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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0401900 |
| Transcript ID | LotjaGi4g1v0401900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT4G39620.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SV96|PP358_ARATH Pentatricopeptide repeat-containing protein At4g39620, chloroplastic; TrEMBL-Plants: tr|A0A151U5W5|A0A151U5W5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0401900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77918889..77921037) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCTACTCTTTCTTGCTCCTCTTCTTCTTCTTCTTCGTATTCATTTGCAAGGTGCGGTAGCAACGCTCCACGCTCGGC CCCACCGACCCGAATTTCGTTCGGGTCGATTCCGACCCGTCCGAAGAGGAAGAAGACGAACGATGATGACTCGGAAACCA GAGAGCTGGTTCGTTTGCTCACGAGGAAGATAAGCGACAAAGAGCCTCTTGAGAGGACGCTGAACAAGTACGTGAGGCTT GTCAGAACCGAGCATTGCTTCTTGCTCTTTGAAGAACTCGGCAAGCATGATAAGTGGCTTCCATGCCTTGAGGTCAGTGA ACTCTCTATAATATGTAACTTCCCCAATTTTGTTAATTTCATTGAATTTCTTATGTTTTAGGAAAATGGGTGTCTGGAAA GAGTAATTTTTTTTTATCAATTTTGTTGTTTTGATTTAATTGTGTTTTTAGTAGGTTGTGATAGGCTTGTTTGATTCACT TTAGGCTGTGTTTGGATACCCATTAAAACTCTTCTTATGGATTGAGATGGAAGCATGTTTAACTTGCACCAACTAATAGA GACTTGGTGCATGTTTGGATACAATGTGGAAAATCATGGTGAACAAGAGTAACTTCCCTTAGCTTTTGTGGCCGTCTACA GTGATATTAGTTTCATCTACGGTGATATTAGTTTCACCGTGATTTTCCACAATGCACCAACCCACAGATACTTAGTGCAT GAAAAGAAGCAACTTTTTTGTGGTTGTCTACAGTGATTTTGACTTCACGGTGATTTTCCACCATGTATTTAGACATGCAC TTAATAGTTGTTGTTGTCGTACTTTTTGTTACATTTACTGATATTATTGTATGAATCTTAGTACTCCCATAATTTCTTAC TCAACAAGTTCCTTTTTTTAAAAAAAAAATAGTATCAAATTATGTTAGATCTTAGAAGTTAGCATGCATTCAGATAAGGG AGCATGAAGGATAATGTCAATGGTTAAATTTGAGTCACTTATGAGTAATGATATTTGGCATTCAGGTATTCAGATGGATG CAGAAACAACGGTGGTATATGGCTGATAATGGGGTTTACTCAAAACTCATATCAGTTATGGGGAAGAAAGGACAAACCAG GCTGGCTATGTGGCTTTTTTCGGAGATGCGTAACACTGGCTGTCGCCCGGATACTTCTGTTTACAATTCACTCATCTCAG CCCACCTTCATTCTCGGGACAAAACTAAGGCTTTGGCCAAAGCTCTTGGTTACTTTGAGAAGATGAAAGGAATGGAGCGG TGTAAGCCCAACATTGTCACATACAATATTATTTTGAGAGCTTTTGCTCAAGCTGGGAAGGTGGAGCAGGTGAACTCTCT GTTTAAAGATCTTGATGAGAGCATCGTTTCGCCGGATATTTACACCTATAATGGTGTGATGGACGCATATGGGAAAAGAG GGATGATCCGCGAAATGGAAGCGATGCTTACTCGGATGAAGAGCAATCAGTGTAAGCCTGACTTGATTACCTTTAACTTG CTGATTGATTCATATGGGAAGAAGCAGCAATTTGATAAGATGGAGCAAGTGTTTAAGAGTTTACTGCGCTCCAAGGAGAA