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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0407300 |
| Transcript ID | LotjaGi4g1v0407300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G49230.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78; TrEMBL-Plants: tr|I3S112|I3S112_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0407300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78345349..78346516) extracted from Lotus japonicus Gifu genome v1.2.
TAAAAACAAAGCAAGACAAAACAACAAAAGAAAAAGAAAACTAGCCACAACCCATCAGAGGCATAATCTAATGAAATCAC TCACCAAACAGTAAAAGTTACATTATCTAATGAAATCCAGATATCATATCCAACCATGTTAACTTGCCTATATAAATACA CATTCCCCTAGATAACCACCATCAATTCAAGTTCTAACCAACTCATCAATAACAACAACAAACAACACACAACATGTATG CTTCTACTTCCTTCACTTCACAGCTTATCCATGATCTTCTTGTGGAAAATTCCCCACACACAAGAAAGCTACTTCTTCAA TTTCCAATTGATCACCATCAAATTCAATCACCCACCTCTTCACCTTCCATGATGAACTCATCAACAACAGATTATTCATA CCTCGGAAACCGCAAATTCGACGCGAACGTTGTGATGATACTTGCTGTCCTGTTGTGTGCTCTGATCTGCTCACTGGGGT TGAACTCCATCATAAAGTGTGGGTTGAGATTCTCCAACATAGCCATCAACGATTATAGCGGGACCAACAACCATAGCGCC TCGCCTCGATCGGCCAGCAAAGGGATCAAGAAGAAAGCTCTTAAGAAATTCCCCACAATGAGTTACACAGCAGAGTTGAA ACTGAAACTCCCTGGTTTGGATACAGAGTGTGTGATTTGCCTCTCAGAGTTCACAGACGGAGAGAAGGTTCGTGTTTTGC CGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAGTGGTTGAGTTCACACTCTTCATGCCCCAAGTGCAGACAG TGCCTTCTTGAGACTCAAAAGGTTGTTGGGTCATCACAAGTACAACCACAACAACAACTAGAAGCTGTGTTGCCAGTGCC AGAGGTCGTTATAAGGATTGAACCATTAGAGCCAGAAGGTGTGGAACGTAGCTATAGATGACCAAACCAATCGGAGCTAT GATCACATTGTGGTGTTTTAATTTATTTGTTGCTGAATTGAGCTAGTTCAAATTTATTGTTGGTTTAGTTGCTTTACCAA GACCCCAAGTGTAAATTAAAGTAGTTCAAATTTTAAGGTTGCCATTATTTTTCAGGAGAAATGCTAGATGAAGTAAACTT ATCATTACCAACTTTGAAACATTCTCACTCATTTTCACTTCAATCTAT
CDS sequence (LotjaGi4g1v0407300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATGCTTCTACTTCCTTCACTTCACAGCTTATCCATGATCTTCTTGTGGAAAATTCCCCACACACAAGAAAGCTACT TCTTCAATTTCCAATTGATCACCATCAAATTCAATCACCCACCTCTTCACCTTCCATGATGAACTCATCAACAACAGATT ATTCATACCTCGGAAACCGCAAATTCGACGCGAACGTTGTGATGATACTTGCTGTCCTGTTGTGTGCTCTGATCTGCTCA CTGGGGTTGAACTCCATCATAAAGTGTGGGTTGAGATTCTCCAACATAGCCATCAACGATTATAGCGGGACCAACAACCA TAGCGCCTCGCCTCGATCGGCCAGCAAAGGGATCAAGAAGAAAGCTCTTAAGAAATTCCCCACAATGAGTTACACAGCAG AGTTGAAACTGAAACTCCCTGGTTTGGATACAGAGTGTGTGATTTGCCTCTCAGAGTTCACAGACGGAGAGAAGGTTCGT GTTTTGCCGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGACAAGTGGTTGAGTTCACACTCTTCATGCCCCAAGTG CAGACAGTGCCTTCTTGAGACTCAAAAGGTTGTTGGGTCATCACAAGTACAACCACAACAACAACTAGAAGCTGTGTTGC CAGTGCCAGAGGTCGTTATAAGGATTGAACCATTAGAGCCAGAAGGTGTGGAACGTAGCTATAGATGA
Protein sequence (LotjaGi4g1v0407300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYASTSFTSQLIHDLLVENSPHTRKLLLQFPIDHHQIQSPTSSPSMMNSSTTDYSYLGNRKFDANVVMILAVLLCALICS LGLNSIIKCGLRFSNIAINDYSGTNNHSASPRSASKGIKKKALKKFPTMSYTAELKLKLPGLDTECVICLSEFTDGEKVR VLPKCNHGFHVRCIDKWLSSHSSCPKCRQCLLETQKVVGSSQVQPQQQLEAVLPVPEVVIRIEPLEPEGVERSYR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 235 | 235 | 1.5E-109 | – | |
| PANTHER | 1 | 235 | 235 | 1.5E-109 | – | |
| Phobius | 1 | 65 | 65 | - | – | |
| TMHMM | 65 | 87 | 23 | - | – | |
| Phobius | 66 | 87 | 22 | - | – | |
| Phobius | 88 | 235 | 148 | - | – | |
| Gene3D | 102 | 192 | 91 | 6.3E-22 | ||
| SUPERFAMILY | 140 | 194 | 55 | 4.04E-22 | – | |
| Pfam | 145 | 188 | 44 | 1.5E-14 | ||
| CDD | 145 | 188 | 44 | 5.01523E-18 | – | |
| SMART | 146 | 187 | 42 | 8.7E-8 | ||
| ProSiteProfiles | 146 | 188 | 43 | 12.696 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0407300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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