTTTTATTTTTATTTTTTAAAATTAAAACTCCCTAATTTCTAAGAATTAAATCTACCTAATTT GAAAATTCCCTAATTTCTAAGAATTAAAATTCCCTAATTTAAAATCTAAACTTTGAGCAAAATCTGAAAATTCCCTAGTT TCTAAGAATTAAAATTCCAAATTTTTTCTAACAACAACAAGAAGAAGAAGATGTTGTTGTTGGTGGAGGAAATGAGATGA AGATGAAGATGAAGAAAGAAGAAGAAAAGAGATATCTGAAGGAGAGAGAACTTGGGAATTGTGGTTAAATTGGGAATTCA GGCTTAGATTAAAGGGTATTAGATTTAATTCTTAGAAATTAGGGAATTTTAATTTTTTTTAAAAAAAAGGGATGGTTTTC AGATTTCTCTCAAAGTTCAGGGATGGGTAAAAATAAAAAAAGGGCTTTTGTCGGAGCTAAGGCGGCCGGAGGGATGGGTC AAATTTTTTTTCAATAGTTCAGGGACGGTTTTCAGATAATTTTCCGGCGAGGGATGGTTTTCAGATTTCGCTCAAAGTTC AAGGACGGTTATATATTTTAACCCTTTTATTTATATGAAATAAACTTGAGAACAACCTCTCATGACTTGAATCAAACATT AGACAGCATTATCTCCCGAATGCTATTGGATTTCAAAACTCATCCAGGTGTAGATGAAAGAACAACCTATGCCCTAATTT AAAATTTGTTTTGGTTGAACTTTTATGCATTTTGTTTACCTATACCAAGAAAAAATCTGGTTCACAAATTAAAAGGAAAT GTGTCAAATAACATTAACAAAAATTAAGCATATTGTAAATAACATATATTGAATGTTAGTTGTAAAAATATGGTTCACAG ATTAACTATTTTTAACATGATTCATAATAGAATTCTCCGAACTTTTAATTTAATTGGTGCAGGAGCAACACCAAAGTTGG TGCTTCAGCTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGGTAAAATTGGGGGATGATATA ATGCTCTTTGAATTATATTTTTCCTTGAATATATTGTTGATGAGTATATTACCAAATAAGTAATTTTCATATATAGTTAT ACAATTTTCATTTCAGATGTATCGTAGCAAGAAACTTGATGAGGCTGGGCAAGGTGAGGGCTACATATCCTAAATCTTTT TCAGCGTGCTAATGCAAATGAATCTTTCTGTGTACAATATAAGATAGTGCGCGCAGTTTCAGTCTTTAATTTGTGTCCTA TTAATTTATCCATATGAACTAAAAATTACACACTACTTTGAGTGAGTGCTGTCAATTCTATATTGCAAGCTCGGACTTAG GGTTAGGGTTACCTTGAGTGTTTACCCAAAACTCTTGATTTTTGACAATTGATTGGTAACTACTTTGCAGTACTCAGTCA GCCATACAGATCAACCCAAGGATTTGGTCGTATTTCTCAAGCCCATCAACCCATGATTCCTCATCAACATTTCAAGATGG GAAACGGTGGAATCATTCTTGCAAGTAATTACAATGAGCATAGCTATTTCCAAGGCCTACGGCCGCAACCCTCCTCCTTA TCACATTCAGATTCACATTCAAAGGCCATCGATTCAAGGTAAGTTATACCTATGCATTTCATCACATACCGTAGCTAGAA TTGCCCATTTGGATGGTTTGGTTAACAGTGCACCATCAAGAATAAAAATGTGGTTCACTTTGAATAATTTCATAATCACT TTTATCTGTACAAAAGCTATTTCCAATGCTTCTGTGAGTAGTTTATGATGTTAGAATATAATATAAAACCATTAAAGTGA CCCTTACCCAACAGCTTAAGCTTTTGGGATTAAGTGGTTATTTGACATGGTATCAGAGCATCTATGGCCGAGAGGTCTAG AGTTCGATCCTTGCTCCCCTCACTTTCTAATTAAAAAGTGGAATTTAATTACCCTCATGGTAGGTGGGGGGCCTGTGCAT TTATCCACGCTTCAAGCCCTGCGTGAGAGGGCGTGTTAGAATATAATATAAAACCATTAAAGTGACCCTTACCCAACAGC