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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0406000 |
| Transcript ID | LotjaGi4g1v0406000.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonucleoside-diphosphate reductase; TAIR: AT2G21790.1 ribonucleotide reductase 1; Swiss-Prot: sp|Q9SJ20|RIR1_ARATH Ribonucleoside-diphosphate reductase large subunit; TrEMBL-Plants: tr|A0A0B2RLF4|A0A0B2RLF4_GLYSO Ribonucleoside-diphosphate reductase; Found in the gene: LotjaGi4g1v0406000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78221969..78227490) extracted from Lotus japonicus Gifu genome v1.2.
CCTCCCCTTACCCAAAAGAAGACAGAAACGGCGCCAAGAGACGAGAGAGCCTTCCTGTTTCTGCCTTTAATTTAAATGTG TGTGGTCCCCCCGCATCAACAACCGCACCCCACGCTCCATTTCATTTCATTTCATTCATTCACACACACTCTTTCCATTT TTAATTTTCAAAGTTCCAAACCCAACCCCAAATTCAGGCTCACCCTCGCGGGAAAATTTCGAAGAATTGGGAGGGAAAGG GAAAAACCTTATCATCATCACACACTACTCATTTCATTTCATTTCAAACCCTACTGTCTATATATACACTCACATCTTGC ACCCAAACTGTTCGAAGAAATTCTCCACTCAAAACCACTGCCGCCATAACCAACAAGATGTATGTGGTGAAGAGAGATGG GCGCCAAGAGGCGGTGCATTTCGATAAGATCACCGCGCGCCTTAAGAAGCTCAGTTATGGTCTCAGTACTGACCACTGCG ATCCCGTTCTCGTTGCTCAGAAGGTCTGCGCCGGGGTTTACAAGGGTGTTACCACTAGTCAGCTTGATGAATTGGCCGCT GAAACCGCCGCCGCCATGACTGCTAACCATCCTGATTACGCATCTGTCAGTTTCCCGCCCTTTTTCTTAGGGTTCTGAAA TTGTTAACTGTTAATACTCTATCTGATTTGCTTTGATTTTGCGTTTTGGTGCAGTTGGCTGCTAGGATTGCGGTTTCCAA TCTGCATAAGAACACCAGGAAGTCGTTTTCAGAGACGTAAGTCTGTTAGATTAGATGTGTATGATATTTTTATTTGTTTC GATGATTCCGATTCCGTGTTGTTAAGGCTTGAATTGTGGTATTTTCAGGGTTAAGATCATGTACAATCATTTCAATAATA GATCTGGGCTGAAAGCTCCACTAATTGCTGATGATGTATATGAGATAATCATCAAGGTAATGTGATTGTTCAATTGTGAT TTGGAATTGTCAATTGATGTTGTGGTGAATGATTTTTACTTTTTGATTTGTTTTTTATTACAATTGTGATTTTGAATGTT TAATTGATGTTTGTGGTGGATGAATTTTAGTTATTGATTTTGTTTTTTGTACAGTTGTGATTTGGAATGGTTAATTGATG TTTGTGGTGATTGAATTTCAGTTATTGATTTGTTTTTTTGTTGTTGTTATAGAATGCGGCTCGTTTGGACAGTGAGATTA TTTATGATAGGGACTTTGACTATGATTACTTTGGGTTCAAGACGCTTGAGAGGTCATACCTGTTGAAGGTTCAAGGGCAG GTTGTGGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGATGACATTGAATCTGCTGTTAAGAC TTATCACTTGATGTCTCAACGGTGGTTCACTCATGCATCCCCGACACTTTTCAATGCTGGAACACCTAGGCCTCAGGTAC TTTTGCTGTTTACACTCCATAATCGGTGATCTTGTTTTCTGTTTGATTAATACTGTATGGTGATAGTGGTGAAAATGGTT AAGTGGGTGAAAATTTAGCACATATTCAGCAATATGTAAATTTTTAAATTTTATATGCCGCAATTGAACACTATTCTATT