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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0407400 |
| Transcript ID | LotjaGi4g1v0407400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT1G49230.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q6NQG7|ATL78_ARATH RING-H2 finger protein ATL78; TrEMBL-Plants: tr|I3S112|I3S112_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0407400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78354109..78358401) extracted from Lotus japonicus Gifu genome v1.2.
CTTTATCAAACCTCTATGCCAAAACCCCTTAGGAATATTCTAATCAACAAGCAATAGGATCACTCACAAAACAGTAAAAG TTTCATTATCTAATGAAATCCAGATACCAAATCCAACCATGTTAACCTCCCTATATAAACATACAGTCCCCTATGTAACC ACCATCAACTCAAGCTCTAACAACAACAACAACAACAACAACAACAACATGGATGTTTCAACTTCCTTCACTGCACACCT TATCCATGACCTTGCTGTGGAATACTCCCCCCATACAAGAAAGCTACTCCTTCAATTTCCACTTCACAATCAATTATCAC CCACTTCCTCACCTTCCATTAAGAACTCAACAACAGATTCATACTTCGGAAACCGCGAATTCGATTCAAACGCTATCATG ATACTTGCTGTCCTGTTGTGTGCTCTGATCTGCTCACTTGGCTTAAACTCCATCATTAGGTGTGGCTTAAGATTCTCCAA CATAGTCATCAACGATTACAGCGGAACCAACAACAATAGCCCTTCACCTAGATTGGCCAACAAAGGAATCAAAAAGAAAG CCCTTAAGAAATTCCCCATAGTGAACTACACACCAGAGCTGAAACTGAAACTCCCTGGTTTGGACACAGAGTGTGTGATT TGCCTCTCAGAGTTCACAGACGGAGAGAAGGTGCGTGTTTTGCCGAAATGCAACCATGGTTTTCATGTTCGTTGCATTGA CAAGTGGTTGAGTTCACACTCTTCATGCCCCAAGTGCAGACAGTGCCTTCTTGAGACTAAAAAGGTTGTTGGGTCATCAC AAGTACAACCACAACAACAACTAGAAGCTGTGTTGCCAGTGCCAGAAATTGTTATAAGGATTGAACCACTAGCGCCAGAA GGTGTGGAACGTAGCTATAGATGACCAAACAAATCAGAGATCATTATAGATCACTGCGGTTTTTAATTTATTTGTTGCTG AATTGATGTTTATTACAACTGAAAATTTCAGTTGGCTCACGTTTTGACCCAAACTGTATAAAAAAACTAGTTCAAATTTT GTGGACATTAATTATTTTTGCCCAAGACAATTTTCCAGATGAATCGAACTTTTCTGCACTGCAAGTACTGAAGCATGTAA ATTTGTAACTCCCATGCATACTCATATTTTTTATTTATTTCACATTCCAGAATTTCATTAGTAGAATAAAAATTATAGGG GACTGAAGATTTCAATCCCAAATTTAAAAATTTATTTAAAGGGAATCAAGCAAATAACCAACCACCCGTCAATACTCTTT GTTTTATTTCTCAATGAATTATATTTTTTATCAAAAAAAAAATGTTTGAGGTATACAAATTATATACTAAAAAATAAGGA TAAAAACCTTGTTATAGAAACTTGGTATTTGATCGATAAGCAAATAAGTAGGAAACTGATAGCTGATTAGTTAAATAATT GTAGTAAACTTGAGAGTTGTTTTGTAAAAAATTGGCTTAATTATATTTTTAGTCCCTATAATTTTAGGAATGTATAATTT TGGTTCCTATAATTTCAATTGCTTAAATTAAAACCCCTTCATTATTTAAATCGATTTTTTTTTTTGTTTATATGGTAACT TATCATCTAGTAACTTATAGAAGAAAATTGATATATTATTACAAATTTTTATGTCAAAAGTAACACAAATCATCTTAAAA