Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0388000 |
| Transcript ID | LotjaGi4g1v0388000.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane 9 superfamily member; TAIR: AT1G10950.1 transmembrane nine 1; Swiss-Prot: sp|Q940G0|TMN1_ARATH Transmembrane 9 superfamily member 1; TrEMBL-Plants: tr|I1K499|I1K499_SOYBN Transmembrane 9 superfamily member; Found in the gene: LotjaGi4g1v0388000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76635396..76640285) extracted from Lotus japonicus Gifu genome v1.2.
TATAACTTTGCTTCATCTATGGCTGTGGTTTCTCTACTCTCCATATCCTTAATCTGCTGTAACTTTAAATCCAACCTATC AGTAATCTCTGAGTCTTTTTTCCCGCTTTGCTATTGAAACAGATTAAATATCTATTTTTCATTTGTATTTTCAAGTGGCG ATTGGCTTCTCTTTTAAATGGATGTATTTTCTTTTCATTGCAGTATCAACGAGAAGACCCAGTTACCCTTTGGGTTAACA AAGTTGGTCCATATAACAATCCACAAGAAACATACAACTATTACAGCCTCCCATTTTGCCATCCATCTAGTAGTTCGAGT GCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAACGAACTCATTGATAGCCAAATTGAGATAAAGTTTCT AAGTATGGAGGCTTTTGTTGTACTATTTATTTCATTAAAGAACTCAATAAAATAAACTAGCTTTAATGGATGCTCCTTTT TTCAGGAAATGTGGATAAGACTGTCTTTTGCCAGATAGATCTCAGTGATGCAAATGTTAAACAATTCAAGGATGCAATTG AGAATAACTACTGGTTTGAATTCTTCATGGGTATGTTTTGCATGGTTTCTTGCACTTATTACTTTGAGAACTTGTAGAAT GATTGTAATCTCAACAAATGTTGAAAGCTCAAAGAAAATTTTCTTTGGTCATCACGTTAACACAGAGGATAACATAGCTA CAACGCAGAAATGTATAGCAGAGGTTACCATAAAACACTCACAAACTAAGAAACACATATCACTACACTTGGGGGAGAAC CCCTATTTGACTGAACAAAGGGGTTGAGGTGAATAATATTTCCATTCCACAGGACCTATCCCCTTGCTTGTTGTATTTGC TGTCCAATTCACTGTATTACTTCACAGCCTTGGAATCATATCAGGGAGATCTCATTAGAAGAGGCGAGTAGTAATTTTAG GTAATGAAAACTTCCAATCAATCCCCGAGGAGACTGAGCAAGCAATGAAGTGGCTTGAGAATCAGTTTCAAACTCACCAG AACAGTGAAGTGCTCATTTGTAAACTAAGTCCATTCCTTGATGTTATAGAATTGGATCAGAATCAATTGAAAATAAACAG TTTTTAAGATAAAGTCAGTCCCAGCTGAGTATCAGATTAATACGAGAACTAAGATTAAGATGTTAATACAGAAAGAAATC AGAAACAGATCCTTCAAGTTATCCGTATTCATTTCTCTAACCCCCACTACTAATTGACAGTTATTGTAATGAAAACTACT TGTGATTCTAATCTTCTATTACCAATTTTCCCCTTCCTACTATAATCCCTCATAGTGAGACGTGAGGTTTGGGCTTCTGG AGTAAGACAAACACTTGAATCTAGTTCTGGGTTTCGCTATTTCATTTCAACCACACCGATAGCTCAATGGTGATTGTTCA TAAGGATACCAATCTTTGTCAAAGAACAGAGAATTGAAATTTCTTGGAAGTTTGGATCACACTTGTACATAATGTCTTTG GAAATGTTGGAAGGCCTATTTTAATTCTACTAGATCAAGTTATTGACTCATTGAATGCATGTATTTATTGGTTTTTGTAC AACTTAGATGAATAGGATTTCTAAGGTTCCTTTAAAATTTGAGAGATCAACTTGATCTGTTTCTTGAGGCTGTGATGGTG GAATATTTTGTTTTTGGTTGCACCAAGGTATTCCCACAGCCGGCAACCATGAGATGAGACTAATCTCCACAATGCTCTGA GATCACATGGTGCACAAATATAAACATAAAATAAGTTGAAAGTTTATGACACATCTTGCTTGGCTTTCTCAGGTGGCTGG