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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0406600 |
| Transcript ID | LotjaGi4g1v0406600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription elongation factor (TFIIS) family protein; TAIR: AT5G09850.1 Transcription elongation factor (TFIIS) family protein; Swiss-Prot: sp|F4KFC7|MD26C_ARATH Probable mediator of RNA polymerase II transcription subunit 26c; TrEMBL-Plants: tr|I1KTE5|I1KTE5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0406600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78297167..78302737) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGCCATAAGCTTAGAGTCTTCATTAGGAAAATAGGAAGATAACCACACAATAAGCTTAGATTCTTCATGAGGAAAAG AGGAAGAGAACCACAACCAGAGACCACACCATAAGCAACAACCCAGAAACCATTATAGAACCCAAACCCCATCTCCATCA TTGGAATCCACTAACATTCCCTCATAATAGGACCTCACATATATTAGAACCCGAACACGAAAACTTAAACCTATCGAAAC TCCGGTTACGGAACCTTAAACACCATTGGCATCTAACCTCAACCTTTGGTAACCAAAATAGATTTAAACATGATACAATC AATTGATCATAATATATAAAACAAACAAAAAAATAAATTTTATGTATTAAATTTCTCTTACAATTTTAAGAAAACGAATA CAGTTAAAGTGTGTCTGATCCAATTCCCTATGATTTCTCTCTCTTGTCCATTTGCCCCTTCATCTCCCTTTGCACACACC AAACAAAGCAAAAAACCAGCTTCTTAGAAAGAGAAAGAGAAAGAGATAGACCCAACACGCATTGGTCATGTTATTGGTCA TCGCATCGCACTGTGCATAATCATAATCATCACCATAATATTAATAATTAGTTAATCAAGTTTCGTCTAACATTAAATCC ATTTTCTTCTGTTTTGCTTCCATTATCCAAAACCCATAAACCGTTCCATTTCCCTGATTTTCTGATTTTCTTTGTTTGTT TCTGCGTCGTTTGGATTCAGATATGGATTTGGATGATTTTCGATCCATATTGGATACTGCCGGCGTCGATGTTTGGGTGT TAATGGACGCCGCCATCGACGTCGCCTCCGTTGACCACGCCTCCGAGTTGCGCCGCCGCAGAGACGCAATCGTCGAGCGC CTTTACACGGCGGCGGCTCCGTCGCGCTGCGGAAACTGCGAGGCCGGTGATGGTGGTGCTGGAGAAGCACCACCGAAGCA GAGCAGTCCCTCAACGGAGGTGGAAGAGGAGGAGGAAAAGGATCCTTTCGGTGGCTTGTTCGATGATGAGCAGAAGAAGA TTCTGGAAATCAAACTGCAACTTGAAGACCCAAACCAGGTATTGTTCTTCAATTTCCCCCCATTTTTTGTTTGATTTTGT AACTGTGTTTCTGATTTTTGTGTTTTGTTTGCTTCATTAGTCTGAGGATTCATTGGTGGAGTTGCTTCAGAATCTTGCAG ACATGGATGTTACATTCCAAGCATTAGAAGTAACTTCCTCTCATTTTCTTTTTCAGCTTCACCTTTCAAATTTTCAATTG TTTTTGTTTTGAACTTCAAGTTAATCTGAATCTGTAGGAGACTGACATTGGGAGGCATGTGAATCGTTTGCGGAAGCATT CGTCCAATGAAGTTAGGAGATTGGTCAAGCTACTTGTCAGGTTCTGTAAACACTAAACACCTTTTATTTGTTTTTGGTTT TAGTTTTTGATAGTGGTGTTCATTGCAGAACATGTTATGAGAGGAAATTGATTGGATTTTAGGTGTTTTTGTTTCCAGGA