TTAAGCTTTTGGGATTAAGTGGTTATTTGACATATGAATGTCAGAATTGATTATGATGAAAAGAGAAACTAATCCAAATA TATTATAAGTCTAACATAGTTTGGAAACACACATTAAAATCCTCATGTTTTCCATGCTTTTTGTTGTTAGGCAAATAATT TTCTATTTTTCATGGTTTTACAAGAAATTTTCAAGAAAATCAGTCTTTAGTAATATCCAGATTTGCAATATCTCTCCCCA CAGGCACCAACAATGGTACTCTAATCATCAACCTTTCAGAAGGCCTAGTTTTGAATTTGTCTCCTCAACCTCAACGGCCC TACAAACACAAGGACGATCAATAGCTTCAAACCAAATTCAACTAATGGATACTACAAGACTTGCTCCCATGAGACCAAGC CAATTTCTTGAAGAGAAAAAGTGGCCTCCATTAGAAACTATGAACAATCATCATCATTGGAAGAAAAACTATTCATCACA ATCTGTTTTACATCAATTTGGCACCACTCCAGCAGCTCTAAAACCAGCTGAGTTGAGCATTGGAACCAACACAAGAATCA AGGAATTTCTATCAAACCCTGATGAGCACCACAACCCTTCCAACAGTTTAAAGCTAGAATTTAATCCCCCATTCCGGATT AAGGTAACATATATAAGATCTTTATTCTGGTCTGTATATTTTTTTTCTTTTTTTTCTTAATCATTGATAGATCTCTCTTG CTATTATATGCAGTTGAATCAAGAAAAGTTACAGATAGACAAGCAATGTGTGCCTGATTTGCAACTGAGTTTAAGTCAGA AAAATAGCAACAACGATGGTGGCGAGACCGATCATTCCAGAGAAACGCAAGAAATCAACACAAAACTTTCACTTTCTTAG AATTTAGATAGCCATGTCAATAATGCAAATACCACAAACTAGTCAATCATAAAGTCTGAGAGATGATATATTTTGATTTA AACCATAGGTATCACGAGGCAATCTTGTTCGAGCCGTTATATAAGATTTCTATGGGCAACAAAGTTCTCTTCCAAGTATT TAACGCAGATACATTCACAAGGACTCAAACTCAAGATATTTGCTTAAGTTGTGCTCGTTGATCTATGCGTGCTTGGTGGT TGAGAGATGATATATTGACTCTGAAACAAAGTTACACAGTGACACATGCCTCCACATACCAATTATGGACTTCCCAATAC ATAGGTTTTTTCTTTCCCCTCCCCACAAAAAAAAAACCTGCAGACAAAAAAATAGATTTGAAGTGAGTGTGTTCATGATT ACTAGTTAGTTTCCAAGAGAGATTTTACTTGTGCAAGTATTTGGTCTTACCAGTCACAAATGTTGGGTTTTAAGATAGTT GGCAATTTGGGAAAATAGTTTGATAGAAAACTGAAGTGAGAACCGTGTAGTTTATTGATTTGATTCTTGGTATATAAGTA GAAGCTAGCAAACTTGTAGTTTGCTGCTCACTTGATTTCTTTGCCTAATTGTCTATTTATATGCTTGAATCGCCTCCTAT AATGTTTCTA
CDS sequence (LotjaGi4g1v0378400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGACAGGTATGAGATTCATGATGAAAACGAGAGGAGTGAGGACCAAGGTGATGACAATTCAATTGGATCTTCTCA GAAATTGTCATCTTTTGACTTGAATGAAGACGCATGTAGTGAAGATAACACTGATATTAATGATGATGAGGCCTGTGATG ATGAGATCACAGGTGAGGAATATGAGAAAGGAAAGGATGAAGGCACTTCAACCAATAGAAGTAGCACATCAAGAGAAGGA AATGGAAGAAGAGGTGGTGTGAGACAATATGTTAGATCAAAGATGCCTCGCCTTCGATGGACTCCTGATCTTCATCTTTC CTTTGTGCATGCTGTTGAAAGGCTTGGTGGTCAAGAGAGAGCAACACCAAAGTTGGTGCTTCAGCTAATGAATGTGAGAG GACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGTAGCAAGAAACTTGATGAGGCTGGGCAAGTACTCAGT CAGCCATACAGATCAACCCAAGGATTTGGTCGTATTTCTCAAGCCCATCAACCCATGATTCCTCATCAACATTTCAAGAT GGGAAACGGTGGAATCATTCTTGCAAGTAATTACAATGAGCATAGCTATTTCCAAGGCCTACGGCCGCAACCCTCCTCCT TATCACATTCAGATTCACATTCAAAGGCCATCGATTCAAGGCACCAACAATGGTACTCTAATCATCAACCTTTCAGAAGG CCTAGTTTTGAATTTGTCTCCTCAACCTCAACGGCCCTACAAACACAAGGACGATCAATAGCTTCAAACCAAATTCAACT AATGGATACTACAAGACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAAGTGGCCTCCATTAGAAACTATGA ACAATCATCATCATTGGAAGAAAAACTATTCATCACAATCTGTTTTACATCAATTTGGCACCACTCCAGCAGCTCTAAAA CCAGCTGAGTTGAGCATTGGAACCAACACAAGAATCAAGGAATTTCTATCAAACCCTGATGAGCACCACAACCCTTCCAA CAGTTTAAAGCTAGAATTTAATCCCCCATTCCGGATTAAGTTGAATCAAGAAAAGTTACAGATAGACAAGCAATGTGTGC CTGATTTGCAACTGAGTTTAAGTCAGAAAAATAGCAACAACGATGGTGGCGAGACCGATCATTCCAGAGAAACGCAAGAA ATCAACACAAAACTTTCACTTTCTTAG
Protein sequence (LotjaGi4g1v0378400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDRYEIHDENERSEDQGDDNSIGSSQKLSSFDLNEDACSEDNTDINDDEACDDEITGEEYEKGKDEGTSTNRSSTSREG NGRRGGVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLS QPYRSTQGFGRISQAHQPMIPHQHFKMGNGGIILASNYNEHSYFQGLRPQPSSLSHSDSHSKAIDSRHQQWYSNHQPFRR PSFEFVSSTSTALQTQGRSIASNQIQLMDTTRLAPMRPSQFLEEKKWPPLETMNNHHHWKKNYSSQSVLHQFGTTPAALK PAELSIGTNTRIKEFLSNPDEHHNPSNSLKLEFNPPFRIKLNQEKLQIDKQCVPDLQLSLSQKNSNNDGGETDHSRETQE INTKLSLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 19 | 19 | - | – | |
| MobiDBLite | 1 | 88 | 88 | - | – | |
| MobiDBLite | 20 | 37 | 18 | - | – | |
| PANTHER | 24 | 407 | 384 | 8.5E-82 | – | |
| PANTHER | 24 | 407 | 384 | 8.5E-82 | – | |
| MobiDBLite | 38 | 57 | 20 | - | – | |
| Gene3D | 92 | 152 | 61 | 1.0E-24 | – | |
| ProSiteProfiles | 92 | 152 | 61 | 11.628 | ||
| SUPERFAMILY | 94 | 150 | 57 | 2.69E-14 | ||
| TIGRFAM | 96 | 151 | 56 | 1.7E-22 | ||
| Pfam | 98 | 148 | 51 | 8.2E-7 | ||
| MobiDBLite | 208 | 227 | 20 | - | – | |
| MobiDBLite | 380 | 408 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi4g1v0378400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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