GTGTTAACTTAAATCACGTGCATTCTTTATCTATGTTCTTTTCACAGCCAAGACCGACACAGTTTAATAGAAGATTAGAA GTAGAAAATTATATTATGTATTCCGATTATCTGGTTGATTGGGAACAGATTCATTAGTAGTTGAGCTGCTATTTTCATCA TGTATGATTATTGACATAGAATGCTTGAAACACTGACTATATATTCTTCAGCATGGAAGCAAAGCTTTGCTGCATTTTGA TCTACTAGGCTGGGTATTTTGTGATATTTGTAGTCATCAGAACTGGAAGAAATATCAAGTTAAGAATTCTTGATGTAAAG TCATTTCTTAAACATTCTTGATCTTGAATACCTTAGTGAGTGTTAGTTTTCCATATTATAAGCACTAGAACCGAAAGAAG TATGAAATTAATAACTCTGTGTGAAGTAATTTTCTTATGCATTTTATTATGTTTTTGCCTTAATGTTGCCAATGAGAATT TGTTGCTAGCTCCTCATTATTTGTTCTTATTTAGTAATTCCTGCTTTTCCCTCTTCTTTGGGTGAATAACTTACTTGCTC TTGTTTTTTCATATTGTTTTTTATCTGCTCTGCGATGCGCTAAATACAAGTTCAGATGATCTACCTTTGTGGGGTATGGC TAGAACTGTCTCTTCCTCTTTATCTTTATTTGATATGATTTTGTATTTCATTTATTCATCATTACTGACTATGCTTTTTT CCCCCTGTTCAAGGATATGTTGGTGAACTGCATCCTGATAAAAATAGTGATAATGGCAAGCATGTCCTTTACACACACAA GAATATTATTGTTAAATACAACAACGATCAGGTCAGAAGTTATTTAAATTTCGTACTCTATCTTTTGAGGGGTTTTGAAT CCTTGAAGTTTCATATTTAGGTCTATTTCCTTGCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAGGCCTTTGGA GGCAGGGAAACGTTTGGACATGACATATTCTGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCTTTGATGTCT ACCTGGACTACCCTTTCTTTGAGCATCAGGTACAGCTTTGTTTTTAAGATTGAAATGGTGTTTACAATTAGTTAGTTCTG GCTATGTGTTCATCCATGTTGATCCTACCTTCGCCTGTCACTGAAAATTTTGCTCTTTTTTCCCTTCTAGATCCATTGGT TCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTAATGCGAACTCTGAGAAAT GACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAAACTCTGGTGATGGTTTCATGACTCATATCTGTTCTTATTTA TGGGATATGGATTTTCTCCCTAGAAAAATCGTTCTAATTTTCAAAATTTGGTCATTATTTACATGCTTACAGGAGAGAGA TGTTAGTGAAGAGTCGGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTTCAGCTG TTGTTGGCACAGGTGCACAGCTAGCATTGCTGATTCTTCTTGTTATCTTGTTGGCTATTGTTGGGATGTTGTATGTCGGG TATGCACATAACCTTCAACTGACTGTAACATTCATCTGAATGATGTATTCAATGACATTGTAGTTGTGCATAAATTTTAC TTCATGTAATAAGCGCATGACTATTGCTGCTTGCGTATCAAATATTTACAAAACTTCTAGTTTTTTTGTATGGACTTTAT GTTGTTTGTCCTTTGCTCTTTCATTCATTTTCAACTAAATTTCCTTCATTGCTTGTCTCAGGCGTGGAGCAATTGTCACA ACCTTTATTGTTTGTTATGCTCTCACATCATTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCGCGAAATGGGGGTAA GAATCTCGTTTAAGTTTGTCTGGGTGGCTTTGTCTAGGCCCCCCCTCTCTCTCAATCTTTATATAACGCTTGTTATCTGT TTGTTAGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTATGTTCCCATTCATGTGCTTTGGAATCGGCTTTGT CTTGAACACAATTGCTATATTCTATGGCTCTCTAGCAGCAATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGG CTTTCATCTCTTTCCCTCTAGCACTTTTAGGCACAGTTGTTGGAAGAAACTTTAGCGGTGCTCCAAATAATCCTTGTCGT GTAAAGACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCAGTGGTTTCTCTTATGGGAGGACTGTT