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LotjaGi4g1v0388000.1

Overview

Field Value
Gene ID LotjaGi4g1v0388000
Transcript ID LotjaGi4g1v0388000.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|I1K499|I1K499_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0388000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:76634338..76641834) extracted from Lotus japonicus Gifu genome v1.2.

CATTCTTTGACAACGTAAATTACTACTATAGTCCGTGTTGTTGTGTTGAGCACTCTGTGTGTTGTGTTGTTGTTTCTCTT CTCTCTCGTCGACTCGAGTCTTCAATCTCACCCATCACATCACCACCATGTCCTTCAAATCGCGATCCCTTTCCTCCTTC TTCTTCCTCTTCCTCTTCTTCTTCTCTTCTGCTTACGCTTCCGACTCAGATCACAAGGTAATTTCTCCATTTCGCGAACC CCCTTTTACTTCGTTCTTCCCGATCCTACGCTTCGATCTACTTTCTGTTTGCTGAATTGGGATTTCGATCTACCTATAGT TTGTTTTTTTAGCTGTTACTAGCTCCGAATTTGAATCTGTTAGCTTCTGATTTTGTTTTAGAACGGAATGGTTGGGTTTT ATAGTGTTAGATCTCAACTGGGTTTTGGCTTGTGCTTACCCACCTGAGTATTTGTCAATGTAGGTGTTTGCTGTTCAATG TTTTGCATTTTCTTTGTGAGTGAGATTCAATTCAATGTTATTAATGGATGATCCCGGATAATTTTATTTATATTTTTTTT AATGTTTGAAAAATGTAAGCATATGGTGCTCTCTGTGCTATTTTAGTTTCCAAGTTGATTGTTGAGTTAAGGTTCAGTTG TTTTGAAACACCCAACTGCGGCGTTAACAACGTGCTTTATCATTAGGGTTTGATATCTAGTTTATGTGTATCACTTGTCA TTGAAGTCTTAAAGGGACCCAAGATAAATGTGCAATGATGCTTTGCCTGAAATTGGACAGAGATGACAATTAGATATTGT CAGAATGGAAGAAAAATAGTTTTTACTTGTCTCTGCTATCTATCTGTCCGCAATCCTTTTGGTGGTAAAGATTGATGTGA AGGGAGATAACCTTATTTATCTAGTGCATGTTTGGATATCTGATTGGAGAAGCTTGCTTCAAAATGGAAATCCAAACATG AACTTGACTTTTTTGGTTAATCTCTCTGCTGTCTGGTAGCAATCTTTCTAGAGTTAAAAAGGTTCAAAACTTCAAATGAG AAATATTGGTATTATCGAGTATGTAGGATTCACTAGGCATCAGGATTTTTAATGTTGGATTACTTGTTAGATCAGGGCAT TATCTTATGTTTTATGTCCAACAACACTATTATCTGGTTCTCAATATCTAAAATTGCCTTCCATGATGGAGACTTTGGAT TTTGATTTTTTAATGCAAATTAGTTTGATATCATGTGGACACCCATTGCGTCATGTTATTAATGTTTGCTCGAAGCCTTA AAATATTGAGATTCATGTTATGCTCTGCCAATCTGTGGGGGTTGGATGTTTGATTAGGAAATCTACGAGCGTGTTTGGAT ACGGGCTTATATACTAGAAAATGCACTATATAAGCTCCAATAAGTGCTCTTTGGTTTACATCCAAATGGGTACATGATAT AGTTGACTATCATACAGTGAACTGAACTCAAATCACATCGATGACTTAATTTTTGTTGCTATTTTTTACTTAGACCAATG GTCAGTTTTGTGATTCTACAAATCGTACATATAACTTTGCTTCATCTATGGCTGTGGTTTCTCTACTCTCCATATCCTTA ATCTGCTGTAACTTTAAATCCAACCTATCAGTAATCTCTGAGTCTTTTTTCCCGCTTTGCTATTGAAACAGATTAAATAT CTATTTTTCATTTGTATTTTCAAGTGGCGATTGGCTTCTCTTTTAAATGGATGTATTTTCTTTTCATTGCAGTATCAACG AGAAGACCCAGTTACCCTTTGGGTTAACAAAGTTGGTCCATATAACAATCCACAAGAAACATACAACTATTACAGCCTCC CATTTTGCCATCCATCTAGTAGTTCGAGTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAACGAACTC ATTGATAGCCAAATTGAGATAAAGTTTCTAAGTATGGAGGCTTTTGTTGTACTATTTATTTCATTAAAGAACTCAATAAA ATAAACTAGCTTTAATGGATGCTCCTTTTTTCAGGAAATGTGGATAAGACTGTCTTTTGCCAGATAGATCTCAGTGATGC AAATGTTAAACAATTCAAGGATGCAATTGAGAATAACTACTGGTTTGAATTCTTCATGGGTATGTTTTGCATGGTTTCTT GCACTTATTACTTTGAGAACTTGTAGAATGATTGTAATCTCAACAAATGTTGAAAGCTCAAAGAAAATTTTCTTTGGTCA TCACGTTAACACAGAGGATAACATAGCTACAACGCAGAAATGTATAGCAGAGGTTACCATAAAACACTCACAAACTAAGA AACACATATCACTACACTTGGGGGAGAACCCCTATTTGACTGAACAAAGGGGTTGAGGTGAATAATATTTCCATTCCACA GGACCTATCCCCTTGCTTGTTGTATTTGCTGTCCAATTCACTGTATTACTTCACAGCCTTGGAATCATATCAGGGAGATC TCATTAGAAGAGGCGAGTAGTAATTTTAGGTAATGAAAACTTCCAATCAATCCCCGAGGAGACTGAGCAAGCAATGAAGT GGCTTGAGAATCAGTTTCAAACTCACCAGAACAGTGAAGTGCTCATTTGTAAACTAAGTCCATTCCTTGATGTTATAGAA TTGGATCAGAATCAATTGAAAATAAACAGTTTTTAAGATAAAGTCAGTCCCAGCTGAGTATCAGATTAATACGAGAACTA AGATTAAGATGTTAATACAGAAAGAAATCAGAAACAGATCCTTCAAGTTATCCGTATTCATTTCTCTAACCCCCACTACT AATTGACAGTTATTGTAATGAAAACTACTTGTGATTCTAATCTTCTATTACCAATTTTCCCCTTCCTACTATAATCCCTC ATAGTGAGACGTGAGGTTTGGGCTTCTGGAGTAAGACAAACACTTGAATCTAGTTCTGGGTTTCGCTATTTCATTTCAAC CACACCGATAGCTCAATGGTGATTGTTCATAAGGATACCAATCTTTGTCAAAGAACAGAGAATTGAAATTTCTTGGAAGT TTGGATCACACTTGTACATAATGTCTTTGGAAATGTTGGAAGGCCTATTTTAATTCTACTAGATCAAGTTATTGACTCAT TGAATGCATGTATTTATTGGTTTTTGTACAACTTAGATGAATAGGATTTCTAAGGTTCCTTTAAAATTTGAGAGATCAAC TTGATCTGTTTCTTGAGGCTGTGATGGTGGAATATTTTGTTTTTGGTTGCACCAAGGTATTCCCACAGCCGGCAACCATG AGATGAGACTAATCTCCACAATGCTCTGAGATCACATGGTGCACAAATATAAACATAAAATAAGTTGAAAGTTTATGACA CATCTTGCTTGGCTTTCTCAGGTGGCTGGGTGTTAACTTAAATCACGTGCATTCTTTATCTATGTTCTTTTCACAGCCAA GACCGACACAGTTTAATAGAAGATTAGAAGTAGAAAATTATATTATGTATTCCGATTATCTGGTTGATTGGGAACAGATT CATTAGTAGTTGAGCTGCTATTTTCATCATGTATGATTATTGACATAGAATGCTTGAAACACTGACTATATATTCTTCAG CATGGAAGCAAAGCTTTGCTGCATTTTGATCTACTAGGCTGGGTATTTTGTGATATTTGTAGTCATCAGAACTGGAAGAA ATATCAAGTTAAGAATTCTTGATGTAAAGTCATTTCTTAAACATTCTTGATCTTGAATACCTTAGTGAGTGTTAGTTTTC CATATTATAAGCACTAGAACCGAAAGAAGTATGAAATTAATAACTCTGTGTGAAGTAATTTTCTTATGCATTTTATTATG TTTTTGCCTTAATGTTGCCAATGAGAATTTGTTGCTAGCTCCTCATTATTTGTTCTTATTTAGTAATTCCTGCTTTTCCC TCTTCTTTGGGTGAATAACTTACTTGCTCTTGTTTTTTCATATTGTTTTTTATCTGCTCTGCGATGCGCTAAATACAAGT TCAGATGATCTACCTTTGTGGGGTATGGCTAGAACTGTCTCTTCCTCTTTATCTTTATTTGATATGATTTTGTATTTCAT TTATTCATCATTACTGACTATGCTTTTTTCCCCCTGTTCAAGGATATGTTGGTGAACTGCATCCTGATAAAAATAGTGAT AATGGCAAGCATGTCCTTTACACACACAAGAATATTATTGTTAAATACAACAACGATCAGGTCAGAAGTTATTTAAATTT