TGTTTACGATAAAAATTATGATACACATCATTTTTTCCCCTTAATTGTTATTAACCAATTAACATCTAAACTAAATTTGC CCATTTTTGAAAGTGCAACTGCATAATTGCTTAAAAATTTAAATCCTAACTAGTTGTACAGCTAATATAAATCCTAACTA CAGTTGTCACTAAAATAGATGTGAGCCAATGTTTTTAATAGAATCCACGTGAATTAAATTAGTCAATGAAAAATATGAAA AATATTAAAATGAGTGTTACTAGTATTTTTCTAATTTAGAAACAAGCCAAAATAACTAAATACTTCATTTGTCCCTAAAT ATAAGGTCATCTTAAGACAATTATGCTTATTAAAAAAATATGTAATGAGATGAATTAATGCATTGGTTTTAAAAAAAATT ATACAATCTTCACATTTACTGTTAAATAATGTATTGAGTAGTGTAGAAAAACATTAAGTAAAATAGTTATCAAAATTTTA GAATTACAAAAGTATAAGGGTGAAAAAGAATAATAAATTAAATGTTTCTAGAAACTAGTAAGGAGCCTATATATAAAAGG ACATCAAATAAATAAATATAAAAATAAATAAATAAAGGGTCTTATAATTAGAGACAGTAAAAGTATAAAATTAGTGAAAC TGGTCGCATCTAGAAGAGTGTTCGACCTAGCAACCGGAAAGTTGAGAAGAAAATCTATATTTACCCTACATTAATCTTAA TTTTCTCATTATATGAGATAGTTTTCGTTTGGTTAATTATTCTCTATCTAATCTAATTATCCAATTCCTTTTTAACATGA ATACTTATTTGTTCTTGAATGTTGTTATTCATTCATAATTTTCACTTTATTTACATCTCAATTATATTTATCTTTCTTTT CTTTTTCAATCCTATTATATTATCACTTCTGTCCATTTTATTCACACTAGCTTAATTACACTTTTTCATTTTAACACTTG TATAAACTTTTTGTTCACTTGAACAACTAGTATTTTTCCAAGTACCCACCTTCTCATCTTTTGCGATTTTTAACAATTGA AATCCAATTAAGGAGATCACCAAGCAGATCAAATCTTAATATGCCTATAGTATTGCCCTCTTGGCCTCTCATATCTTCAA GTACTGAAGATCTTGGTCTTGATTTCTTTTATTAGAAAAACATTAAAACCCCTGTTCTGCCAAAACCCCTTAGGAATATT CTAATCATTAATCAACAAGCAAGATCACTCACCAAACAGTAAAAGTTGCATCATCTTATGAAATCCAGATACCATATCCA ACCATGTTAACCCCCCTATATAAATATACAACCCCCTATGTAACCACCTGATCAACTCAAGCTCTAACAAACTCATCAAC AACAAACAACAACAGCATGGATGCTTCAACTTCCTTCACCCATGACCTTGTTGTGGAATACTCCCCCCATACAAGAAAGC TACTCCTTCAATTTCCACTTCACAATCAATTATCACCCACTTCCTCACCTTCCATCAAGAACTCAACAACAGATTCATAC TTCGGAAACAGCGAATTCGATTCAAACGCTATCATGATACTAGCTGTCATATTGTGTGCTCTCATCTGCTCACTGGGGTT GAACTCCATCATCAGGTGTGGGTTGAGATTCTCCAGCATAGTCATCAACGATTATAGCGAGACCAACAACAATAGTGCTT CACCTCAATTGGCCAATAAAGGGATCAAGAAAAAAGCTCTTAAGAAATTCCCAACAGTAAACTATACAGCAGAGCTGAAA CTACCTGGTTTGGATACAGAGTGTGTGATATGCCTCTCTGAGTTCACCAACGGAGAGAAGGTGCGTGTTTTGCCGAAATG CAACCATGGTTTTCACGTTCGTTGCATTGACCAGTGGCTGAGTTCACACTCTTCATGCCCCAAGTGCAGACTGTGCCAGT GACAGATCCAGAAATTTTATTTAGTGAGGGCAATAAATACATATAAATTTGTACACAAAAAAAATACATATATTAATAGA AGTGAGGACATTTTTTACCAAAGAGGACACAAGTGAGCACATTTTTACCAAATGGACCATAAAAAACAACTTATTTTTAC TATTCAAGTGAGGGCATTTAACAATGTGTGACACAAGTGAAAGCATTTAGCAATGTGGAACATAAGTGAAGACATTTTTT