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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0392400 |
| Transcript ID | LotjaGi4g1v0392400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing family protein; TAIR: AT1G13040.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial; TrEMBL-Plants: tr|A0A151TKP5|A0A151TKP5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0392400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77091945..77096277) extracted from Lotus japonicus Gifu genome v1.2.
GTCTCTTCCTGCTTCTCCTATGGATTCAGGTGAAGGGGAGAGTGAAAAAAACCTAGCTCAGTTACAACATTGACGATAGC ATCATTGCAGGTGAATGAATGTGAAACTGGATCTGCTATGCATTTGGAAACCGGTGACATGTATCAGAGTGTCGGGCCAC GACACCTGCGTCTTCTGTTTTACCGTTCTCAGATATCTTACTACGTTAAAGCTGGTCTCATCGACAATGCCATCAAGGTG TTCGACGAAATGACTCAATCAAATTGCCGCCTCTTCAGCATCGACTACAACCGCTTCATCGGCGTCCTCATCCGCCACTC CCACCTCCACCTCGCCCACCACTACTACCACCGCCACGTCCTCCCCAACGGCTTCTCCCTCCTCCCCTTCACCTACTCCC GCTTCATCTCCGCCCTCTGCGCCGTCAAGGACTTCACCTCCATCGATACCCTTCTCCAACACATGGACTCCCTCGGCTTC GTCCCTGATATCTGGGCCTTCAACATCTACCTCACACTACTCTGCCGCGAGAATCGCTTGGAAACCGCCCTGCAGCTGTT TCGTACCATGCCGTTGAAAGGAAGAGAGCTTGATGTTGCGTCCTACACTATCATCATTGATGCTTTGTGCAAGTCTAAAC GGTTTCACGAGGCTACTGTGGTTTGGCGTGGTTTGATTGAGAAGGGGTTGGTTCCTGATTGTAAGGCTTGTGCTGCCATT GTTATTGGGTTGTGCGGCGGTGGCAATGTTGATTTGGCGTATGAGCTTACCGTTGGTGTGATCAAAAGTGGGGTGAAGGT TAGTAGTTTGGTTTATAATGCTTTGATTAGTGGGTTTTGTAGGATGGGGAGGAATGATAAGGCGCTGGCGATTAAGAAGT TTATGAGCATGAATGGGTGTGCGCCGGATTTGGTTACTTATAACATTTTGTTGAATTTTTGTTGTGATAAAGTTATGCTG GATGAGGCAGAGAGGTTGGTGGAGACTATGGAGAGAAGTGGGTTGGAGCCGGATTTGTATAGTTATAATCAGTTGTTAAA AGGTTACTGTAAGGATAATAAGGTGGATAGGGCTTATCGGATAATGGTGGAGAGGATGCAGACCAAAGGGGTGAGTGATG TTGTTTCTTACAACACTATTATCACGGCATTGTGTCAGGCGCGCCGGACTAGGAGGGCTTATGATTTGTTTGAGGAGATG TACAGGAAAGGGATTGAACCGGATGTGGTGACGTTCACAATCCTTATAGAAGCGTTTTTAAGAGAAGGTAGTTCCGATGT TGCCAAGAAGCTTCTTGATCAAATGGAAAGGATAGGGCTTCAGCCTGATCAAATATTCTATACGACAATAGTTGATCATT CGTGCAGGACTGGGAAGATTGATGTGGCTCATCGTGCTTTTAGGGACATGTTGAAGAGTGGAATAAATCCGGATGTGGTT TCATATAATGCCCTCATCAATGGGTTTTGCAAGGCTTCTATGGTTGCAGATGCCATGCATCTATATGATGAAATGCAGAT AAAAGGATTATTTCCTGATGAGGTAACTTTCAAGTTGATAGTTGGAGGGCTTATAAGGGAAAAGAAGCTCACATTGGCCT GCAGAGTTTGGGATCAGATGATGGAAAAAGGTTTTACGCTTGACAGCCGTCTTTCTGAGACTCTAATCAGAGCCATTCAA TCAAGTGATGGAACATAAAACATGATTCTGGCCTGTGTTGTGACTTGTGATCCTGTCAACACCACCTCACCTTTCTAAAA CGTTATTGCTAGAAACAAAATACATGAAAGGTTAGCAAACTATTTAAGTTTCTTTCTTTGTGCTGGTGGTGGCACCTGCA