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LotjaGi4g1v0386000.1

Overview

Field Value
Gene ID LotjaGi4g1v0386000
Transcript ID LotjaGi4g1v0386000.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Homeobox leucine-zipper protein; TAIR: AT1G30490.1 Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein; Swiss-Prot: sp|Q6AST1|HOX32_ORYSJ Homeobox-leucine zipper protein HOX32; TrEMBL-Plants: tr|A0A151UC57|A0A151UC57_CAJCA Homeobox-leucine zipper protein HOX32; Found in the gene: LotjaGi4g1v0386000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:76432274..76439014) extracted from Lotus japonicus Gifu genome v1.2.

GGACAACCAGAGAAAGATAGAGAGAGGTTATATACAAACTAGAAAAATCCAAATGAATTTCATAAACTTATGGAGCCACT GCACCAGGCTTTTCATTTTTGTAGTCCCTGTTTGGTTATTTGAGTTTGCACCCACTGAGATACGTAGTGAGTAACACAAC ACAACACATACATAAAAAAACACACAACAAAACTCTCTTCTATGTTCCATCACTTTCTGTCTCTCTGTTCTCTCTCTCTG TCTCGAGATTGGCGTCTAAGATAGTAGTCTACTAGTATAGGCCAATATAGCACCACCCCTTCTCTTCATTCCTCAACTTC CTTACCAAAGTTTGGATTTTGAGACCATCTGATGCAGGAGAGTGGAAGCTCTCTTGGAGAAGAGAGCCTATCTGAAGAAG AGGACTCAAAGCTACCATTTTTCTGAAACCCCATTTCCTCTAGCTTCATCATTTTCTTGGTTTGTATTTTTCTTTACTTG TTATTATGCCTCTTTCTGTGCTTGGAGACTCATCATCAAGCAAGGACATGGATTCTGGCAAGTATGTGAGGTATACTCCT GAGCAAGTGGAAGCTTTGGAGAGGTTGTATGCTGAATGTCCAAAGCCAAGTTCTTCCAGAAGGCACCAACTCATTAGGGA GTGTCACATCCTTGCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAGAATCGTAGGTAAGGTGTTTGTTTGAATG ATTCATTGAATGGTTTCAGAGCTTCTACTTCATTTTAAAGTTTTGCTTTTTTACTTTTTTACTTTTTGGGTCTGAGTGTG AGTGTGAGTTGAGTTATCTGGCTGACATTTTTCTTCTCCTCACTTGGTCAAATGGTGACTTTGAGCTTCTTACTCTTAGT AAGGTTTCTTAGCTTGCAAATGGTAGTTTATATTGTCATTCAGTATTTTTGCCTTTTTTTTTTTTGCTTTCATGCTTGGA ATGGCATTTCTTTTAATAAACTTGGAATACCATGAAAAAAGGTTTCATTTTTTCATATGCTTTTACTGTTTAGGTTCAAT TTTGAAAGAAATATTCTTATTTGCTAGAAAGAGAAGAGTTTATCATGCCTTCTTGAGAGAAAGACATACTGGGAAAGTTA CTTCATTTTTATCATTTTCCTTTTAGACATTATAGTCATTAAGATTATCGTTATTAGTTATTTTCTTAGAGAAAGGGATT TCTTTTCTGAGTGGAGATAATGACAACAAGTCAATTACTCCTGCTGTTGAAATTTTCTCTTCTGCTTTCCTCTGACTCCC ATTATTTAGGCCATTTTATCATTTTTGAGAAAGATGCTGTAACAGAAATATTGTTATGATCACCTTTTGTTTTGGGGTTG