AATAAAAATGTCTCTTGGATGCCAATTACCCCTTTTCTCATGTTTGTAGGTTTGTTCTTTTTATGTTGAATTGTTGATCT TAGACCTCTCATCTAGTTTATTTGCTTTTTGCAGTTGAGCAGTTGCTTCCTTATATGCATGAAAGATGATAGTATAGAGG GGATTTATGATACTTTGAAGGAGTGTGCTGTCATTAGCAAATCGGCAGGAGGAATTGGTGTTTCTGTTCACAACATTCGT GCCATGGGCAGTTACATTCGCGGAACTAATGGGACTTCCAATGGTGTTGTTCCCATGCTGCGCGTGTTCAATGATACTGC TCGTTATGTTGATCAAGGAGGAGGCAAGAGGAAAGGTAAATTGTTCATGCTTAGTTGTCAATTCTTATGTTTTATGAAAA TATCCAAGTTCTTTTATTTATGAATTTTGTGTGCTTGTTGTAGGTGCATTTGCGGTGTATCTGGAGCCATGGCATGCTGA TATTTTTGAATTCTTGGAACTAAGAAAAAACCATGGAAAGGTATGATCCTTTCTTTTATTCAGAAAGGGTGTGGTAACAA TTTTATTTGATTCTTGTGATTTAGTTTTGACCCTATTTCTTAGGTTATGCTAATTAAAGAATTCTTGATTTTATTGCCAC TTGCAGGAAGAGCACCGTGCTCGTGATTTATTTTATGCTCTCTGGTTGTCTGATCTCTTTATGGAAAGAGTTCAGAGTAA TGGGCACTGGTCCTTGTTTTGCCCCAATGAAGCACCGGGTTTGGCAGATTGTTGGGGTGAAGAATTTGAAAAGCTTTACA CTAAGTATGAAAGAGAAGTAAGTTTGATGATGATATTTAGTGTTTTGCAAGTTGCACAATTCCTAATATGTCTTTTGTTC ATTATTGTAACTTTTTTAACTGAATCCTTGTAGGGAAAAGCAAAGAAGGTTGTTGAGGCACAGAATCTTTGGTTTGAAAT TTTGAAGTCCCAGATAGAAACTGGAAATCCTTATATGCTTTTTAAGGTGGTCTACCAAAGACATGTTTAACTTTCTTAAA GTTCATTTCAATGACTTTTTAACTTTTTTTTCTTTGCATTGATCATTTTTTCATTTCTATATCCCAGGACACTTGCAACA GGAAAAGCAACCAGCAAAATCTTGGCACAATTAAGTCATCAAACTTGTGCACTGAGATAATTGAGTACACAAGTCCAACA GAAACAGCCGTGTGCAATCTTGCATCAATTGCTCTACCTCGATATGTAAGAGATAAGGTGAGAAATCCCTGGCATAATTC ATGTGTTAGGATTGCAGTTATATGAATTGCAGGCTAACTTGTTCGTGATTTGGTACGTTACTTGTTTATTGCAGGGTGTG CCCATGGAGTCTCATCCAACTAAGCTAGTTGGCAGTCTAGGCTCTAAAAATAGATATTTTGACTTTGATAAACTAGGAGA GGTACATTTCTTGTTACTCTTAACTACTAACAATGTTAGATGTTCTTTTTGTGTTTCAATGTGTGCTACTGTATTGACAT TATCTTTATATGCCTCAAGTCTTGTGATGGTATTAACTGGCTGTGACCAATTACAGGTTACTGCAACAGTGACGACAAAC CTTAATAAAATAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAAAGGTCTAACTTACGACACAGACCAATTGGTAT AGGAGTTCAGGGTCTTGCTGATACTTTCATACTACTTGGCATGGCATTTGATTCACCAGAGGTAAATATTGTTTGTGTGG TTGCAGATTAATTATCACTTTAATATTTTAAGCTAGATATTCTTCAACTAAATAGTTACATGGATATGCAGGCTCAGCAG TTAAACAAGGATATATTTGAGACTATATACTATCATGCTCTGAAAACTTCTTGTGAGTTGGCTGCAAAAGAAGGTCCTTA TGAAACATACAGTGGTAGTCCTGTAAGCAAGGTATCTTCTTGAAAGAATATTCCCCTTTTTTTAAGTGTCCTGACTCCTG AGTAGTTGTTATAGTTAGAGGCATGTTCCATCACTGAAGCACAGCTGCATATGTATACTGTATTTTTGTAGGCACAGAAT TAGAAATGTTTATCCAGGATCTTTGCAGTGGCTCAGCTGATTTTTGTGTTGCACAGGGAATTCTTCAGCCAGACATGTGG