ACCGTCACTGCCTACATTTAATTCAATGGTTTTGAACTATGGGAAGGCGCGGCTTAAGGATAAAGCAGAAAATGTCTTCA AACAGATGACTGAAATGGGTTACGCGCCGAGCTTTGTCACACATGAGAGTCTCATCTATATGTATGGCTTCTGCGATTGT GTCTCCAAGGCGAAAGAATTGTTTGATGGGCTGGTTGAATCGAAGGTTCAGATCAAAGTTTCAACCCTAAATGCTATGCT TGATGTTTACTGCATAAATAATTTACCACAGGAAGCAGATTCCCTGTTTCAGAGAGCAAGAAGTATAAAAGTTTTGCCAG ATGCATCAACATATAAACTTCTTTATAAGGCATACACTAAGGCCAACTCTAAGGAACTTCTAGATAAATTGCTGAAGCAT ATGGATAAAGATGGTATCATTCCTAATAAGAGGTTCTTCTTGGATGCTTTGGGTGCTATTGGATCTTCACCAGCAAATTC ACGATCTGCTAATTCTGCAACTCATTCAAAAAGCCCCAATTTTTTTGGGAAACTCAGCTAGAAACATAG
CDS sequence (LotjaGi4g1v0401900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTACTCTTTCTTGCTCCTCTTCTTCTTCTTCTTCGTATTCATTTGCAAGGTGCGGTAGCAACGCTCCACGCTCGGC CCCACCGACCCGAATTTCGTTCGGGTCGATTCCGACCCGTCCGAAGAGGAAGAAGACGAACGATGATGACTCGGAAACCA GAGAGCTGGTTCGTTTGCTCACGAGGAAGATAAGCGACAAAGAGCCTCTTGAGAGGACGCTGAACAAGTACGTGAGGCTT GTCAGAACCGAGCATTGCTTCTTGCTCTTTGAAGAACTCGGCAAGCATGATAAGTGGCTTCCATGCCTTGAGGTATTCAG ATGGATGCAGAAACAACGGTGGTATATGGCTGATAATGGGGTTTACTCAAAACTCATATCAGTTATGGGGAAGAAAGGAC AAACCAGGCTGGCTATGTGGCTTTTTTCGGAGATGCGTAACACTGGCTGTCGCCCGGATACTTCTGTTTACAATTCACTC ATCTCAGCCCACCTTCATTCTCGGGACAAAACTAAGGCTTTGGCCAAAGCTCTTGGTTACTTTGAGAAGATGAAAGGAAT GGAGCGGTGTAAGCCCAACATTGTCACATACAATATTATTTTGAGAGCTTTTGCTCAAGCTGGGAAGGTGGAGCAGGTGA ACTCTCTGTTTAAAGATCTTGATGAGAGCATCGTTTCGCCGGATATTTACACCTATAATGGTGTGATGGACGCATATGGG AAAAGAGGGATGATCCGCGAAATGGAAGCGATGCTTACTCGGATGAAGAGCAATCAGTGTAAGCCTGACTTGATTACCTT TAACTTGCTGATTGATTCATATGGGAAGAAGCAGCAATTTGATAAGATGGAGCAAGTGTTTAAGAGTTTACTGCGCTCCA AGGAGAAACCGTCACTGCCTACATTTAATTCAATGGTTTTGAACTATGGGAAGGCGCGGCTTAAGGATAAAGCAGAAAAT GTCTTCAAACAGATGACTGAAATGGGTTACGCGCCGAGCTTTGTCACACATGAGAGTCTCATCTATATGTATGGCTTCTG CGATTGTGTCTCCAAGGCGAAAGAATTGTTTGATGGGCTGGTTGAATCGAAGGTTCAGATCAAAGTTTCAACCCTAAATG CTATGCTTGATGTTTACTGCATAAATAATTTACCACAGGAAGCAGATTCCCTGTTTCAGAGAGCAAGAAGTATAAAAGTT TTGCCAGATGCATCAACATATAAACTTCTTTATAAGGCATACACTAAGGCCAACTCTAAGGAACTTCTAGATAAATTGCT GAAGCATATGGATAAAGATGGTATCATTCCTAATAAGAGGTTCTTCTTGGATGCTTTGGGTGCTATTGGATCTTCACCAG CAAATTCACGATCTGCTAATTCTGCAACTCATTCAAAAAGCCCCAATTTTTTTGGGAAACTCAGCTAG