GTTGTGGATGGAATGAAGGATAAAGACAGCTGAGTTTGATGACTTTAGCTTTTACTTTTGACTTTCATATTTTTTAAAAC AAGTATTTGATTCATGCCTCATGTTTTGTTTTAACCTCTAATTTTCCTTCAAAATCTTGTTCCTGCTTTAATATTTTATA TATTTATTAAATGCAAATGAATATTGATTTGTCATGTTTCCACTCTTTTGGCTTCACTCAGTAGTTTTGGTCTGCTTGTG GTATGATGAGAAAAGAAAATTGGGAAACTTCAAAGAAAGAAATGAATAATGAATAACTATCATACAATGTTGTGGCAAAT TTTAAAGGAAAGTGGTTCACACCACATTCTACTTGACATGCTTTTTATAATGGAAATGTAGTTAATGTAGTCTTCAACAC TGTTTCCTCATTGTTAACATGACTGATGTTGCCAATTTTCTTCTATAGATGCCGCGAAAAGCAGCGCAAGGAATCATCTC GCCTGCAGACAGTGAATAGAAAGCTGACTGCGATGAATAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAAGCAGGTC TCAAAGTTGGTTTATGATAATGGATACATGAAACAACAAGTGCAGACCGTAAGTACCTCTCTCTTTGGGTAGTTGCTCTT CTTAATTCTCCTTCTGAATGTGTTGTTAATGAAAAATCTTTTTTTGATTATGTCTTGGCAGGCATCTGCTACTACTACAG ACAATAGCTGTGAGTCTGTGGTAATGAGTGGTCAGCAACACCAACAGCTATTCCCCAAAACTAAGCATCCCCAGTGGGAT GCTAATAACCCAGCTGGGTAAGTAACTCAATGTATGCTAACAAATTTGTTCGACATATATTCACTTAATTGTGTCGGGAT GTCCTAATTCTCTTTTATGCCAGTCTTCTCGCAATAGCTGAGGAGGCCCTGGCAGAGTTCCTTTCCAAGGCTACCGGAAC TGCTGTCAACTGGGTCCCAATGATTGGGATGAAGGTATGATCTTCTGATAATTCTTCATGGTCATTGCATGTATAAATTG TTCTTTGGTACATTTCAATATTTATATTTTCCTTGTCATGCTTTCTAATTTCTCTCTCATGTAGCCTGGTCCGGATTCTA TTGGCATCGTTGCTGTTTCCCGCAACTGTCGTGGGGTAGCAGCCCGAGCCTGCGGCCTTGTGAGCCTTGAGCCCGCAAAG GTGTGTAGTATATTGATGCATGTGTATTGTAAATTTTCTTCTTGTCACTGAGCAATGAGACTTCAATTTTGTTACTTAAT TTCATACTTGATTGTTGCAGGTTGCTGAGATTCTTAAAGATCGTCCATCTTGGTATCGTGACTGCCGATGCCTCAATGTT TTGAGCATAGTCCCCACTGCAAATGGGGGCATAATAGAGCTCTTGTATATGCAGGTCTAATAGTTATTTTAATCTACAAA AGATGTCTAACTGCAGTCTAAATTACTTTTTGATTTCTACTATGTTGTTTTCTTGATATTTGGGTTTGGATTTTCCTTAG ACCTATGCTCCTACAACATTGGCTGCAGCAAGAGACTTCTGGACACTACGATACACAACAAGTTTGGAAGATGGAAGTCT TGTGGTACGGAGCAGAATCTTGACTGTTGTGTTTTTCTTGATTTAGGATGTGACTTCCTTCTTAGCAAGCATTTGCCTTG AGAAAATAACTGCCTATTGTTTATCTACCTCGCAGATTTGTGAGAGATCCTTGACTTCTTCAATTGGTGGTCCAACAGGG CCTCCTGCTTCAAGCTTCGTAAGAGCTGAAATGTTTCCTAGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTAT TATTCACATTGTTGATCACGTTGATTTAGATGTGAGGATGACGATGCAATTGAAGTCATTTTAAGATTTCTACATTTTTG