GGTGTGACACCCTCTGATCGTTGGGATTGGGGTGCACTTCGGAAGATGATATCAGAGACCGGTGTGAGAAATTCACTTCT TGTTGCCCCTATGCCAACTGCATCTACTAGCCAGATACTTGGCAATAATGAGTGTTTTGAGCCATATACTTCCAATATCT ACAATCGCAGAGTTTTAAGGTTTATTTCCATGCCATGTTATTATGCCTTGGTATCTTATTTGCTCTCTATCTTGTTTGTT AACTGTTTGTCTTTCAGTGGCGAATTTGTTGTAGTGAACAAGCATCTTCTTCACGACTTGACTGACATGGGATTGTGGTC TCCTGCAATCAAGAATAATATTATCTATGAGGATGGTTCTGTTCAGAATATCACAGAAATACCTAATGATCTGAAAGTCA TATACAAGTATGATAATTGTGATTTAGTGACCGACCAAAACTCGACTCCATTATTTTTGTGCTAACATAGTTTAAATTTG TCAGAACCGTTTGGGAGATCAAGCAAAAGACATTGGTTGATATGGCTGTTGATCGAGGATGCTTCATAGATCAGAGTCAA AGCTTAAATATTCACATGGAACAACCCAACTTTGGAAAGCTCACTTCCTTGCATTTTTATGCATGGTCAAAGGTATCAAT TTTTGACATTGGTTAAATTTGTCTCTAATAAAAATAAAAAGAGCTTCTATGCTTGGTTTTGATGTTCAATTTATATGTTT GCTTCAGCAATTGGCTCTGCCTCTGGGTTATTTCAATCTTTTGATCTTTTGCTGATTGATGTTTATTCCTTTCTATTTCA TCTTGAAAGGGTCTGAAAACCGGGATGTATTATCTCCGAACACGAGCTGCAGCCGACGCCATCAAGTTTACTGTTGATAC CGCTGCAATTAAAGTAAGAACAATTCACTGTGATCAATTTTCCCATTCATGTGATTTGTACATTTAAATGCTCAATATCT GTTGTAAATGCAGGACAAGCCTAAGGTGGAGGAGGATGATAATACCAAGATGGCACAGATGGTATGCTCTTTGACAAACC GAGATGAGTGCTTGGCTTGTGGAAGTTGAAACTAACTCATTAGCGTGTTTGGATTCTAATTAGTAAGGCTTAAAAGCATT TTTAATGGAAATCCATGTCGATGGTGGATTGAAATAAGTGTTTTTTAATGAATATAGTGGAAATCCAAACACACATAGAA TTGCTCCTCATTGGGTTATTTTCAGAGATAAATCGCTGTGCTAGCCTTGACTATGTATTCTTAAGCGCTTTGTATAGTAT TTATCTAGCTCTTAAATTCATTTGTAGTTTTGTACGCTTCATTGAATTTTCTTGTATTTGTATGTTAGAGGTATTTGTTT AAAGTATATGATAATGTTTGAAATATTAAGAATGTTATTTTTATGTACATTTACAAACTTGTTAAAGGACATAGAAGTGG ATCCAGAAATAAGTTAAAACTTTCCTATCTTATCAAATTCGGCAGTGTGAAAGTGGGAAAAACAAATTGCAGAAGCGAAG GGAAAATTGATAACCGATAACCTAAAGTCGGCAGTACTTGGGATAGTGAATTTGGGGGACGTGGTTCATTGAACTTGTAT CATTTCCTTCCGTAGTCATGATACAAGATGTCATTATCTTAACCAATCAGATTTAGTACGGTCATGGTACCCTAAAATCC AAAGCCGACATATTAAAATAATTGGGCGACTAGAAAATGCAGTGTGAAAATAGGTGTTTGATGAATTGATATTAGATTAA GA
CDS sequence (LotjaGi4g1v0406000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGTGGTGAAGAGAGATGGGCGCCAAGAGGCGGTGCATTTCGATAAGATCACCGCGCGCCTTAAGAAGCTCAGTTA TGGTCTCAGTACTGACCACTGCGATCCCGTTCTCGTTGCTCAGAAGGTCTGCGCCGGGGTTTACAAGGGTGTTACCACTA GTCAGCTTGATGAATTGGCCGCTGAAACCGCCGCCGCCATGACTGCTAACCATCCTGATTACGCATCTTTGGCTGCTAGG ATTGCGGTTTCCAATCTGCATAAGAACACCAGGAAGTCGTTTTCAGAGACGGTTAAGATCATGTACAATCATTTCAATAA