AGTGGAAGGAACTTGTAGATGAATGGGTGAAGTTCAAGACACCGGGAGAAGCGGCGGCCACATCTGTTATGGGTAAATCT TAACTTAGAACCCGTTCTGATGCAGACAAAAGAACACTTATTAGAGTTTATCTAGTGTTTTTTTAGTAGATACTTTGTTT CCGTATGGACCGTGTCTATAGAGAGTAAGATACTCTCATACTCCTAATCTTCATTTGGTGAAAATTTTGGAATACTTTAA AGTGACAATGGAAGACTTTGGTTTATGCTGAATTGATGAAAATGTTGATTGTTCATGTTTGTTGGCATGGCAGGTGATGA AGACTCACCTCAGCAGAAAACCCCACAAAACGGGTATCATCAGGTTTAGTGAAAGAAATCCCTTTTTTGACAATCTAGTA CTTTTCCCAGGAAAGATGAGGCTTTGTTTGGAAGTTTAGCTTTCTAATATTCCATTCTGTTTGCAGATTCCTGATTTTTC ATGCTCGCCAAATCCACACAGTGAGTTTAGAATCTGAACAAGCTTCCAAAGTTTCCTAGGTTGTCGTTTGGATTTGGTTG ACAATTTGACACATGTTTCACTTTCTTGTTCACACAGATGGTAGTTTTGGGTTGGAGGGCAACAATAGTGTAGCTGAACC AAAGCCGAAAGCAATTCCACGCAAAGAAGCGCGCCCAAAACCGGCACCATCACCACCATCAGTCCCAACTCCTCAAAATG TACGGATATGATTTGATAACCTTTTTGGAGTCCCTGACCTTAAAATCACATGAGAAGTTTTAAATGTGGGTAGAGGTTAG CTCCATTGGGTATGCAGGATCATCGGTGTAAGCTGACAAATTATTGAATGATTGCAGAGACAGAGAGAACAGAGAGATAA TAATCTGGAAGCGGAGAGACTTGCTTCAGCAAGAAAGAGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGGTGAAGTTT TTGTTTCCTTATGTTTTTCATTTTTGTCCTAATTAAGTGTTGTTTCTTTGGTTAGTTCTTTACATTGTTACTTGTACTGA CTGATCATTTTGTGTTGTGTGTTGGGGGTGTCTAGCCAAAAAGCAAAGAACAATTCAGGTGATGGACCTCCATGAGTTGC CAAAGCCAAAGAATAAGAATACCTTCTTTGCAAAGAACAAAGGCGGCGCCGGTTCTAATGGAAGGCACTGGTGATAGTGA TAGTAATAATGATACTGAGGCCGGATAAATCCTGAACACAGCTGATGATCATTGATCCCTTCATATACTTCATCCCCAAC ATGAGAAAACCTTTGTGGTTTTTTGTTTACTTAATTAGGTGTTAGCCGTGTTATCCCAAAATAATCCACACTATTTATTA GACTATGCTTTTTTATGAAATGATGGGTTAGGTGGAAGCACATTTCAGGATGAAGATGGAATTGTGTGGGGAAATGATTT TTTAAGATTTGATTAAAACATTGGTCTTTTGAGTTGGAGCCTGAAGGCCTGGTTAAACTTCAAATGGTTAATGGTTTCTT CGGTGTTCAATTGAGGACAGTTGAGTTTTGTCTGTGTTTGTTTTTGTTCTTATCTCATTGCCCCATCCATTTCTAGAGAG TTGACCACTTGATACATTTACCGAATTATGTGGGTGCGGGTCGCATAGGTGGGGATTTAGATTGGTGCAGCATTCAAATG TTGTCTGTTGTGGGCACAAGTTGTCTAGACTCTAGAAAGTGAGCTGATCTTAAAATCTCACCACATGAAACAGATAGCAT TTTGGTTCATTGTGCATGTGCACTATGTTCCCTTGCGGTAAAGAAGTTAAGTGCAACGTGAACGAACTTTTAAAATTATC TACGTAGGCACTAAGGCGCGTGGCTAATTCCTCACCTCACGATCAATGCACTAAGTGATAGGAGGTTGATTAATGAGTTT CTTTTACGTTCACAAAGAGTTGAAAATTAAACTCTTATCACTTACGTATGAGATGCATCATTGCTGAACTACTATGTCAA CCCCTTGGTTGGAGCGTTTGATAAAGAAGTACTTAGAAGAAAAACATATATGGTGACACTAGTGGAGTTATTATATGATT