AATTTTGCTCTCCTAGTCCTAAGTATATTAACCTTGTTGTTGATATAGATTCGGAGTGTTCCTGAAGTATTGAGGCCCCT CTATGAATCACCTAAAAATTTGGCTCAAAAATCAACTATTGCTGTAAGATATCTTACAAGTGACAGATCTACATGTTTGA CCATGTCAAAATTTGTTAACAATTCTGAATATACTGTACAGGCTTTGCGACATGTAAGACAAATTGCACAAGAATCAAGT GGAGAAGTTCATTATGGTGGGGGACGTCAGCCTGCTGTCTTGAGGACATTTAGTCAACGACTTTGCAAGTAAGACCATAT CATGCTTTGTTTTTCCAGAATCATTGCAAAGTTGGGCATTTGACTAAGCTTTGCCTTCCTTATTGACCAATAATTATTTG AAATTTGATTCTTAGAGGGTTCAATGATGCTGTCAATGGGTTTGCGGATGATGGTTGGTCACTGATGGGTAATGATGGGG TGGAAGACGTGACAATAGCCATAAACTCATCTCAAAACAAGTTTTTTGGCTCTCATTATAATACATCGTTGCTCCCACCA TTTGGAGGTGGGGTCCTTAGTGCCAAGGCATCAATGCTGCTGCAGGTACCTCCTAAGCAAACAAATACATGTGCAAATTA TTATTTTTGTTGAAATTAACTCTAGTAAAATGATAATTGATTCCTAGGACTTTTCCTCCATGAGGTCCCATATTTTAACT TGCTGTCATCTTCTGGATTTTCAGTTTATTTATTTATCTTGGTTATTATTGATTACAAGACGTTGCTCTGCAGAATGTTC CTCCTCCTTTGCTTGTTCGCTTCTTGAGAGAGCATCGTTCTGAGTGGGCTGATTATGGAGTTGATGCATATTCAGCTGCA TGTCTTAAAGCTAGTCCTTATGCAGTTCCTTGTGCAAGGCCCGTTAGCTACCCCAGCAGCCAGGTCATTTTACCCCTTGC TCCTACTGTGGAGCATGAGGAGGTATTAATCTCTTCAAATTAGTGATGACCAGTGAACTTTATTCTGTCTTGCTATTATG CATGCTCATTTGCCACCCACTGTAATGATGCAGTTCTTGGAGGTAGTTCGTATAGAAGGTCATGTTTTTCCCCCTGAAGA TTTGCCTTTGGCTGGTGATATGTATCTCTTGCAGGTAAATGTCATTTGTCTACATATTTGTTTAAGTATTTAGCTGGAAA CTATTGCTTTTTCATTGAATGATGCTTATTTACTTTTTACTTACGCTACTTGATATGGCAGCTGTGCGGTGGAGTTGATG AAAGTGCAATTGGAGCATGTGCACAGCTGGTGTTTGCGCCTATTGATGAATCATTTGCAGATGATGCTCTCTTACTGCCT TCTGGTTTCCGCATCATAGCATTGGATCCTAAAACAGTTCAGTTACACTCTAAGCTATTTAATAGTTTTGAAGGAATATG GTTATGAATTTTTGTCGGTTATTTTCCTTTCTTTTTCATTAGCATTTTAACTACTTGGACCCTGAAACGTTTTGCTTCGT TTGGAAATGCGTAGTCTCTGAATTGTTATGAAATTCCAAATTCAACCATGGAATTAGTAAAGGTAGAATGTTGTAGTTTA TGTAAATGCATGTGTATAAATCCATCCTATATACCCTTATAGTTGCCAGTCTTTTTTTACTATCAAGGTACCTTGTTTCA CCCCCCCCCCCATTTTTCTTGTCAGGATGGGCCGGCTGCAACTAGGACCTTGGATTTGGCATCGACACTGGAAATAGGAT CTAGTAATGCTCGTCTAGCTGGTGAAGGCAATTTGAACAACTACAACCTGAAGTCGGTCCTTACAATTGCATTCCAGTTT TCCTTTGAGAACCATTTGCAGGACAATGTAGCTGCTATGGCTCGCGATTATGTGCGTAATGTTGTGCGATCTGTTCAGAG