AAAATCAATTTTCCCATTTTCGTGCTGCTCATGGTGCAATCCCTTACCTTTGACTGTCTTTGTGCTCACACGTGGTTTTC CACTGTCTGACAGACTTCCAATTCGCTGGCCAGCCTCTGGTTAAGGATCCATACCAGTGGCAATTTTGTAATGGTTTCTT CCTGTCCATGGAAGTGATGGTGTGCATGTTTTGTTTCATATTCAAGAGACTATTCACATGGTGGATTGTATTGACTATTC CTCAATACAACCGTGAGTTTATTTACTTTTGGGCTATTGTTATACATGGAGAGCTCTGGATCTGTTTCTCACCCAGCGCA ACTCACATCATTAAATGATGATTTGGTTGAAATCAATCCTGCTGCTTATTTGATTACATCCCAGTTGGTGTTTCTTCAAA TTGAAGGTGGTTCTGAGCAAGTCCTGCTCTGTCTCCGTGCTATTTGATTACATCCTTGACTTTTGGCAGCTCAATTCAGA ATAACTTATATCCAGCCTTGCGTAGCAGCAATATTGATACTGATCATTTCATGGTTCTATTCTAGTAATAATAGTATAGC ACCCTTCCTGGAATAACAGCTCTTAATATTAGTAAATAGATGTTCTGTTTCACCAGGATGAAGTTTTTGGTATTTACTAT GCCTGTGATGTATTGCAGAGCATAAGTTTGAACTGTGGACATACACATTCTTTGGTGATATCACCTTGGTTTTGTTGAAC AATAAGCTCGGATTTCCACCACAAGCATTCTGGAACCTTTAGCAGGAGATTGGGAGTTTACTATATGTGTATATGGCTAG ATTTGTATACTCAACAGAGAATTTTGGAAAAGATTAAGATCCACTAGGTAGCCTAGTTAGGTTTCAAAATTCAAATTTAT TAGTTCCTTAAAACCTGTGATTGGGGCCCCAAATGTCTGGCTTCTGATGTTCACAGATTTTAGCCTCATAGAAACATGTT GTTGAATTACACTATTAAAAATTTCAACTTGTATTGACCTATATTAGCATTATTGTCTCTGTATCTGCAGCATTAAATTT CAAGCTTCTCTAAGGACCACCCAATCCTTTGTCCAAGTATGTTTCTACTCTCTACTAATTTAAGCACATTCTTTTACTAG AAATGATCTTCAATATATAATATTCTTGCTTATTTCGATAATCCTCTACATAGAATCGAGCTCAGCAATTGCTAAATATA AAACTAGGATTTCGTTCCAATTTTCAAATAGAAGATTTAATTGAGCATTGAGGAATAAAGAAATTTAAGCCAAAATATCA TATCAAAGTAGATTGATTTTTTTATTCTTCCCGAAATGCATATTTCATTGGAATCTTGCATAATGGTGAAGGGAAGCCTT GCACAACGGTAAAAAGTTGTTGCCATGTGATTGAGATCACGGGTTCAAGTCCTGAAAACAGCCTCTTGTTTAAAAACAGG GTAAGGCTGCATACATTGGACTAAGTGGTCGGACACTTTCCCGGACCCCGCGCATAGCAGGAGCTTTCGTGCACCGGGCC ACACAATTAGTTTTTGACATTATGTACAAGTGGGGTAGAGATCAATAATCTACTAATATTCTATCTAATTAAAAAACTTC GACTTCTATACTAAATAACTCTGGCTGTAAGTTTTTTTATACAATCTTGCATAGTTCTGTTTCTTTCAGAAGTCAAAACT AGTCTCCTCTCCTTATTGTTACAGAAAATAAGGATACTTCAATTGAATTGTATTCTTCCTTCTATTTGTTTTAAATTGAT TGTTCACTTGTTTTCTCCAAGGTATTCAAATTGATCAATATAATGTTGTGATTCTATTTTAGATTCTCTGGGTACCAATT CTGGTTTGTTGTCTGAATTCTACCAAGGATTCAAGTCCAGAATTCCAATTCTTGGATCTTAACATTGAACATGAAGGTAC TTAGAAGAAATATTTTTACGTTTTATCATCTATGCTTAAAAGAAAACTCATTTACTGATGTGATTTCCTTGGTTATCCTA TCACAGTTCACTATTAGCATGGAGGAGCAAGCACTCATTTACTGAATGCTTGGGTAAACTTTCAGGTTTCTGGATTCAGA TCATTACTTTCTGACAGCTGTTTCAGGTTGGGGTGGAGGGTATGAGGGAAGTAAGCGTTAAAAAGAGAGGACATGGAGAA TCACTATATCAGAACCGTTGTCTCACCTGCATTTGGTGCTCGTTAAACATGACCAGATCTTGGACTTGCAGAATGCAGTA AATAGAAGACAACTAAAGAAGAACTTGGCTTTAGCTTCTCTATTTGCCTTACTTAGTGGATAAGGCTTTTATTATTGCTG TTGTTGAAAATAACGTTTTTTTTGAATATGAATGAATGTTCATTCATAACTCGACGGGTTCTTCTGTCCTATCTGGTGTT TTAAACTTTTGAAGGTGCTCGAACTTGCAATTCATAGGTTTGTGGTCCACATACTTTAGACCAAAGCAAGGGGAAGGTAT CTTGTGCTGTTAG