ACCTTTTGGCAGCATATTCATTGAAATGTATTTCGTATTTACTTCCTTCTGGAATTACAAGGTGAATTACTGCGCTATGA CTTGTTTCAGTAATAAACTTTCTATTCTACTTATTGGTTTGGTTATGAAGGTTACTTGTTCCTTATCAGAAAGAGCTATA TCAAGGAAAATTGTCCTGATAATGGTCATTTTAATTAAATATGTTTGTATTTCAGTGGAAGCTGAGTGAATACAAGCACT GTTAGCTTATATATTTTTTCCTCCTTTGTGACAAGCAGGTGTACTATGTGTATGGATTTATGCTACTGGTTTTTCTGATC CTGGTCATTGTTACTGTTTGTGTGACAATTGTGGGGACTTACTTTTTGTTAAATGCTGAGAACTACCACTGGCAATGGAC TTCTTTCTTTTCAGCTGCCTCGACAGCTGTTTATGTGTATTTGTACTCGATATACTACTACTATGTCAAGACAAAGATGT CAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGAATTTTATGCGGTACGTGT TCTTAAGTTTTATGCTGAATGAACCCCATTTCCCTATTACCTGCATAAATGCTTTTATGCTTATTACTTGAACTGGGTTA AAGTTTTTCTTCTAACGTGCAGGTGCTGTGGGATTTCTTGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAATATCAA GTGCGATTAA
CDS sequence (LotjaGi4g1v0388000.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTGGTTTCTCTACTCTCCTGGCGATTGGCTTCTCTTTTAAATGGATGTATTTTCTTTTCATTGCAGTATCAACG AGAAGACCCAGTTACCCTTTGGGTTAACAAAGTTGGTCCATATAACAATCCACAAGAAACATACAACTATTACAGCCTCC CATTTTGCCATCCATCTAGTAGTTCGAGTGCTGCACACAAATGGGGTGGTCTTGGTGAGGTCCTGGGTGGCAACGAACTC ATTGATAGCCAAATTGAGATAAAGTTTCTAAGAAATGTGGATAAGACTGTCTTTTGCCAGATAGATCTCAGTGATGCAAA TGTTAAACAATTCAAGGATGCAATTGAGAATAACTACTGGTTTGAATTCTTCATGGATGATCTACCTTTGTGGGGATATG TTGGTGAACTGCATCCTGATAAAAATAGTGATAATGGCAAGCATGTCCTTTACACACACAAGAATATTATTGTTAAATAC AACAACGATCAGATTATTCATGTTAATCTCACTCAAGATGTCCCAAGGCCTTTGGAGGCAGGGAAACGTTTGGACATGAC ATATTCTGTCAAGTGGATTTCTACTAATGTAACTTTTGGACGTCGCTTTGATGTCTACCTGGACTACCCTTTCTTTGAGC ATCAGATCCATTGGTTCTCCATTTTTAACTCTTTCATGATGGTCATCTTCCTTACTGGATTGGTGTCAATGATATTAATG CGAACTCTGAGAAATGACTATGCAAAATATGCTCGGGAAGATGATGATTTGGAAACTCTGGAGAGAGATGTTAGTGAAGA GTCGGGCTGGAAACTTGTGCATGGTGATGTTTTTCGGCCTCCTCGCTATTTAGTTATTCTTTCAGCTGTTGTTGGCACAG GTGCACAGCTAGCATTGCTGATTCTTCTTGTTATCTTGTTGGCTATTGTTGGGATGTTGTATGTCGGGCGTGGAGCAATT GTCACAACCTTTATTGTTTGTTATGCTCTCACATCATTCATTTCTGGTTATGTGAGTGGGGGAATGTACTCGCGAAATGG GGGTAAAAGCTGGATTAAATCCATGATCCTTACAGCTTCTATGTTCCCATTCATGTGCTTTGGAATCGGCTTTGTCTTGA ACACAATTGCTATATTCTATGGCTCTCTAGCAGCAATCCCATTTGGCACAATGGTGGTTGTTTTTGTCATTTGGGCTTTC ATCTCTTTCCCTCTAGCACTTTTAGGCACAGTTGTTGGAAGAAACTTTAGCGGTGCTCCAAATAATCCTTGTCGTGTAAA GACTATTCCTCGTCCCATTCCTGAGAAGAAGTGGTACCTCACACCCTCAGTGGTTTCTCTTATGGGAGGACTGTTACCTT TTGGCAGCATATTCATTGAAATGTATTTCGTATTTACTTCCTTCTGGAATTACAAGGTGTACTATGTGTATGGATTTATG CTACTGGTTTTTCTGATCCTGGTCATTGTTACTGTTTGTGTGACAATTGTGGGGACTTACTTTTTGTTAAATGCTGAGAA CTACCACTGGCAATGGACTTCTTTCTTTTCAGCTGCCTCGACAGCTGTTTATGTGTATTTGTACTCGATATACTACTACT ATGTCAAGACAAAGATGTCAGGCTTCTTCCAAACCAGCTTCTATTTTGGATACACTTTGATGTTTTCTCTTGGACTAGGA ATTTTATGCGGTGCTGTGGGATTTCTTGGTTCAAATTTGTTTGTGAGGAGGATCTACAGAAATATCAAGTGCGATTAA
