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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0410500 |
| Transcript ID | LotjaGi4g1v0410500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit B; TAIR: AT2G13570.1 nuclear factor Y, subunit B7; Swiss-Prot: sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7; TrEMBL-Plants: tr|I1K511|I1K511_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78655077..78656390) extracted from Lotus japonicus Gifu genome v1.2.
TGCCTCTCTTTTAGTTTCTCTACACAATATGTAAATGTAATCAATATCCTAAAAGTTCATTAATTAATTCCACTACCCTC AATGGAAGATGAGAGTCACAATAATAACACTTTGCCAAATAATGGGTTTAGCTCAGGAAGCCCTGAAAGTCCTTGCTTAA AGCCAAACAACAATAATCACCATAACAAAGAACAGGACCGTTTTCTCCCTATAGCCAATGTTGGTAGAATCATGAAAAAA GTGATTCCTGCAAATGGGAAAATCTCAAAGGATGCTAAAGAGACAGTTCAAGAATGTGTGTCAGAGTTCATTAGCTTTGT CACAGGGGAAGCATCTGACAAGTGTCAAAGGGAAAAGAGGAAAACCATCAATGGTGATGATATCATATGGGCCATCACAA CCTTAGGATTTGATGATTATGTGGAGCCATTGAAAACTTACCTTGTGAAATACAGAGAGATTGAAGGAGAAAAGGTGAAC ACACCAAAGCAACAACAACAACAACGTTCTGATCAACAGAGGCTACTTCAACATCAACATAGCCAAGATGAAAATAATAT TAATAACCAACCATTCAACTGTGTATATACAACCTCAACAAATCTCATGTCTCATCATCAGCCTCCTTTTGTGGCGGCGG ATCAGCCATTTCCACTCCCTTTCTCAACAAATTCAATTCAAAAACAGTTAAGGCCACAGGACCAGATTGATTCAGTGGGG CATTGGTATGAGTAGCCAAGGTTTTAAATTGCGATTGCAGTCACGCGCAATTGTGAATAAATGGGGGGTGGTGCGATTGC AATTGCAGTCACGATACCGATGCAGGGACTTCAAAACCCGTTACATCGGTTGCGGACCGCAATTTAAAACCCTATGAGTA CCTAATACCATGCTTTATATATACATGATTATGCTTATAAGAATATATAATACTTAATGTAATGTCTATAGTACAAGAAT ATACAATGTGCATCTTTAGTCCTTAGAGTTTTTTTCTGTTTGTACTTGTCGTATAATAAAGATAACTACATATCTGGTTT AATCCATCCTCCACTAGTTATTGTACTTGCATCTTCTAATTGCTTTGGTAATATAGATTTGAGGAGAGAAGGATTGAGCC ATATGTTGGTATGAAAAATGGTTAAGTACCGAAGGTTTGTGTGTATATGCTATTCGAATTTCTTAGAGAATTTCTAAGAT GTGGACCTAAAGGAAAATGAAGTCTTGGTATGAATTCAATGTGGAATTGGTTTGGTTGGCTCTTACTCCAAATTAATGGT GTAATTTGTTATTTGAATAGGTATTCGAATTCCG
CDS sequence (LotjaGi4g1v0410500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGATGAGAGTCACAATAATAACACTTTGCCAAATAATGGGTTTAGCTCAGGAAGCCCTGAAAGTCCTTGCTTAAA GCCAAACAACAATAATCACCATAACAAAGAACAGGACCGTTTTCTCCCTATAGCCAATGTTGGTAGAATCATGAAAAAAG TGATTCCTGCAAATGGGAAAATCTCAAAGGATGCTAAAGAGACAGTTCAAGAATGTGTGTCAGAGTTCATTAGCTTTGTC ACAGGGGAAGCATCTGACAAGTGTCAAAGGGAAAAGAGGAAAACCATCAATGGTGATGATATCATATGGGCCATCACAAC CTTAGGATTTGATGATTATGTGGAGCCATTGAAAACTTACCTTGTGAAATACAGAGAGATTGAAGGAGAAAAGGTGAACA CACCAAAGCAACAACAACAACAACGTTCTGATCAACAGAGGCTACTTCAACATCAACATAGCCAAGATGAAAATAATATT AATAACCAACCATTCAACTGTGTATATACAACCTCAACAAATCTCATGTCTCATCATCAGCCTCCTTTTGTGGCGGCGGA TCAGCCATTTCCACTCCCTTTCTCAACAAATTCAATTCAAAAACAGTTAAGGCCACAGGACCAGATTGATTCAGTGGGGC ATTGGTATGAGTAG
Protein sequence (LotjaGi4g1v0410500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDESHNNNTLPNNGFSSGSPESPCLKPNNNNHHNKEQDRFLPIANVGRIMKKVIPANGKISKDAKETVQECVSEFISFV TGEASDKCQREKRKTINGDDIIWAITTLGFDDYVEPLKTYLVKYREIEGEKVNTPKQQQQQRSDQQRLLQHQHSQDENNI NNQPFNCVYTTSTNLMSHHQPPFVAADQPFPLPFSTNSIQKQLRPQDQIDSVGHWYE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| PANTHER | 3 | 213 | 211 | 1.5E-99 | – | |
| PANTHER | 3 | 213 | 211 | 1.5E-99 | – | |
| MobiDBLite | 7 | 31 | 25 | - | – | |
| Gene3D | 29 | 164 | 136 | 7.9E-47 | ||
| SUPERFAMILY | 38 | 155 | 118 | 3.11E-41 | ||
| Pfam | 41 | 105 | 65 | 1.1E-27 | ||
| PRINTS | 69 | 87 | 19 | 1.2E-19 | – | |
| ProSitePatterns | 72 | 88 | 17 | - | ||
| PRINTS | 88 | 106 | 19 | 1.2E-19 | – | |
| PRINTS | 107 | 125 | 19 | 1.2E-19 | – | |
| MobiDBLite | 131 | 164 | 34 | - | – | |
| MobiDBLite | 133 | 164 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. | ||
| Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi4g1v0410500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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