CDS sequence (LotjaGi4g1v0392400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATTTGGAAACCGGTGACATGTATCAGAGTGTCGGGCCACGACACCTGCGTCTTCTGTTTTACCGTTCTCAGATATC TTACTACGTTAAAGCTGGTCTCATCGACAATGCCATCAAGGTGTTCGACGAAATGACTCAATCAAATTGCCGCCTCTTCA GCATCGACTACAACCGCTTCATCGGCGTCCTCATCCGCCACTCCCACCTCCACCTCGCCCACCACTACTACCACCGCCAC GTCCTCCCCAACGGCTTCTCCCTCCTCCCCTTCACCTACTCCCGCTTCATCTCCGCCCTCTGCGCCGTCAAGGACTTCAC CTCCATCGATACCCTTCTCCAACACATGGACTCCCTCGGCTTCGTCCCTGATATCTGGGCCTTCAACATCTACCTCACAC TACTCTGCCGCGAGAATCGCTTGGAAACCGCCCTGCAGCTGTTTCGTACCATGCCGTTGAAAGGAAGAGAGCTTGATGTT GCGTCCTACACTATCATCATTGATGCTTTGTGCAAGTCTAAACGGTTTCACGAGGCTACTGTGGTTTGGCGTGGTTTGAT TGAGAAGGGGTTGGTTCCTGATTGTAAGGCTTGTGCTGCCATTGTTATTGGGTTGTGCGGCGGTGGCAATGTTGATTTGG CGTATGAGCTTACCGTTGGTGTGATCAAAAGTGGGGTGAAGGTTAGTAGTTTGGTTTATAATGCTTTGATTAGTGGGTTT TGTAGGATGGGGAGGAATGATAAGGCGCTGGCGATTAAGAAGTTTATGAGCATGAATGGGTGTGCGCCGGATTTGGTTAC TTATAACATTTTGTTGAATTTTTGTTGTGATAAAGTTATGCTGGATGAGGCAGAGAGGTTGGTGGAGACTATGGAGAGAA GTGGGTTGGAGCCGGATTTGTATAGTTATAATCAGTTGTTAAAAGGTTACTGTAAGGATAATAAGGTGGATAGGGCTTAT CGGATAATGGTGGAGAGGATGCAGACCAAAGGGGTGAGTGATGTTGTTTCTTACAACACTATTATCACGGCATTGTGTCA GGCGCGCCGGACTAGGAGGGCTTATGATTTGTTTGAGGAGATGTACAGGAAAGGGATTGAACCGGATGTGGTGACGTTCA CAATCCTTATAGAAGCGTTTTTAAGAGAAGGTAGTTCCGATGTTGCCAAGAAGCTTCTTGATCAAATGGAAAGGATAGGG CTTCAGCCTGATCAAATATTCTATACGACAATAGTTGATCATTCGTGCAGGACTGGGAAGATTGATGTGGCTCATCGTGC TTTTAGGGACATGTTGAAGAGTGGAATAAATCCGGATGTGGTTTCATATAATGCCCTCATCAATGGGTTTTGCAAGGCTT CTATGGTTGCAGATGCCATGCATCTATATGATGAAATGCAGATAAAAGGATTATTTCCTGATGAGGTAACTTTCAAGTTG ATAGTTGGAGGGCTTATAAGGGAAAAGAAGCTCACATTGGCCTGCAGAGTTTGGGATCAGATGATGGAAAAAGGTTTTAC GCTTGACAGCCGTCTTTCTGAGACTCTAATCAGAGCCATTCAATCAAGTGATGGAACATAA
Protein sequence (LotjaGi4g1v0392400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHLETGDMYQSVGPRHLRLLFYRSQISYYVKAGLIDNAIKVFDEMTQSNCRLFSIDYNRFIGVLIRHSHLHLAHHYYHRH VLPNGFSLLPFTYSRFISALCAVKDFTSIDTLLQHMDSLGFVPDIWAFNIYLTLLCRENRLETALQLFRTMPLKGRELDV ASYTIIIDALCKSKRFHEATVVWRGLIEKGLVPDCKACAAIVIGLCGGGNVDLAYELTVGVIKSGVKVSSLVYNALISGF CRMGRNDKALAIKKFMSMNGCAPDLVTYNILLNFCCDKVMLDEAERLVETMERSGLEPDLYSYNQLLKGYCKDNKVDRAY RIMVERMQTKGVSDVVSYNTIITALCQARRTRRAYDLFEEMYRKGIEPDVVTFTILIEAFLREGSSDVAKKLLDQMERIG LQPDQIFYTTIVDHSCRTGKIDVAHRAFRDMLKSGINPDVVSYNALINGFCKASMVADAMHLYDEMQIKGLFPDEVTFKL IVGGLIREKKLTLACRVWDQMMEKGFTLDSRLSETLIRAIQSSDGT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 18 | 52 | 35 | 8.977 | ||