TTAATAAATCATTTGTATGGTTATTACTTATTAGAGACTGAGTTGTACTCAGTTATACAGTTATAGCAGTGCTGGAATTT GGTTAACTGCTAGAATTAGTTAGAGTTCCTAAAGCTGCTCTTTGTAACTTTCATCCATTCATGAATTAAGAAACAGAAGT ACAGAACTGTTTATTTTGCCGCTTAGCATTTCTTATGATTTTTCTCGGTAGCCTAGACCATTGCTGCTGGGTTATTTTAC AAAACTCATGACTGTAGTGACTAGTGACTGATAACTATATTTTGTGTGTTTTTTGTACCATAACATCTAATATTTTCCAT TTTTACATGTTATTATGGTAGTCTGCACGTGCCAATTGATGAGTTCCAAAGAAATAACCTACCAAATTGGTTAGTTCATA TGCATGCGACACATAAGGAGGTTCATTGGTTGGTTAGGCTTGTTTAGGTTCAGTACCAAGTCCTAATTACATGTAACGGC TTAGACAAATTAAGCAAAAAATACCATAACAGCCTAAAAAGGAATTTAATTTGGGGACAACTAGAAAGTGGAGTTTATCT AGGATATGTCTGATACAGGGTAAAGCCTCACAGTTACTTTCCAATGTACCCTAAAAAAATTGCTTCACGGAGCTGCGGGA TAATGGGCTAACAAAGATGGAGATACAATTGGGATCTGAAAAAGATAACCCTTTGTCCAAAAAAAAAAGATAATCCCGTT TTTTTTTTGTTTTGGTCAAAAGAAAGAAAACCCGATCTTATGGGGGATTAGAGCAACTAGATTAAGAAATCTTTGGGGGA AGGGGATGCAACTAGATTTTGGCTGGAGGATTGGCTAGGTTCGGGACATTTGGAGGGAAGATTTCACAGACTGTATAATT TATCTCAAAACAAGTATGCTACTGTTAAGGAGGTGGGGGAGTGGCGTCAGGGTATTTGGGAGTGGAAATTTACATGGAGG AGGGGGTTGCGAGGTAGGGAGTTAGGGTGGCTTGATATACTGCTCAATACTATTAATATTGGTTGTCTGCGGGAAGGGAG GCCGGATAGGTGGTTGTGGGAACCAGGGGAGGAGGGAGTTTATTCGGTTAACTCAGCTTATTCTTTTTTGCAGGTTAGCG ATTTCGTGGATTCTGATATTGATTTCCAGTCAATTTGGAATGGATTTGCTCCATCAAAGGTGAAAGCCTTTGTTTGGCGC ATGTTGCTCAACCGGATCCCGACAAAGGTTGACTTGAGGAGGCGCAGTGCGATTCCTGCAGCTGCGAATTTGCTTTGCTC TCTTTGTAATATTGAAGAGGAGAGTTGTGATCACTTGTTCTGTACTTGTGCGCGATCTTTGGATGTTTGGCTTGCCGTTC ATCGCTGGTTTGGATTTGTTACAGCTGTGCCTTCTTCGTCAAAGTCTCTCTTTAGCCAGTTTTAATTCTTGGCCAGAAAC AAGAAACAGAGGCTTGCGGAGATGACGGTATGGATGGCTTCTTGCTGGTCCTTATGGCTTATGCGCAACAGTATTATTTT TTCAGATGGGGTTTGGGATGATGATTTTGTTTTGGACCTAATACAAGTCAGGTCCTGGTACTGGATAAAGGAGAAAGTGA GGGGGTTCTATTATTCATTGTTTGAATGGAAGACCAGCCCTTTAATTTGTCTTTCATCTGTGTGAAATTCGCTGGAGACA TGGGTGGGTTGTTTATTAGCTTGGATTCATCTTTGGTACATGCTCTTGTTGCTGCCTACGAATTGGGTGTCTGTTGGCTC ATGGGGTTGTTTGTGCTGCTATGGCAATGTGGGGTTGGGTAGTTGGTATCATGTAAGTTTGTACCTCAAAGTAGGGGGGT TTTTGCTTGTTGCAGTCTGATTGTACTGTTCTTTTTTCTTTTTCTTCATCTCTTTTCTTGTATTTGGGTTTAGCACCCCT TGTGCTTTTTTTAAATACAATTCTTTGGCTTATCAAAAAAAAAAATATGTG
