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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395900 |
| Transcript ID | LotjaGi4g1v0395900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Haloacid dehalogenase-like hydrolase; TAIR: AT4G39970.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; Swiss-Prot: sp|Q680K2|GPPL1_ARATH Haloacid dehalogenase-like hydrolase domain-containing protein At4g39970; TrEMBL-Plants: tr|I1KSZ7|I1KSZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0395900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77392792..77396407) extracted from Lotus japonicus Gifu genome v1.2.
TTTAATATTTTCTCTATTTAGTACGAGAATTTGTAAAAAGATAAATCATTACTTGTAAAAAAAAATAAAACACGTTTAGC GGTTCAACCTCCCTAAACGTGTGTGTTTAAGAACACATATTTTGTTGGTGCAAACTCCAATAAACGAGTCTTATATTTTT TTACATTTTATGTTTAATGGTTGTCAAAAACCTCCGCTAAACATGTTATCGATTGAATGTCATGAATTCTTAGCTACAGT ATAAACATGTTTATCACCTTGTTGTGCCATTTAAATTATTATGATTTTCATTTTATTTTCTATATAAAGTACAACTATTA CTTACATATAATAATTATGAAAGCCTTTATCAGAAATAATTCATAAAATTAAACACTACATAGGACAAAGAAAATGAAGT ACTGAGGGAGAGGGCAATGAGAATGCATAGCCACACAAAATACAGAGTGATCACTAAAGTGATGAACATGGTGTCATGGT GAATGGTTAAGGGTGGTGATAGACATGGCCTCTACTCTCACTCTTTCTCTGAGTCTCTCCACCACCACCACTTCCTCCTC CTTTCTCCCCCACACCACCATTACCAAAAACGGGTTTCGATATCCAAGAATTAAGCTCTTCTCCTCCAAGCACCGTGTCT TCTCTGTCTCAGCTTCATCTTCTTCACCTTCGCTTCAAGCACTCATATTTGACTGCGATGGTGTCATCCTAGAGTCCGAG CACTTGCATCGCCAAGCCTACAACGACGCGTTTGTTCACTTCAATGTTCGCTGCAACTCTTCTTCTCCTGAACCACTCAA CTGGGACATCGAGTTCTACGATGTACTCCAGAACACCATCGGTGGAGGCAAACCCAAAATGCGATGGTTCTCTCTTTTCC CTCCCAACTTGAATAAGTTTCTGTTTTTGTATATAACTTTTTGTTGGGTGTTTGATTATTATGTTTTGTGTGATGTGATG CTATGTGTGATTGTTTTGTTCTGTTTTGAGGATTTGAAGGTATTTTAAGGAGCATGGTTGGCCATCATCCACATTATTCG AGACGCCTCCAAGTAATGATGAGGATCAAGCTAAATTGATTGACACTCTTCAGGTATTATATGTTTCCTTTCTTTCTCTT GGCTGTGTTTGGCTTAATCACCATTAGCTTCACTTAAGAGTTAGTGTATGTTTGAATTTTCGTTGAACTTAAACATCGAT CCAGGTTTGAGAATGTGTCAAACTCAAGTCATTGTCACTTGTTATCTTACTTAGAATATATGTCATTGCATTTCCCTTAT CTTGGTAATGTAGGGTTGGAAGACTGAGAGATACAAAGATATAATCAAGTCTGGAACTGTAAGTCGATTTCTATATATTT CCCATTATAATATTTCACATTCCTAAACTGCGAAGTTGGCATCTATCTTGTTGATCAGTTAATGTTAAATACTTGTCCGT TTTGGCGCAGGTAAAACCTAGGCCCGGAGTTTTGAGATTGATGGATGAGGCCAAAGATGCTGTAAGATAATGTTGTATGC