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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0388400 |
| Transcript ID | LotjaGi4g1v0388400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aminomethyltransferase; TAIR: AT1G60990.1 Glycine cleavage T-protein family; Swiss-Prot: sp|Q681Y3|Y1099_ARATH Putative transferase At1g60990, chloroplastic; TrEMBL-Plants: tr|A0A151UBV7|A0A151UBV7_CAJCA Aminomethyltransferase; Found in the gene: LotjaGi4g1v0388400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76666374..76670956) extracted from Lotus japonicus Gifu genome v1.2.
AACAGTGTCATCACTAGCATCAACATGCTTGAGCCCTCGGAGCAAACCACGGTGTCTGTCTGTTTCGCCCAAACCTTGTT TTCCCCGAAACCTTCTCCATCTGATGAAGCAGAAGAAGAAGAAGCTAATCTCTTGGTCCATCTCAGCTCATGCCTCCCCT TTCGACCTTTCCCCTCCTCCCATCGACCATGACTTTCTGGATGCTGTCAAAACCGCAGGCGCAGAGGTTTCTGGTGACGG AATCGTTGAAACATTTCACACTGATGAAGAAGCGCTGGATGCTGCCGACAATGGGGTTGCTGTATGTATTCTGTTCTATT CCTTTGGATTATCAAATTGTAATTTCAGAGTTTCCACAAAATACTTTTTGTAGTAATGTGGTATTGAATTTTATATGAAA AAGTTAATACAATTTTGAAGTCTTATATAAATATAATTCAATATGAATGATTAGTTGATTACCAAATTATTAAGCTACAT TTGCTATTGTGTTAGATAATGTGCGATTTTGTTTTTTGCTTCATTTAATTTCTCTGTGGCATCTCATGGTTTAGGTTGTG GATCTTTCACACTTTGGCCGGATAAGAGGTACTTGCTTTTCTTGAACTATTGCCTCCCCACATTAGAGTAATGCATGTTC TCAGGTCTATTGGGATTATGTAGAGTTAAAACTGTTGCAAACATGTCCAAAACTGCTACTAACAAAAGAAGGGAAGAAAT ATTTGTTTTTTCCTTTTAATTTAAGTCAATAGTTTGGTGTCGTAAAACGTCTTTCATAGAATAAGAAGGTGAGCAGCTGT TTTAGAGCTAGAGCACCACATGATCATGTGTCCCGGGTGAGCCTTAGGGTCCTCCTAATTTGCTGCTGGTCATTAGTCAA TGTCTCATGAGAACTGCAGTCCAAACTGAATACTAAACCTGGAAGGGTGATTTGGATGTCAATGTGGGTTTTCTCTTTAT TTGAAGAGTGAGTCAGAAACCAAAAATAGGGTTTACATGGAAATTCACCAATGCTATTACAAGTTCACACTCTTTCATCG AAGATAGGGGGAAGATTAAATGACTATCATCAGCAAGAATCATTTCAATCTGCTGCTTGTTATCATGCATGTTTCTCTGG AATGGATATTCCTGACATTTTTGGCATTTCTAAGTGGTATATAGTTATTGTATCAGGGACTGGTGAAAACTAGAAAAGCT ACCAGAATGAAGAATCTCCCCCAAAATGTTAAATTTACATATAATTTTACAGATCTGCATTCTCTTAATCCATACCACAT GTGAAGGGAAGCATGTCACGAGGAAAAACCTCCAAAAAATAGTCAGACTTATATGTGAATTTAATACATTTGCATTGCTA TTAGTTCTTAAAGCTTAAGTTATTGGGAGAGTTGGTCCTTGACGTGATTTAATGTTTTCTTAACTTTTAATCCAAATATT TATGCTACTTGAAATGAAGTCAGTGGAGAAGATCGCATTCAGTTCCTTCACAACCAGAGCACTGCAAACTTTGAATGTCT ACAGCCAGGGCAAGTAAGTATTGGAAGAGAGTCGCGCTGTTTGACTGCATTTGTATTATTTTCAAGTTATTGTCAATTTA TTTTATATTTCATATTATAATACAGGCTTAAGTAATAGGATCTCTAACTGAAATCGCTAGGGATGTGACACTGTTTTTGT AACGCCAACAGCTCGAACAATAGATATTGCACATGCATGGGTCATGGTAATTTCTTTTCTTCATTACTCACAAAATTAAT TTGAAGCTGTCTTTCTAGTTTCTACAATGTATTACATCTTAATTTTTCATGTGCCTGACCCTGACCACTTTCTCTTGTTG CTTTGACAGAAAAATGCAATAACACTAGTGGTTTCACCAGAGACATGTGGGACCATTACTGAAATGCTGAACAAGTAAGT