| PANTHER | 26 | 216 | 191 | 3.0E-128 | – | |
| Pfam | 26 | 50 | 25 | 0.0018 | ||
| PANTHER | 26 | 216 | 191 | 3.0E-128 | – | |
| TIGRFAM | 26 | 51 | 26 | 8.2E-4 | ||
| Gene3D | 76 | 220 | 145 | 2.2E-27 | ||
| ProSiteProfiles | 89 | 123 | 35 | 8.155 | ||
| TIGRFAM | 91 | 125 | 35 | 5.8E-4 | ||
| PANTHER | 119 | 257 | 139 | 3.0E-128 | – | |
| PANTHER | 119 | 257 | 139 | 3.0E-128 | – | |
| Pfam | 123 | 172 | 50 | 2.3E-12 | ||
| ProSiteProfiles | 124 | 158 | 35 | 9.471 | ||
| TIGRFAM | 127 | 159 | 33 | 0.0032 | ||
| ProSiteProfiles | 159 | 193 | 35 | 11.597 | ||
| TIGRFAM | 162 | 195 | 34 | 5.0E-8 | ||
| ProSiteProfiles | 194 | 228 | 35 | 6.939 | ||
| PANTHER | 208 | 329 | 122 | 3.0E-128 | – | |
| PANTHER | 208 | 329 | 122 | 3.0E-128 | – | |
| Gene3D | 221 | 323 | 103 | 1.7E-28 | ||
| Pfam | 225 | 256 | 32 | 7.9E-7 | ||
| ProSiteProfiles | 229 | 263 | 35 | 11.498 | ||
| TIGRFAM | 232 | 264 | 33 | 1.6E-6 | ||
| PANTHER | 261 | 384 | 124 | 3.0E-128 | – | |
| PANTHER | 261 | 384 | 124 | 3.0E-128 | – | |
| Pfam | 263 | 312 | 50 | 6.9E-15 | ||
| ProSiteProfiles | 264 | 298 | 35 | 12.474 | ||
| TIGRFAM | 266 | 299 | 34 | 2.0E-6 | ||
| ProSiteProfiles | 299 | 330 | 32 | 10.084 | ||
| TIGRFAM | 301 | 332 | 32 | 2.1E-5 | ||
| Gene3D | 324 | 419 | 96 | 1.1E-27 | ||
| ProSiteProfiles | 334 | 368 | 35 | 13.767 | ||
| Pfam | 334 | 381 | 48 | 3.3E-18 | ||
| PANTHER | 335 | 463 | 129 | 3.0E-128 | – | |
| PANTHER | 335 | 463 | 129 | 3.0E-128 | – | |
| TIGRFAM | 336 | 370 | 35 | 9.7E-11 | ||
| PANTHER | 365 | 520 | 156 | 3.0E-128 | – | |
| PANTHER | 365 | 520 | 156 | 3.0E-128 | – | |
| ProSiteProfiles | 369 | 403 | 35 | 11.827 | ||
| TIGRFAM | 371 | 404 | 34 | 3.5E-5 | ||
| Pfam | 400 | 431 | 32 | 1.1E-5 | ||
| ProSiteProfiles | 404 | 438 | 35 | 10.983 | ||
| TIGRFAM | 408 | 440 | 33 | 4.9E-6 | ||
| Gene3D | 420 | 525 | 106 | 1.3E-25 | ||
| Pfam | 438 | 485 | 48 | 1.9E-15 | ||
| ProSiteProfiles | 439 | 473 | 35 | 13.351 | ||
| TIGRFAM | 441 | 475 | 35 | 2.7E-10 | ||
| ProSiteProfiles | 474 | 508 | 35 | 9.821 | ||
| TIGRFAM | 476 | 509 | 34 | 6.5E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0392400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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