TTGTTATCTATTTCTAGCATTGTAGTTATCTCTTGTTTCTGTTTTGTTACATGAAGAGTAACTTGTATTGTTTAGATGTC TACTATATGAGTTGTTTTGATTCTTGTACCAACTGATCACCATGTTGGTTAGCTATATCTGCTTATAAGCGTGTCACTGT TTTTTGCCTGACTGTTGTTTCAGGGGAAAAAGTTAGCTGTTTGCTCTGCAGCAACTAAAAGTTCAGTTATTCTGTGTCTT GAAAACCTTATAGGAATTGTAAGCCATTTTCTTATATATCCTCAGTAATGGAAATGTAAAGTCATTTATTAATTTGCATT GAACCAACTGGTTTTCTATATTGTAGGAGCGCTTTCAAAGCCTTGATTGCTTTCTTGCTGGTATATTTGCAGAACTTTAA TCTTTTTATTGGTCATATAACATCGAGACATGTTTAATTTTGTTCAATTTTTTTATCTACCAATGCTTTGTGTACTCTAG TTGAAATTTATCTATCCATTTTATTTGAACTTTCAGGTGACGATGTGAAGGAAAAGAAGCCTGACCCATCAATATATTTG ACAGCTTCCAAGGTTTTAGCATGACAATACGATTGAGAACTTGGAAATGTAAAATTCTGAGGTTTCTTTTACACACCAAC AGACTAAGCATAATTTACATGATGTGCCTTGCAGAAGCTGGGTGTATCAGAGAAAGACTGCTTGGTGATAGAGGATAGTG TTATTGGGTTACAGGTAGAACCTCTTGTGCCTAAGATTTAAACAATCTCTTTACATGTATATAAAATGAAAAGAAAACAA AACTAACTGCATGAGCTTGGGTAAGATTGTTAGGGGCCAAGGAATTATCTTGATTTGTTATTTGATATAACAGGGTCGGT AGTTGGCTTAGTGCTGTGCTTGGTTCCATGTTTGAGAGCCTTATAATAAATTCTCATTGACCAGAATCACTACTATAATA TAGAGAGTTGATTTAAGCCCCAAAATCGATTCTGCGAGAAGCTAGGGGTGGTAGCTTTTGCGGTGAAAATAATGAACAGT GGGAGTTCATTACTGCATTTCACAATATTACTCTATAGAAATCACTTTTTCCCTCACACGTATTCAACTATAATAACTTC ACTTTCAACTCACTTTTACTAAAATAGATTTCACCAAAATCAATTTTGACAATGCTGATCCAGACCCGCACTTAACCATA TGGAATTTCAAATTAAGATCTTCTATATGCTTCCTCATTTCACTGAATTGCATTTGTTCATATTGTTTAACTAACAAAGC TGCTCTAACTATCATCTACTCTAAATGAACCTCTACAGGCAGCTACACAGGCAGGGATGTCATGTGTGGTTACCTACACA TCTTCCACAGCTGAACAGGTTAGGGTCCTCCAAATGTAGTTAACAAGAAAATATTGACCATTTTGATATTGAACTTGGAG AGGCATTACTATCCATCATGATGACAGTACCTGGATTCAATTTTGTATCTAATGTAGGATTTCAAAGAAGCCATAGCAAT CTACCCTGACCTGAGTAATTTGAGGTATAATGCATTGCTGAAAACTGAAGGTATCAGGTTTTCTTAATCTGAACTCAGGT TACTCTTTTACTAAAATGGTGTGCACCATCATGCAGATTGAATGATTTGGAATTGCTACTTAAAGATGTGGTAACTGCTA AATAGGGGAATTGCTTGTGGTTTTGGCAGCACTGCAATGGTTTCTGTCAGGAGGATGGATTGAATATTTGATGTTAACCA CAGGGTTAAGATCTTGTGTTTTTTTACTTGTTTTTCCTTATATTTATTGATGGCTGATGTATACATGTAAGATAAATATG TAAACAGTTCATTGCAAAATGTAATTAAGATCATTGTCCATTGTTTTTTTGTCATATTGAGTCCCTGCATAGATGGTTCA TAAGGATCAGTGCAAGTAATTTGCAATATTTTTATCATTTTTTTAATGAAGCATGTCAATTCATTTTATGTATTTAAACT AAGGAATAATGGACCATTGGATTAAATTGTTTGATCGTAAAGACATGGTAATTAAGTTTTTTTTCTAACTCAACAAAAAC CTTATATTAAATCAAA