ATCAAATAAGCCATAAAAAATTACATATTTTTACTACTCAATTTTTTTTTTCTAATGTATTTTCCAAAATTAAGTGAGGG CAAGTGCCCTCATACCCAACCACTTGCATCCGTCACTGGACAGTGCCTTCTTGAGACTCAGAAGGTTATTGGGTCATCAC AAATACAACTACAACAACAACAAGTTGTGTTGCCAGTGCCAGAAGTTGTTATAAGAATTGAACCATTAGAGCCAGAAGGT GTGGAGCGTAGCTATAGATGACCAAATTACCAATTAGAGCCATAATAACTGTGGTGTTTGATTTATTTATTGCTGAATTG ATGTTTATTACAACTGAAAATTTCAGTTGGCTAACCTTTTGACTCCACCAAATGTATGATAAACTAGTTCAAATTTAATG GACATATATATTGTTTTGCTCAAGACAGTTGCTAGATGGATTCAACTTTTCTG
CDS sequence (LotjaGi4g1v0407400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTAACCTCCCTATATAAACATACAGTCCCCTATGTAACCACCATCAACTCAAGCTCTAACAACAACAACAACAACAA CAACAACAACATGGATGTTTCAACTTCCTTCACTGCACACCTTATCCATGACCTTGCTGTGGAATACTCCCCCCATACAA GAAAGCTACTCCTTCAATTTCCACTTCACAATCAATTATCACCCACTTCCTCACCTTCCATTAAGAACTCAACAACAGAT TCATACTTCGGAAACCGCGAATTCGATTCAAACGCTATCATGATACTTGCTGTCCTGTTGTGTGCTCTGATCTGCTCACT TGGCTTAAACTCCATCATTAGGTGTGGCTTAAGATTCTCCAACATAGTCATCAACGATTACAGCGGAACCAACAACAATA GCCCTTCACCTAGATTGGCCAACAAAGGAATCAAAAAGAAAGCCCTTAAGAAATTCCCCATAGTGAACTACACACCAGAG CTGAAACTGAAACTCCCTGGTTTGGACACAGAGTGTGTGATTTGCCTCTCAGAGTTCACAGACGGAGAGAAGGTGCGTGT TTTGCCGAAATGCAACCATGGTTTTCACGTTCGTTGCATTGACCAGTGGCTGAGTTCACACTCTTCATGCCCCAAGTGCA GACTGTGCCAGTGA
Protein sequence (LotjaGi4g1v0407400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLTSLYKHTVPYVTTINSSSNNNNNNNNNNMDVSTSFTAHLIHDLAVEYSPHTRKLLLQFPLHNQLSPTSSPSIKNSTTD SYFGNREFDSNAIMILAVLLCALICSLGLNSIIRCGLRFSNIVINDYSGTNNNSPSPRLANKGIKKKALKKFPIVNYTPE LKLKLPGLDTECVICLSEFTDGEKVRVLPKCNHGFHVRCIDQWLSSHSSCPKCRLCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 91 | 91 | - | – | |
| PANTHER | 31 | 216 | 186 | 7.7E-86 | – | |
| PANTHER | 31 | 216 | 186 | 7.7E-86 | – | |
| TMHMM | 91 | 113 | 23 | - | – | |
| Phobius | 92 | 113 | 22 | - | – | |
| Gene3D | 113 | 216 | 104 | 1.2E-20 | ||
| Phobius | 114 | 217 | 104 | - | – | |
| SUPERFAMILY | 166 | 215 | 50 | 1.34E-20 | – | |
| CDD | 171 | 214 | 44 | 2.83238E-17 | – | |
| Pfam | 171 | 214 | 44 | 1.2E-14 | ||
| SMART | 172 | 213 | 42 | 8.9E-8 | ||
| ProSiteProfiles | 172 | 214 | 43 | 12.666 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0407400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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