TAGATCTGGGCTGAAAGCTCCACTAATTGCTGATGATGTATATGAGATAATCATCAAGAATGCGGCTCGTTTGGACAGTG AGATTATTTATGATAGGGACTTTGACTATGATTACTTTGGGTTCAAGACGCTTGAGAGGTCATACCTGTTGAAGGTTCAA GGGCAGGTTGTGGAGAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCACAAGGATGACATTGAATCTGCTGT TAAGACTTATCACTTGATGTCTCAACGGTGGTTCACTCATGCATCCCCGACACTTTTCAATGCTGGAACACCTAGGCCTC AGTTGAGCAGTTGCTTCCTTATATGCATGAAAGATGATAGTATAGAGGGGATTTATGATACTTTGAAGGAGTGTGCTGTC ATTAGCAAATCGGCAGGAGGAATTGGTGTTTCTGTTCACAACATTCGTGCCATGGGCAGTTACATTCGCGGAACTAATGG GACTTCCAATGGTGTTGTTCCCATGCTGCGCGTGTTCAATGATACTGCTCGTTATGTTGATCAAGGAGGAGGCAAGAGGA AAGGTGCATTTGCGGTGTATCTGGAGCCATGGCATGCTGATATTTTTGAATTCTTGGAACTAAGAAAAAACCATGGAAAG GAAGAGCACCGTGCTCGTGATTTATTTTATGCTCTCTGGTTGTCTGATCTCTTTATGGAAAGAGTTCAGAGTAATGGGCA CTGGTCCTTGTTTTGCCCCAATGAAGCACCGGGTTTGGCAGATTGTTGGGGTGAAGAATTTGAAAAGCTTTACACTAAGT ATGAAAGAGAAGGAAAAGCAAAGAAGGTTGTTGAGGCACAGAATCTTTGGTTTGAAATTTTGAAGTCCCAGATAGAAACT GGAAATCCTTATATGCTTTTTAAGGACACTTGCAACAGGAAAAGCAACCAGCAAAATCTTGGCACAATTAAGTCATCAAA CTTGTGCACTGAGATAATTGAGTACACAAGTCCAACAGAAACAGCCGTGTGCAATCTTGCATCAATTGCTCTACCTCGAT ATGTAAGAGATAAGGGTGTGCCCATGGAGTCTCATCCAACTAAGCTAGTTGGCAGTCTAGGCTCTAAAAATAGATATTTT GACTTTGATAAACTAGGAGAGGTTACTGCAACAGTGACGACAAACCTTAATAAAATAATTGATGTTAATTACTACCCAGT TGAAAATGCAAAAAGGTCTAACTTACGACACAGACCAATTGGTATAGGAGTTCAGGGTCTTGCTGATACTTTCATACTAC TTGGCATGGCATTTGATTCACCAGAGGCTCAGCAGTTAAACAAGGATATATTTGAGACTATATACTATCATGCTCTGAAA ACTTCTTGTGAGTTGGCTGCAAAAGAAGGTCCTTATGAAACATACAGTGGTAGTCCTGTAAGCAAGGGAATTCTTCAGCC AGACATGTGGGGTGTGACACCCTCTGATCGTTGGGATTGGGGTGCACTTCGGAAGATGATATCAGAGACCGGTGTGAGAA ATTCACTTCTTGTTGCCCCTATGCCAACTGCATCTACTAGCCAGATACTTGGCAATAATGAGTGTTTTGAGCCATATACT TCCAATATCTACAATCGCAGAGTTTTAAGTGGCGAATTTGTTGTAGTGAACAAGCATCTTCTTCACGACTTGACTGACAT GGGATTGTGGTCTCCTGCAATCAAGAATAATATTATCTATGAGGATGGTTCTGTTCAGAATATCACAGAAATACCTAATG ATCTGAAAGTCATATACAAAACCGTTTGGGAGATCAAGCAAAAGACATTGGTTGATATGGCTGTTGATCGAGGATGCTTC ATAGATCAGAGTCAAAGCTTAAATATTCACATGGAACAACCCAACTTTGGAAAGCTCACTTCCTTGCATTTTTATGCATG GTCAAAGGGTCTGAAAACCGGGATGTATTATCTCCGAACACGAGCTGCAGCCGACGCCATCAAGTTTACTGTTGATACCG CTGCAATTAAAGACAAGCCTAAGGTGGAGGAGGATGATAATACCAAGATGGCACAGATGGTATGCTCTTTGACAAACCGA GATGAGTGCTTGGCTTGTGGAAGTTGA
