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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0384300 |
| Transcript ID | LotjaGi4g1v0384300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin depolymerizing factor-like protein; TAIR: AT3G46010.1 actin depolymerizing factor 1; Swiss-Prot: sp|Q39250|ADF1_ARATH Actin-depolymerizing factor 1; TrEMBL-Plants: tr|I3SQ66|I3SQ66_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0384300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76289013..76289720) extracted from Lotus japonicus Gifu genome v1.2.
TTAGCTCTATGTTTAATCAATCTTGTCATTTTTTTTTCTTTTTCCTTTCCAACTCTTCTGTGTTAACAAATTTTTTTTTC TTTTTCATTGAGGAAGGTATTTATGTATACATGGGCTTGGTTTTATCTATTTGTGTAACTTGTAAAAAGTCGTCACCAGT GTTATTCAAGCCATTTTGGATTGTTATTACGTGTCTTCTATTTTACAGGCAAATGCAGCATCAGGTATGGCGGTCCATGA TGACTGCAAGTTACGGTTTGTGGAACTTAAGGCAAAAAGGACACACAGGTTCATAATTTATAAGATTGAGGAGAAGCAGA AGCAAGTCATTGTGGAGAAGCTTGGTGAGCCTGCCCAAGGCTATGAGGATTTTGCTGCTTGCCTTCCTGCTGATGAGTGT CGTTATGCTGTGTATGATTTTGAGTTTCTGACAGAAGGGAATGTCCCCAAAAGCAGGATTTTCTTCGTTGCATGGTGATG TTCTGTTCATGTCTTCTAGTTGTCGTCGTTGCCTTGATATTAATCTTTTATCTGAATTGGTTAACTTTCCTTTGAAGGTC CCCTGACACATCAAGGGTTCGAAGCAAGATGATTTATGCTAGCTCCAAAGATAGATTCAAGAGGGAGCTGGATGGGATTC AAATAGAGTTGCAAGCAACTGATCCTACTGAGGTGGGTCTTGACGTGTTCAAAAGCCGTGTGAACTAA
CDS sequence (LotjaGi4g1v0384300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGTCCATGATGACTGCAAGTTACGGTTTGTGGAACTTAAGGCAAAAAGGACACACAGGTTCATAATTTATAAGAT TGAGGAGAAGCAGAAGCAAGTCATTGTGGAGAAGCTTGGTGAGCCTGCCCAAGGCTATGAGGATTTTGCTGCTTGCCTTC CTGCTGATGAGTGTCGTTATGCTGTGTATGATTTTGAGTTTCTGACAGAAGGGAATGTCCCCAAAAGCAGGATTTTCTTC GTTGCATGGTCCCCTGACACATCAAGGGTTCGAAGCAAGATGATTTATGCTAGCTCCAAAGATAGATTCAAGAGGGAGCT GGATGGGATTCAAATAGAGTTGCAAGCAACTGATCCTACTGAGGTGGGTCTTGACGTGTTCAAAAGCCGTGTGAACTAA
Protein sequence (LotjaGi4g1v0384300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVHDDCKLRFVELKAKRTHRFIIYKIEEKQKQVIVEKLGEPAQGYEDFAACLPADECRYAVYDFEFLTEGNVPKSRIFF VAWSPDTSRVRSKMIYASSKDRFKRELDGIQIELQATDPTEVGLDVFKSRVN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 132 | 132 | 9.3E-103 | – | |
| SUPERFAMILY | 1 | 131 | 131 | 1.19E-41 | – | |
| ProSiteProfiles | 1 | 132 | 132 | 37.374 | ||
| CDD | 1 | 131 | 131 | 1.2337E-62 | ||
| PANTHER | 1 | 132 | 132 | 9.3E-103 | ||
| Gene3D | 1 | 132 | 132 | 2.8E-46 | ||
| SMART | 5 | 132 | 128 | 1.5E-56 | ||
| Pfam | 7 | 129 | 123 | 2.5E-35 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Actin filament depolymerization | Disassembly of actin filaments by the removal of actin monomers from a filament. |
Expression pattern of LotjaGi4g1v0384300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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