AACTTCTTGTATGTTGTAATGTAAAGATTCACCATGGAGGTGAAACTGCAAAAAGGATTAATAGAGAAAACAAATCGTTG TTTTTCCTGATTAATATTATCAAATGCACTTTTTATTGAAAATATTATCAAATTTAACTAAATCTTTTACATGTATGATT TTAAGGTACATATTTTTTGGTGACAAGGTAGAGATTCAAGACATCACTAAGCTAACCAGCTTATTTGTTTTGGTGGGACC CAAAAGTGGCCAAGTAAGAGATATTATTATACCTATTCAGTCTGGAGAAGAACAAAGTTGGTAATTTTCAATATAATGAA ATGAACAGGTGATGGAAAACTTAAACCTTGGTGATCTTATTGGAAAACCATATGGCGCGCATCAACATTTTAATGTAAGC TTGATCAAACTAGTTATTTTTCTGTGATGTTTGTGATCTTTATTGGCTGTCTTTCTTATCACTAGTTTATCACTGCAAGA TATAACTAGTCATGCATGTTTGGTACTATTGTCAACTGTTTGATTATGTTTGCCTTAACCTGTCTTATTTTCAACATAAA ACACCTCACATGCGCAATCATGTCATTTGTGCTTCTTTTCGGTATCATGTAGCTGTTTCTCATAGATAACTTTGATACTT TAAAAAGGCATAGATAACTCATGTATAACAAATTGCAACTTTGATTTTGGCCAACAGTTTCTATGGTTGCATCTTCTACA TGTCTTCCAAATTTCAAAATGAGTTAAATATACATTACTTCCAAAGTAGTGAAGTTTCAACTGCAATACCAAATAGAACT CTCACTCTCTTATGTTTTTCCCTTAAATTAAATAAAAAGCTTAAAGACCTACATAATCTGTGAATACTCTTGTGAAGAAA TTCTCTTAAACATATTTTTAATTTGTAGGTTGATAAGCAGCCTGTAACTATAGGGGTTGGAAACCTTCTTTCTGAAGATG GTTTTTCATTGTTGATGTCTCCAGCGGCTGCTCCCTCTGTGTGGGAAGCTATTCTTGCTCAAGGGGCTGTCCCAATGGGT TCTAATGGATGGAACAAATTACGGGTTATACGGGGTACTGAATTCTTTAGATCATGTGTATATTTCTATGTTTCTATCTT GTAGTTATCAACTCCTATTTTCTTAAGGACATGTACTGTTTTGTATGACAACCCCCCTGCCTCTTTTGCCCTCTCATTAT ATATCGTTACGCCATAACAAAATTTCCCTCCAAATCCCATGACTGCCACACCTTCAGTTTATTACATTAATCATGTCCAC ACTGTTCATGCATTGGAGCCCCTGATCCTCTACATCCCATTTAGTTCCTGGTAGCATCAACTATAGTATCAGGGGATCTC TTGGTATAGTGTCATCTATTAAATGATAAGTCATGTAAGAGATAAATATAGGTCTGCAATAAATAACTTTTACTCCTGTC TGTGTCTATATATAGTTTCATTCACTAGATTCCTATGTTCACTTTGGATCATAACTTGACTTCTCAGGAAGACCTGCTCC TGGAATGGAGCTTACAAAGGAATTCAATGTACTGGAGGCCCATCTATGGAATTCAATTTCTCTAAATAAGGGTGCGTGAC TGCTCTTTTGCCAGCATGCCACTGGCGCCCTGATAATATTAATCAGGAAAAACTCCAGACTACCGGGCAGGGCGCCACTA CCAATATGCATAAAATGTTATGACTTGCTTGATAGTTAGTCTGATTCTGACTTTCTCAGGTTGTTACAAAGGACAGGAGA CTATAGCTAGGCTCATAACATATGATGGAGTCAAACAGAGGTTATGGGGATTTCATCTTTCTGCAGCTGCAGAACCAGGC AGTATTATTACGGTTGATGGGAAAAAGGTGCTATAAGTTTTTCTTAGAGAGAGAATTACACTCTCCTCCCTCGAGAGAAG CTTGAAATACTCCCCCTCCCTTATTTTAGAAACTACAAGGGATGTGAATACAGGTTCCAAAATAAGAGGGGACGAGAGTG TAATCAAGCCTCTCTCAAGAGAGGGGGTTTTTCTTAAGTGAGAGTGGTACTATTAGATTTAATCATAAATGGTCATGATA GTAATTCCCAGTTTTGAACTAAAGTCTAAAGATGACGTACACCTGATGAAAACTCTAGTTATAGTTATAACATTGAATAT GTCTCTTTAAAGTGAACTTGTTTTTAAACTACACAAATAAGACTATATCTACCATTTAATTTTAAAACATTGTAACTTTA ACTCAAAAATCTAAGGGGGTTGGTTCCAATTTACTTTAGTGACAAAATTACTTTAGGGAAGCTTATTTACTCTACAACAT GTGTCTAGAGAAACCATCCTGCCAAAGTTATGGATAATTAATAGCAATTTGGTATGACTAAGTAACCTAGTGCTTTCGAT GTTGGGTTATACTGTCATCCTAATATTCCCTCTTGAATAGATTGGCAGAAAATCAATGGTTTTTGCAATTTGTGCAGATT GGAAAGTTGACTAGTTATACATCTGGAAGGAAGCAATCTGAGCACTTTGGATTAGGCTACATCAAGAGGCAAGCTGCTTT GGAAGGAGACACAGTAATTGTTGGAGACAACATCAGTGGAACAGTGGTGGAAGTACCTTTTCTTTATCAGCAGCGCCCAC CATCTGGAAGTTCAACTTCTTGA