Protein sequence (LotjaGi4g1v0388000.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVVSLLSWRLASLLNGCIFFSLQYQREDPVTLWVNKVGPYNNPQETYNYYSLPFCHPSSSSSAAHKWGGLGEVLGGNEL IDSQIEIKFLRNVDKTVFCQIDLSDANVKQFKDAIENNYWFEFFMDDLPLWGYVGELHPDKNSDNGKHVLYTHKNIIVKY NNDQIIHVNLTQDVPRPLEAGKRLDMTYSVKWISTNVTFGRRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILM RTLRNDYAKYAREDDDLETLERDVSEESGWKLVHGDVFRPPRYLVILSAVVGTGAQLALLILLVILLAIVGMLYVGRGAI VTTFIVCYALTSFISGYVSGGMYSRNGGKSWIKSMILTASMFPFMCFGIGFVLNTIAIFYGSLAAIPFGTMVVVFVIWAF ISFPLALLGTVVGRNFSGAPNNPCRVKTIPRPIPEKKWYLTPSVVSLMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFM LLVFLILVIVTVCVTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTLMFSLGLG ILCGAVGFLGSNLFVRRIYRNIKCD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 1 | 1 | - | – | |
| SignalP_EUK | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 2 | 12 | 11 | - | – | |
| Phobius | 13 | 17 | 5 | - | – | |
| PANTHER | 14 | 585 | 572 | 0.0 | ||
| PANTHER | 14 | 585 | 572 | 0.0 | – | |
| Phobius | 18 | 217 | 200 | - | – | |
| Pfam | 48 | 542 | 495 | 6.4E-169 | ||
| Phobius | 218 | 240 | 23 | - | – | |
| TMHMM | 218 | 240 | 23 | - | – | |
| Phobius | 241 | 283 | 43 | - | – | |
| Phobius | 284 | 314 | 31 | - | – | |
| TMHMM | 284 | 306 | 23 | - | – | |
| TMHMM | 313 | 335 | 23 | - | – | |
| Phobius | 315 | 319 | 5 | - | – | |
| Phobius | 320 | 343 | 24 | - | – | |
| Phobius | 344 | 354 | 11 | - | – | |
| TMHMM | 350 | 372 | 23 | - | – | |
| Phobius | 355 | 380 | 26 | - | – | |
| TMHMM | 379 | 401 | 23 | - | – | |
| Phobius | 381 | 391 | 11 | - | – | |
| Phobius | 392 | 417 | 26 | - | – | |
| Phobius | 418 | 437 | 20 | - | – | |
| Phobius | 438 | 465 | 28 | - | – | |
| TMHMM | 447 | 469 | 23 | - | – | |
| Phobius | 466 | 476 | 11 | - | – | |
| Phobius | 477 | 503 | 27 | - | – | |
| TMHMM | 481 | 503 | 23 | - | – | |
| Phobius | 504 | 514 | 11 | - | – | |
| TMHMM | 513 | 535 | 23 | - | – | |
| Phobius | 515 | 535 | 21 | - | – | |
| Phobius | 536 | 546 | 11 | - | – | |
| TMHMM | 547 | 569 | 23 | - | – | |
| Phobius | 547 | 575 | 29 | - | – | |
| Phobius | 576 | 585 | 10 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi4g1v0388000.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…