GGTTGCCATGGCAATCACTCCCTCTCCGTTCAGTGCCCAGCTAGGGCAGAAGTCCCTTCCCGGCCCCCCTGAGGCTCTTA CTTTAGCACGATGGATCTATAGAAGCTACAGGTTTGTGCCATTAGTCTTGACTCCAACTCTCTTTTTGCTGTTATTAATT AAGCTTCCTCAACCATTTGATTTTCTTGTCTAGAGTTGTCTTGAAGATTAGTTAAAATTACTTGTCTGTTATTTGCAGCT TATAATTTTATTTAGGTTCTAATAACAAGATTTTGTCTGTTGAGAATTTTGACTTCATACTTATAACCTGCAGTTTGCTG TTTAGCTATATCCTGTGTGATTATCTGGTGACGGTTCATCTTCAGCCACAAATTGCATGGATATAAACTCACTTGATTCA CTGGAAGTGAAATTTTACCATCTTTTTTCTTGTGTCTGGTCTGATAGAAAATAATGTTTCTTTCAGGGTCCACACCGGCA CTGAGCTTTCTAGAGTTGAGTCCACATGTGGCGATGCAATCATAAAGAAACTTTGGCACCATTCAGATGCAATAATTTGC TGTTCTATAAAATCAATTGTAATGACTTGCTGCTTCTCTATTAAAGTGCTTGTCATTTGCGCAATAGCCTCTATTAATTT GTCTATTGATGCCAAAATTACTGCAGGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACC ACTCTCGTTACTCTTCAAGATATAATGCTCGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTCTGCATGGAGTTCTC CAAGATAATGCAACAGGTGATTAACTTTGTAAACTTCAGATTATCTGTTTTGGCAGGGCTTAAAAATTAGTTTAATGGCA TGTTTAGATCTGACTTTAGACTCAATTGTAGAAGAATTTCCAAACATGCTATAAGCCATTTTTCTTATGAGTGCTGGATT GAAATAAGAAATGGTTCCGCATTGGAAATTGCAGAACAAGTTATAACAAGTTAAAGAATCTGAGATTTTCTAGAACTTGG GGTAGGAAACTAAGTTATAACTTATAACATGTTATTTCTATCTTCTACATGCATATGTTTGAGCTGTGATTAGTGTCTTA TGCAATAATTTCTTTACATTTCAGGGATTTGCATATCTGCCAGCTGGAATATGTGTATCCAGTATGAATCGACCTGTGTC GTATGAGCAGGCCATAGTATGGAAAGTTCTGGATGACCACGATTCCAATCACTGCCTTGCCTTCATGTTCATGAACTGGT CTTTTGTTTGATGGGGACACCATCATTAAGATACTTATATCTAGTAATTTATTTTGAGTACTTTCTGTCACAGACAAATG TAGTATGGTTATGTGTGCCATTAGTTCTACCAAGTACCAAGTATGTTCCTTTCTAAACTGATGACTGTATAACTATCTTG TTGCCTATGTAGGCCACTTATAATGTGTTTGCATATATGTTGCTTTTTGTCCCCTTTTATGTTTTATTCATAGGACTTTC CGTGTCAAAAGTTACTGCACG 

CDS sequence (LotjaGi4g1v0386000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCCTCTTTCTGTGCTTGGAGACTCATCATCAAGCAAGGACATGGATTCTGGCAAGTATGTGAGGTATACTCCTGAGCA AGTGGAAGCTTTGGAGAGGTTGTATGCTGAATGTCCAAAGCCAAGTTCTTCCAGAAGGCACCAACTCATTAGGGAGTGTC ACATCCTTGCTAACATTGAACCTAAACAGATCAAAGTTTGGTTTCAGAATCGTAGATGCCGCGAAAAGCAGCGCAAGGAA TCATCTCGCCTGCAGACAGTGAATAGAAAGCTGACTGCGATGAATAAGTTGTTAATGGAAGAGAATGACCGTCTGCAGAA GCAGGTCTCAAAGTTGGTTTATGATAATGGATACATGAAACAACAAGTGCAGACCGCATCTGCTACTACTACAGACAATA