CGTACTCTATCTTTTGAGGGGTTTTGAATCCTTGAAGTTTCATATTTAGGTCTATTTCCTTGCAGATTATTCATGTTAAT CTCACTCAAGATGTCCCAAGGCCTTTGGAGGCAGGGAAACGTTTGGACATGACATATTCTGTCAAGTGGATTTCTACTAA TGTAACTTTTGGACGTCGCTTTGATGTCTACCTGGACTACCCTTTCTTTGAGCATCAGGTACAGCTTTGTTTTTAAGATT GAAATGGTGTTTACAATTAGTTAGTTCTGGCTATGTGTTCATCCATGTTGATCCTACCTTCGCCTGTCACTGAAAATTTT GCTCTTTTTTCCCTTCTAGATCCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGT CAATGATATTAATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAAACTCTGGTGATG GTTTCATGACTCATATCTGTTCTTATTTATGGGATATGGATTTTCTCCCTAGAAAAATCGTTCTAATTTTCAAAATTTGG TCATTATTTACATGCTTACAGGAGAGAGATGTTAGTGAAGAGTCGGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCC TCCTCGCTATTTAGTTATTCTTTCAGCTGTTGTTGGCACAGGTGCACAGCTAGCATTGCTGATTCTTCTTGTTATCTTGT TGGCTATTGTTGGGATGTTGTATGTCGGGTATGCACATAACCTTCAACTGACTGTAACATTCATCTGAATGATGTATTCA ATGACATTGTAGTTGTGCATAAATTTTACTTCATGTAATAAGCGCATGACTATTGCTGCTTGCGTATCAAATATTTACAA AACTTCTAGTTTTTTTGTATGGACTTTATGTTGTTTGTCCTTTGCTCTTTCATTCATTTTCAACTAAATTTCCTTCATTG CTTGTCTCAGGCGTGGAGCAATTGTCACAACCTTTATTGTTTGTTATGCTCTCACATCATTCATTTCTGGTTATGTGAGT GGGGGAATGTACTCGCGAAATGGGGGTAAGAATCTCGTTTAAGTTTGTCTGGGTGGCTTTGTCTAGGCCCCCCCTCTCTC TCAATCTTTATATAACGCTTGTTATCTGTTTGTTAGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTATGTTC CCATTCATGTGCTTTGGAATCGGCTTTGTCTTGAACACAATTGCTATATTCTATGGCTCTCTAGCAGCAATCCCATTTGG CACAATGGTGGTTGTTTTTGTCATTTGGGCTTTCATCTCTTTCCCTCTAGCACTTTTAGGCACAGTTGTTGGAAGAAACT TTAGCGGTGCTCCAAATAATCCTTGTCGTGTAAAGACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCC TCAGTGGTTTCTCTTATGGGAGGACTGTTACCTTTTGGCAGCATATTCATTGAAATGTATTTCGTATTTACTTCCTTCTG GAATTACAAGGTGAATTACTGCGCTATGACTTGTTTCAGTAATAAACTTTCTATTCTACTTATTGGTTTGGTTATGAAGG TTACTTGTTCCTTATCAGAAAGAGCTATATCAAGGAAAATTGTCCTGATAATGGTCATTTTAATTAAATATGTTTGTATT TCAGTGGAAGCTGAGTGAATACAAGCACTGTTAGCTTATATATTTTTTCCTCCTTTGTGACAAGCAGGTGTACTATGTGT ATGGATTTATGCTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTGTGACAATTGTGGGGACTTACTTTTTGTTA AATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCGACAGCTGTTTATGTGTATTTGTACTCGAT ATACTACTACTATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTC TTGGACTAGGAATTTTATGCGGTACGTGTTCTTAAGTTTTATGCTGAATGAACCCCATTTCCCTATTACCTGCATAAATG CTTTTATGCTTATTACTTGAACTGGGTTAAAGTTTTTCTTCTAACGTGCAGGTGCTGTGGGATTTCTTGGTTCAAATTTG TTTGTGAGGAGGATCTACAGAAATATCAAGTGCGATTAAGGCTTTCTGAGTCAGACCTGAGCACCTCCATAGGTTTGATG CTAAAGACAAGAAATTTCTTGGAGGAAGCCTCCGGTCATGTGTGGGGAACCTAACAATGTTCACAGGTAGAGAATCACAG