Protein sequence (LotjaGi4g1v0401900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTLSCSSSSSSSYSFARCGSNAPRSAPPTRISFGSIPTRPKRKKTNDDDSETRELVRLLTRKISDKEPLERTLNKYVRL VRTEHCFLLFEELGKHDKWLPCLEVFRWMQKQRWYMADNGVYSKLISVMGKKGQTRLAMWLFSEMRNTGCRPDTSVYNSL ISAHLHSRDKTKALAKALGYFEKMKGMERCKPNIVTYNIILRAFAQAGKVEQVNSLFKDLDESIVSPDIYTYNGVMDAYG KRGMIREMEAMLTRMKSNQCKPDLITFNLLIDSYGKKQQFDKMEQVFKSLLRSKEKPSLPTFNSMVLNYGKARLKDKAEN VFKQMTEMGYAPSFVTHESLIYMYGFCDCVSKAKELFDGLVESKVQIKVSTLNAMLDVYCINNLPQEADSLFQRARSIKV LPDASTYKLLYKAYTKANSKELLDKLLKHMDKDGIIPNKRFFLDALGAIGSSPANSRSANSATHSKSPNFFGKLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 52 | 52 | - | – | |
| MobiDBLite | 1 | 33 | 33 | - | – | |
| PANTHER | 41 | 323 | 283 | 1.3E-64 | – | |
| PANTHER | 41 | 323 | 283 | 1.3E-64 | – | |
| SUPERFAMILY | 46 | 434 | 389 | 4.17E-5 | ||
| Gene3D | 50 | 172 | 123 | 3.2E-23 | ||
| ProSiteProfiles | 118 | 152 | 35 | 11.016 | ||
| Pfam | 121 | 163 | 43 | 7.3E-8 | ||
| TIGRFAM | 121 | 154 | 34 | 5.7E-5 | ||
| ProSiteProfiles | 153 | 187 | 35 | 6.149 | ||
| Gene3D | 173 | 333 | 161 | 9.0E-40 | ||
| Pfam | 192 | 240 | 49 | 5.1E-12 | ||
| ProSiteProfiles | 193 | 227 | 35 | 10.72 | ||
| TIGRFAM | 195 | 228 | 34 | 6.1E-6 | ||
| ProSiteProfiles | 228 | 262 | 35 | 11.751 | ||
| TIGRFAM | 230 | 263 | 34 | 7.9E-9 | ||
| PANTHER | 233 | 382 | 150 | 1.3E-64 | – | |
| PANTHER | 233 | 382 | 150 | 1.3E-64 | – | |
| ProSiteProfiles | 263 | 297 | 35 | 10.698 | ||
| TIGRFAM | 265 | 298 | 34 | 8.6E-7 | ||
| Pfam | 265 | 293 | 29 | 8.8E-4 | ||
| ProSiteProfiles | 298 | 332 | 35 | 10.72 | ||
| Pfam | 301 | 329 | 29 | 4.2E-4 | ||
| TIGRFAM | 301 | 333 | 33 | 8.2E-5 | ||
| PANTHER | 302 | 422 | 121 | 1.3E-64 | – | |
| PANTHER | 302 | 422 | 121 | 1.3E-64 | – | |
| ProSiteProfiles | 333 | 367 | 35 | 6.643 | ||
| Pfam | 336 | 363 | 28 | 1.4 | ||
| Gene3D | 343 | 452 | 110 | 3.4E-15 | ||
| ProSiteProfiles | 368 | 402 | 35 | 8.802 | ||
| Pfam | 371 | 396 | 26 | 0.0011 | ||
| ProSiteProfiles | 403 | 437 | 35 | 8.977 | ||
| MobiDBLite | 453 | 475 | 23 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0401900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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