GCTGTGAGTCTGTGGTAATGAGTGGTCAGCAACACCAACAGCTATTCCCCAAAACTAAGCATCCCCAGTGGGATGCTAAT AACCCAGCTGGTCTTCTCGCAATAGCTGAGGAGGCCCTGGCAGAGTTCCTTTCCAAGGCTACCGGAACTGCTGTCAACTG GGTCCCAATGATTGGGATGAAGCCTGGTCCGGATTCTATTGGCATCGTTGCTGTTTCCCGCAACTGTCGTGGGGTAGCAG CCCGAGCCTGCGGCCTTGTGAGCCTTGAGCCCGCAAAGGTTGCTGAGATTCTTAAAGATCGTCCATCTTGGTATCGTGAC TGCCGATGCCTCAATGTTTTGAGCATAGTCCCCACTGCAAATGGGGGCATAATAGAGCTCTTGTATATGCAGACCTATGC TCCTACAACATTGGCTGCAGCAAGAGACTTCTGGACACTACGATACACAACAAGTTTGGAAGATGGAAGTCTTGTGATTT GTGAGAGATCCTTGACTTCTTCAATTGGTGGTCCAACAGGGCCTCCTGCTTCAAGCTTCGTAAGAGCTGAAATGTTTCCT AGTGGCTATCTAATTAGATCCTGTGAGGGTGGTGGATCTATTATTCACATTGTTGATCACGTTGATTTAGATATTCGGAG TGTTCCTGAAGTATTGAGGCCCCTCTATGAATCACCTAAAAATTTGGCTCAAAAATCAACTATTGCTGCTTTGCGACATG TAAGACAAATTGCACAAGAATCAAGTGGAGAAGTTCATTATGGTGGGGGACGTCAGCCTGCTGTCTTGAGGACATTTAGT CAACGACTTTGCAAAGGGTTCAATGATGCTGTCAATGGGTTTGCGGATGATGGTTGGTCACTGATGGGTAATGATGGGGT GGAAGACGTGACAATAGCCATAAACTCATCTCAAAACAAGTTTTTTGGCTCTCATTATAATACATCGTTGCTCCCACCAT TTGGAGGTGGGGTCCTTAGTGCCAAGGCATCAATGCTGCTGCAGAATGTTCCTCCTCCTTTGCTTGTTCGCTTCTTGAGA GAGCATCGTTCTGAGTGGGCTGATTATGGAGTTGATGCATATTCAGCTGCATGTCTTAAAGCTAGTCCTTATGCAGTTCC TTGTGCAAGGCCCGTTAGCTACCCCAGCAGCCAGGTCATTTTACCCCTTGCTCCTACTGTGGAGCATGAGGAGTTCTTGG AGGTAGTTCGTATAGAAGGTCATGTTTTTCCCCCTGAAGATTTGCCTTTGGCTGGTGATATGTATCTCTTGCAGCTGTGC GGTGGAGTTGATGAAAGTGCAATTGGAGCATGTGCACAGCTGGTGTTTGCGCCTATTGATGAATCATTTGCAGATGATGC TCTCTTACTGCCTTCTGGTTTCCGCATCATAGCATTGGATCCTAAAACAGATGGGCCGGCTGCAACTAGGACCTTGGATT TGGCATCGACACTGGAAATAGGATCTAGTAATGCTCGTCTAGCTGGTGAAGGCAATTTGAACAACTACAACCTGAAGTCG GTCCTTACAATTGCATTCCAGTTTTCCTTTGAGAACCATTTGCAGGACAATGTAGCTGCTATGGCTCGCGATTATGTGCG TAATGTTGTGCGATCTGTTCAGAGGGTTGCCATGGCAATCACTCCCTCTCCGTTCAGTGCCCAGCTAGGGCAGAAGTCCC TTCCCGGCCCCCCTGAGGCTCTTACTTTAGCACGATGGATCTATAGAAGCTACAGGGTCCACACCGGCACTGAGCTTTCT AGAGTTGAGTCCACATGTGGCGATGCAATCATAAAGAAACTTTGGCACCATTCAGATGCAATAATTTGCTGTTCTATAAA ATCAATTGCATCTCCAGTGTTCACCTTTGCAAACCAAGCTGGACTTGACATGCTTGAAACCACTCTCGTTACTCTTCAAG ATATAATGCTCGATAAAGTTCTTGATGAAGCTGGCAGGAAGATTCTCTGCATGGAGTTCTCCAAGATAATGCAACAGGGA TTTGCATATCTGCCAGCTGGAATATGTGTATCCAGTATGAATCGACCTGTGTCGTATGAGCAGGCCATAGTATGGAAAGT TCTGGATGACCACGATTCCAATCACTGCCTTGCCTTCATGTTCATGAACTGGTCTTTTGTTTGA 