CDS sequence (LotjaGi4g1v0388400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAGAAGAAGAAGAAGCTAATCTCTTGGTCCATCTCAGCTCATGCCTCCCCTTTCGACCTTTCCCCTCCTCCCAT CGACCATGACTTTCTGGATGCTGTCAAAACCGCAGGCGCAGAGGTTTCTGGTGACGGAATCGTTGAAACATTTCACACTG ATGAAGAAGCGCTGGATGCTGCCGACAATGGGGTTGCTGTTGTGGATCTTTCACACTTTGGCCGGATAAGAGTCAGTGGA GAAGATCGCATTCAGTTCCTTCACAACCAGAGCACTGCAAACTTTGAATGTCTACAGCCAGGGCAAGGATGTGACACTGT TTTTGTAACGCCAACAGCTCGAACAATAGATATTGCACATGCATGGGTCATGAAAAATGCAATAACACTAGTGGTTTCAC CAGAGACATGTGGGACCATTACTGAAATGCTGAACAAGTACATATTTTTTGGTGACAAGGTAGAGATTCAAGACATCACT AAGCTAACCAGCTTATTTGTTTTGGTGGGACCCAAAAGTGATGGTTTTTCATTGTTGATGTCTCCAGCGGCTGCTCCCTC TGTGTGGGAAGCTATTCTTGCTCAAGGGGCTGTCCCAATGGGTTCTAATGGATGGAACAAATTACGGGTTATACGGGGAA GACCTGCTCCTGGAATGGAGCTTACAAAGGAATTCAATGTACTGGAGGCCCATCTATGGAATTCAATTTCTCTAAATAAG GGTTGTTACAAAGGACAGGAGACTATAGCTAGGCTCATAACATATGATGGAGTCAAACAGAGGTTATGGGGATTTCATCT TTCTGCAGCTGCAGAACCAGGCAGTATTATTACGGTTGATGGGAAAAAGATTGGAAAGTTGACTAGTTATACATCTGGAA GGAAGCAATCTGAGCACTTTGGATTAGGCTACATCAAGAGGCAAGCTGCTTTGGAAGGAGACACAGTAATTGTTGGAGAC AACATCAGTGGAACAGTGGTGGAAGTACCTTTTCTTTATCAGCAGCGCCCACCATCTGGAAGTTCAACTTCTTGA
Protein sequence (LotjaGi4g1v0388400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQKKKKLISWSISAHASPFDLSPPPIDHDFLDAVKTAGAEVSGDGIVETFHTDEEALDAADNGVAVVDLSHFGRIRVSG EDRIQFLHNQSTANFECLQPGQGCDTVFVTPTARTIDIAHAWVMKNAITLVVSPETCGTITEMLNKYIFFGDKVEIQDIT KLTSLFVLVGPKSDGFSLLMSPAAAPSVWEAILAQGAVPMGSNGWNKLRVIRGRPAPGMELTKEFNVLEAHLWNSISLNK GCYKGQETIARLITYDGVKQRLWGFHLSAAAEPGSIITVDGKKIGKLTSYTSGRKQSEHFGLGYIKRQAALEGDTVIVGD NISGTVVEVPFLYQQRPPSGSSTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| Phobius | 1 | 7 | 7 | - | – | |
| PANTHER | 3 | 174 | 172 | 2.4E-175 | – | |
| PANTHER | 3 | 174 | 172 | 2.4E-175 | – | |
| Phobius | 8 | 13 | 6 | - | – | |
| Phobius | 14 | 17 | 4 | - | – | |
| PIRSF | 17 | 175 | 159 | 3.1E-11 | ||
| Phobius | 18 | 344 | 327 | - | – | |
| Gene3D | 39 | 173 | 135 | 7.8E-25 | ||
| SUPERFAMILY | 56 | 252 | 197 | 4.24E-47 | – | |
| Pfam | 58 | 173 | 116 | 8.6E-15 | ||
| PIRSF | 173 | 340 | 168 | 2.2E-13 | ||
| PANTHER | 174 | 342 | 169 | 2.4E-175 | – | |
| PANTHER | 174 | 342 | 169 | 2.4E-175 | – | |
| Gene3D | 174 | 332 | 159 | 8.4E-33 | ||
| TIGRFAM | 204 | 266 | 63 | 1.2E-16 | ||
| SUPERFAMILY | 266 | 332 | 67 | 1.26E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0388400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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