GGTTGAGGATGAGGATGTATTCTTTTTTTATATTGGGGAAGCCCTGAGATTTTTTCCCCGGCTGTAATTGACCGTCTTTA TAATTTTATAGTTAGCACAATATCCAACTCTTGCTAGTCTTGTGGCTACTGTTTCATCCCCTTAATAGGGGGCCCATTGA AGGACTCTTGTCTAATTCCCCAACATGGTTTCAAGTATTCAATATATGTATAGAGGGGATGAAGTTTTGTGCGTCTGAAT TTTGTATGAAGATCCTGAATATCATTCTTATTTTATGTACTTCACTCACACCCCTTGTTTAAATTTTAATTGTTGGTTGC ATTGTATTTACTGTTTGGTTTTCTTTCGACTTTGTAAATATTTTTCATGTCATCATGTCTGAGACTGAGTTATGGCTGGA AAGTGAGACCGGACCATTGTTGATCTTATAATATGCTACTTCTTAAGCTACATTGTAGTTGTTATTAGGCAAACAATTTA TGCTGCTGTACTCCTTGTCAGTGAACTATCTTTGTCAGTTTTGTATTTCACTCTGGATTTCAGTGGACTTAATGTGTGAC TGCATGTTAGGTGAAGCTTCAATATATGTTTTATTCAATTGCTGATGTGTGAAAAATTTAGTTAGATAAGAAAAAATTAA AAGGAAGCAGCAGGTAAATAATGGTATGATTGGTAGAGATGTGCTGGGTCAGTAATCACTAATCAGGTAGCTGTATTAAC ATAATTATGCAGCATTCGGAAGTGCATAAGCAATCAATGTGTTTTGACAATCTTATAACAAAGTTTACGATCTATCTATC AGCTCTTTTAAGCTTATTTTTATAAACTTCTCAGCTTACATATCTATTTTGAGCTTATTTTAATGAGATTTAAAATAAGT TTATGAACTAGCACTTATGAGACCGTGCTTGTATAAGAGAACCTTATTTGAAACTAT 

CDS sequence (LotjaGi4g1v0388000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCCTTCAAATCGCGATCCCTTTCCTCCTTCTTCTTCCTCTTCCTCTTCTTCTTCTCTTCTGCTTACGCTTCCGACTC AGATCACAAGTATCAACGAGAAGACCCAGTTACCCTTTGGGTTAACAAAGTTGGTCCATATAACAATCCACAAGAAACAT ACAACTATTACAGCCTCCCATTTTGCCATCCATCTAGTAGTTCGAGTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTC CTGGGTGGCAACGAACTCATTGATAGCCAAATTGAGATAAAGTTTCTAAGAAATGTGGATAAGACTGTCTTTTGCCAGAT AGATCTCAGTGATGCAAATGTTAAACAATTCAAGGATGCAATTGAGAATAACTACTGGTTTGAATTCTTCATGGATGATC TACCTTTGTGGGGATATGTTGGTGAACTGCATCCTGATAAAAATAGTGATAATGGCAAGCATGTCCTTTACACACACAAG AATATTATTGTTAAATACAACAACGATCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAGGCCTTTGGAGGCAGG GAAACGTTTGGACATGACATATTCTGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCTTTGATGTCTACCTGG ACTACCCTTTCTTTGAGCATCAGATCCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTG GTGTCAATGATATTAATGCGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAAACTCTGGA GAGAGATGTTAGTGAAGAGTCGGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTT CAGCTGTTGTTGGCACAGGTGCACAGCTAGCATTGCTGATTCTTCTTGTTATCTTGTTGGCTATTGTTGGGATGTTGTAT GTCGGGCGTGGAGCAATTGTCACAACCTTTATTGTTTGTTATGCTCTCACATCATTCATTTCTGGTTATGTGAGTGGGGG AATGTACTCGCGAAATGGGGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTATGTTCCCATTCATGTGCTTTG GAATCGGCTTTGTCTTGAACACAATTGCTATATTCTATGGCTCTCTAGCAGCAATCCCATTTGGCACAATGGTGGTTGTT