Protein sequence (LotjaGi4g1v0406000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYVVKRDGRQEAVHFDKITARLKKLSYGLSTDHCDPVLVAQKVCAGVYKGVTTSQLDELAAETAAAMTANHPDYASLAAR IAVSNLHKNTRKSFSETVKIMYNHFNNRSGLKAPLIADDVYEIIIKNAARLDSEIIYDRDFDYDYFGFKTLERSYLLKVQ GQVVERPQHMLMRVAVGIHKDDIESAVKTYHLMSQRWFTHASPTLFNAGTPRPQLSSCFLICMKDDSIEGIYDTLKECAV ISKSAGGIGVSVHNIRAMGSYIRGTNGTSNGVVPMLRVFNDTARYVDQGGGKRKGAFAVYLEPWHADIFEFLELRKNHGK EEHRARDLFYALWLSDLFMERVQSNGHWSLFCPNEAPGLADCWGEEFEKLYTKYEREGKAKKVVEAQNLWFEILKSQIET GNPYMLFKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASIALPRYVRDKGVPMESHPTKLVGSLGSKNRYF DFDKLGEVTATVTTNLNKIIDVNYYPVENAKRSNLRHRPIGIGVQGLADTFILLGMAFDSPEAQQLNKDIFETIYYHALK TSCELAAKEGPYETYSGSPVSKGILQPDMWGVTPSDRWDWGALRKMISETGVRNSLLVAPMPTASTSQILGNNECFEPYT SNIYNRRVLSGEFVVVNKHLLHDLTDMGLWSPAIKNNIIYEDGSVQNITEIPNDLKVIYKTVWEIKQKTLVDMAVDRGCF IDQSQSLNIHMEQPNFGKLTSLHFYAWSKGLKTGMYYLRTRAAADAIKFTVDTAAIKDKPKVEEDDNTKMAQMVCSLTNR DECLACGS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 808 | 808 | 0.0 | ||
| PANTHER | 1 | 808 | 808 | 0.0 | – | |
| ProSiteProfiles | 1 | 92 | 92 | 19.296 | ||
| Pfam | 1 | 89 | 89 | 1.3E-15 | ||
| SUPERFAMILY | 6 | 214 | 209 | 1.7E-66 | ||
| Gene3D | 74 | 768 | 695 | 0.0 | – | |
| Pfam | 142 | 212 | 71 | 2.8E-24 | ||
| TIGRFAM | 145 | 761 | 617 | 2.1E-215 | ||
| CDD | 167 | 760 | 594 | 0.0 | – | |
| SUPERFAMILY | 215 | 770 | 556 | 1.04E-192 | – | |
| Pfam | 216 | 757 | 542 | 7.1E-188 | ||
| PRINTS | 293 | 312 | 20 | 8.0E-67 | ||
| PRINTS | 423 | 434 | 12 | 8.0E-67 | ||
| PRINTS | 480 | 503 | 24 | 8.0E-67 | ||
| PRINTS | 518 | 540 | 23 | 8.0E-67 | ||
| PRINTS | 546 | 569 | 24 | 8.0E-67 | ||
| ProSitePatterns | 600 | 622 | 23 | - | ||
| PRINTS | 611 | 638 | 28 | 8.0E-67 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor | Catalysis of the reaction: 2'-deoxyribonucleoside diphosphate + thioredoxin disulfide + H2O = ribonucleoside diphosphate + thioredoxin. Thioredoxin disulfide is the oxidized form of thioredoxin. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | Oxidation-reduction process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. |
Expression pattern of LotjaGi4g1v0406000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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