CDS sequence (LotjaGi4g1v0395900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTACTCTCACTCTTTCTCTGAGTCTCTCCACCACCACCACTTCCTCCTCCTTTCTCCCCCACACCACCATTAC CAAAAACGGGTTTCGATATCCAAGAATTAAGCTCTTCTCCTCCAAGCACCGTGTCTTCTCTGTCTCAGCTTCATCTTCTT CACCTTCGCTTCAAGCACTCATATTTGACTGCGATGGTGTCATCCTAGAGTCCGAGCACTTGCATCGCCAAGCCTACAAC GACGCGTTTGTTCACTTCAATGTTCGCTGCAACTCTTCTTCTCCTGAACCACTCAACTGGGACATCGAGTTCTACGATGT ACTCCAGAACACCATCGGTGGAGGCAAACCCAAAATGCGATGGTATTTTAAGGAGCATGGTTGGCCATCATCCACATTAT TCGAGACGCCTCCAAGTAATGATGAGGATCAAGCTAAATTGATTGACACTCTTCAGGGTTGGAAGACTGAGAGATACAAA GATATAATCAAGTCTGGAACTGTAAAACCTAGGCCCGGAGTTTTGAGATTGATGGATGAGGCCAAAGATGCTGGGAAAAA GTTAGCTGTTTGCTCTGCAGCAACTAAAAGTTCAGTTATTCTGTGTCTTGAAAACCTTATAGGAATTGAGCGCTTTCAAA GCCTTGATTGCTTTCTTGCTGGTGACGATGTGAAGGAAAAGAAGCCTGACCCATCAATATATTTGACAGCTTCCAAGAAG CTGGGTGTATCAGAGAAAGACTGCTTGGTGATAGAGGATAGTGTTATTGGGTTACAGGCAGCTACACAGGCAGGGATGTC ATGTGTGGTTACCTACACATCTTCCACAGCTGAACAGGATTTCAAAGAAGCCATAGCAATCTACCCTGACCTGAGTAATT TGAGATTGAATGATTTGGAATTGCTACTTAAAGATGTGGTAACTGCTAAATAG
Protein sequence (LotjaGi4g1v0395900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASTLTLSLSLSTTTTSSSFLPHTTITKNGFRYPRIKLFSSKHRVFSVSASSSSPSLQALIFDCDGVILESEHLHRQAYN DAFVHFNVRCNSSSPEPLNWDIEFYDVLQNTIGGGKPKMRWYFKEHGWPSSTLFETPPSNDEDQAKLIDTLQGWKTERYK DIIKSGTVKPRPGVLRLMDEAKDAGKKLAVCSAATKSSVILCLENLIGIERFQSLDCFLAGDDVKEKKPDPSIYLTASKK LGVSEKDCLVIEDSVIGLQAATQAGMSCVVTYTSSTAEQDFKEAIAIYPDLSNLRLNDLELLLKDVVTAK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| PANTHER | 12 | 308 | 297 | 1.4E-164 | – | |
| PANTHER | 12 | 308 | 297 | 1.4E-164 | – | |
| Phobius | 14 | 18 | 5 | - | – | |
| Phobius | 19 | 310 | 292 | - | – | |
| SUPERFAMILY | 48 | 294 | 247 | 2.95E-39 | ||
| SFLD | 56 | 295 | 240 | 0.0 | – | |
| SFLD | 56 | 295 | 240 | 0.0 | – | |
| Gene3D | 59 | 288 | 230 | 4.3E-81 | ||
| CDD | 59 | 273 | 215 | 2.20861E-97 | – | |
| Pfam | 60 | 270 | 211 | 5.9E-23 | ||
| Gene3D | 71 | 168 | 98 | 4.3E-81 | ||
| TIGRFAM | 154 | 270 | 117 | 9.8E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0395900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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