TTTGTCATTTGGGCTTTCATCTCTTTCCCTCTAGCACTTTTAGGCACAGTTGTTGGAAGAAACTTTAGCGGTGCTCCAAA TAATCCTTGTCGTGTAAAGACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCAGTGGTTTCTCTTA TGGGAGGACTGTTACCTTTTGGCAGCATATTCATTGAAATGTATTTCGTATTTACTTCCTTCTGGAATTACAAGGTGTAC TATGTGTATGGATTTATGCTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTGTGACAATTGTGGGGACTTACTT TTTGTTAAATGCTGAGAACTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCGACAGCTGTTTATGTGTATTTGT ACTCGATATACTACTACTATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATG TTTTCTCTTGGACTAGGAATTTTATGCGGTGCTGTGGGATTTCTTGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAA TATCAAGTGCGATTAA 

Protein sequence (LotjaGi4g1v0388000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSFKSRSLSSFFFLFLFFFSSAYASDSDHKYQREDPVTLWVNKVGPYNNPQETYNYYSLPFCHPSSSSSAAHKWGGLGEV LGGNELIDSQIEIKFLRNVDKTVFCQIDLSDANVKQFKDAIENNYWFEFFMDDLPLWGYVGELHPDKNSDNGKHVLYTHK NIIVKYNNDQIIHVNLTQDVPRPLEAGKRLDMTYSVKWISTNVTFGRRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGL VSMILMRTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRYLVILSAVVGTGAQLALLILLVILLAIVGMLY VGRGAIVTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASMFPFMCFGIGFVLNTIAIFYGSLAAIPFGTMVVV FVIWAFISFPLALLGTVVGRNFSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVY YVYGFMLLVFLILVIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLM FSLGLGILCGAVGFLGSNLFVRRIYRNIKCD 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP_GRAM_NEGATIVE 1 24 24 -
SignalP_GRAM_POSITIVE 1 24 24 -
SignalP_EUK 1 24 24 -
Phobius 1 24 24 -
Phobius 1 7 7 -
TMHMM 7 24 18 -
Phobius 8 19 12 -
PANTHER 10 591 582 0.0
PANTHER 10 591 582 0.0
Phobius 20 24 5 -
Phobius 25 223 199 -
Pfam 54 548 495 6.6E-169
TMHMM 224 246 23 -
Phobius 224 246 23 -
Phobius 247 289 43 -
Phobius 290 320 31 -
TMHMM 293 315 23 -
Phobius 321 325 5 -
TMHMM 325 347 23 -
Phobius 326 349 24 -
Phobius 350 360 11 -
Phobius 361 386 26 -
TMHMM 368 390 23 -
Phobius 387 397 11 -
Phobius 398 423 26 -
TMHMM 400 422 23 -
Phobius 424 443 20 -
Phobius 444 471 28 -
TMHMM 450 472 23 -
Phobius 472 482 11 -
Phobius 483 509 27 -
TMHMM 487 509 23 -
Phobius 510 520 11 -
TMHMM 516 538 23 -
Phobius 521 541 21 -
Phobius 542 552 11 -
Phobius 553 581 29 -
TMHMM 553 575 23 -
Phobius 582 591 10 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0388000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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