CDS sequence (LotjaGi4g1v0406600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTTGGATGATTTTCGATCCATATTGGATACTGCCGGCGTCGATGTTTGGGTGTTAATGGACGCCGCCATCGACGT CGCCTCCGTTGACCACGCCTCCGAGTTGCGCCGCCGCAGAGACGCAATCGTCGAGCGCCTTTACACGGCGGCGGCTCCGT CGCGCTGCGGAAACTGCGAGGCCGGTGATGGTGGTGCTGGAGAAGCACCACCGAAGCAGAGCAGTCCCTCAACGGAGGTG GAAGAGGAGGAGGAAAAGGATCCTTTCGGTGGCTTGTTCGATGATGAGCAGAAGAAGATTCTGGAAATCAAACTGCAACT TGAAGACCCAAACCAGTCTGAGGATTCATTGGTGGAGTTGCTTCAGAATCTTGCAGACATGGATGTTACATTCCAAGCAT TAGAAGAGACTGACATTGGGAGGCATGTGAATCGTTTGCGGAAGCATTCGTCCAATGAAGTTAGGAGATTGGTCAAGCTA CTTGTCAGGAAGTGGAAGGAACTTGTAGATGAATGGGTGAAGTTCAAGACACCGGGAGAAGCGGCGGCCACATCTGTTAT GGGTGATGAAGACTCACCTCAGCAGAAAACCCCACAAAACGGGTATCATCAGATTCCTGATTTTTCATGCTCGCCAAATC CACACAATGGTAGTTTTGGGTTGGAGGGCAACAATAGTGTAGCTGAACCAAAGCCGAAAGCAATTCCACGCAAAGAAGCG CGCCCAAAACCGGCACCATCACCACCATCAGTCCCAACTCCTCAAAATAGACAGAGAGAACAGAGAGATAATAATCTGGA AGCGGAGAGACTTGCTTCAGCAAGAAAGAGGCTTCAAGAGAACTACAAAGAGGCTGCAAATGCCAAAAAGCAAAGAACAA TTCAGGTGATGGACCTCCATGAGTTGCCAAAGCCAAAGAATAAGAATACCTTCTTTGCAAAGAACAAAGGCGGCGCCGGT TCTAATGGAAGGCACTGGTGA
Protein sequence (LotjaGi4g1v0406600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDLDDFRSILDTAGVDVWVLMDAAIDVASVDHASELRRRRDAIVERLYTAAAPSRCGNCEAGDGGAGEAPPKQSSPSTEV EEEEEKDPFGGLFDDEQKKILEIKLQLEDPNQSEDSLVELLQNLADMDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKL LVRKWKELVDEWVKFKTPGEAAATSVMGDEDSPQQKTPQNGYHQIPDFSCSPNPHNGSFGLEGNNSVAEPKPKAIPRKEA RPKPAPSPPSVPTPQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKNKNTFFAKNKGGAG SNGRHW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 326 | 326 | 4.4E-140 | – | |
| PANTHER | 1 | 326 | 326 | 4.4E-140 | – | |
| MobiDBLite | 56 | 92 | 37 | - | – | |
| Gene3D | 93 | 182 | 90 | 7.7E-23 | ||
| ProSiteProfiles | 95 | 172 | 78 | 26.689 | ||
| CDD | 97 | 170 | 74 | 8.04445E-20 | – | |
| SUPERFAMILY | 98 | 178 | 81 | 3.01E-20 | ||
| SMART | 100 | 171 | 72 | 5.0E-11 | ||
| Coils | 117 | 137 | 21 | - | – | |
| Pfam | 120 | 169 | 50 | 4.3E-12 | ||
| MobiDBLite | 183 | 326 | 144 | - | – | |
| MobiDBLite | 188 | 223 | 36 | - | – | |
| MobiDBLite | 260 | 287 | 28 | - | – | |
| Coils | 268 | 295 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. |
Expression pattern of LotjaGi4g1v0406600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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