Protein sequence (LotjaGi4g1v0386000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MPLSVLGDSSSSKDMDSGKYVRYTPEQVEALERLYAECPKPSSSRRHQLIRECHILANIEPKQIKVWFQNRRCREKQRKE SSRLQTVNRKLTAMNKLLMEENDRLQKQVSKLVYDNGYMKQQVQTASATTTDNSCESVVMSGQQHQQLFPKTKHPQWDAN NPAGLLAIAEEALAEFLSKATGTAVNWVPMIGMKPGPDSIGIVAVSRNCRGVAARACGLVSLEPAKVAEILKDRPSWYRD CRCLNVLSIVPTANGGIIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSIGGPTGPPASSFVRAEMFP SGYLIRSCEGGGSIIHIVDHVDLDIRSVPEVLRPLYESPKNLAQKSTIAALRHVRQIAQESSGEVHYGGGRQPAVLRTFS QRLCKGFNDAVNGFADDGWSLMGNDGVEDVTIAINSSQNKFFGSHYNTSLLPPFGGGVLSAKASMLLQNVPPPLLVRFLR EHRSEWADYGVDAYSAACLKASPYAVPCARPVSYPSSQVILPLAPTVEHEEFLEVVRIEGHVFPPEDLPLAGDMYLLQLC GGVDESAIGACAQLVFAPIDESFADDALLLPSGFRIIALDPKTDGPAATRTLDLASTLEIGSSNARLAGEGNLNNYNLKS VLTIAFQFSFENHLQDNVAAMARDYVRNVVRSVQRVAMAITPSPFSAQLGQKSLPGPPEALTLARWIYRSYRVHTGTELS RVESTCGDAIIKKLWHHSDAIICCSIKSIASPVFTFANQAGLDMLETTLVTLQDIMLDKVLDEAGRKILCMEFSKIMQQG FAYLPAGICVSSMNRPVSYEQAIVWKVLDDHDSNHCLAFMFMNWSFV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 17 17 -
MobiDBLite 1 20 20 -
PANTHER 10 847 838 0.0
Gene3D 10 85 76 1.8E-19
PANTHER 10 847 838 0.0
ProSiteProfiles 14 78 65 15.58
SMART 16 82 67 2.8E-16
SUPERFAMILY 18 80 63 8.13E-17
Pfam 19 77 59 2.0E-16
CDD 19 79 61 7.16484E-17
CDD 71 110 40 1.00839E-6
Coils 88 108 21 -
ProSiteProfiles 158 358 201 24.799
CDD 162 378 217 1.6952E-70
SMART 167 377 211 5.8E-45
Pfam 168 376 209 1.3E-46
SUPERFAMILY 168 379 212 6.04E-34
Gene3D 201 384 184 9.6E-18
Pfam 702 846 145 4.5E-47

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Molecular function Lipid binding Interacting selectively and non-covalently with a lipid.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0386000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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