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LotjaGi4g1v0410700.1

Overview

Field Value
Gene ID LotjaGi4g1v0410700
Transcript ID LotjaGi4g1v0410700.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description E3 Ubiquitin ligase family protein; TAIR: AT5G63970.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3; TrEMBL-Plants: tr|A0A1J7HDM6|A0A1J7HDM6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78661418..78666362) extracted from Lotus japonicus Gifu genome v1.2.

TGAGCATTTTACCTTTTAAGCTGGCAAAAAGTTTAGTTTTTATGCATTGATAAATAAATTTAGTACTGGGATTTGTATAA TCATTGAACTTTGTTTTTAAGTATGGTCCTGTCTTCTTTTTTTAATCTTCAACTCCCCATTGCTTTTTGTTTAATTTGCA TTTTGATACAGGTGAAAGGAGGTTCTAGTTATGGGACATGGAGGGTCGAGACATCATCATCATCATCATCATCATGGTCA TTTATCCCAGCAACCTCCTTCATATGTTGGGAGTTCAGCCAATTCTAACTATCAATATCATAAACCATCTTCTGATGCTG GAACTTCAAAGAATACTAGACATCAACATAAGCAGCGCCCCAAGTATATAGCTGACAATTTCAGCTCATTGGATCAGGTT TTCACTGCTACTTTTGCTCATTGATTTAGAAAAATGGTCAGTGGTGATCTTAGCCTTAGCATATGATATTTTAAGGTTGT TTCTGCTCTGAGAGAAGCTGGTCTGGAATCTTCAAACTTAATACTCGGTATTGACTTCACCAAAAGCAATGAATGGACAG GTTGGTTCTTTTGAATATGAAATTATGTTGTACATACACATTAGTATGGAGAATGCAGAAAAGTCACACCTTCATAATTA TAGGCAAGCGTTCCTTCAATAACAAAAGCCTCCATCATATTGGTAGCACTCCTAATCCATATGAGCAAGCTATCTCTATC ATTGGCCGTACTCTCTCTTCGTTTGATGAAGATAATCTGATACCATGTTTTGGATTTGGTGATGGTGAGCTGCTTTTTCT GATTTAGCTATGAGGGACAAATGCTGTATGTTTTCTCTTCTATTGATACGATATCCTTTGCTTGTAGCATCTACACATGA TCAGAATGTCTTCAGCTTTTTTCCTGATCATCGCTGTTGTAATGGTTTCGAGGAAGCACTTGCACGCTACAGAGAGATTG TTCCATGCTTAAAATTGTCAGGTATGATAAAAATATTATCTTCCTTGCTAGATGAATTTATAATTTTGCTACAAGTATCT GTCTCAAATATATTCAATGACTTTGGACAATTACACTACTATATAGTGATGGGCTCAGAATAGTGGTATGATGCTGATTG GAAGCCTTATTGTACGAGATTGTATGATTGTTCTGTCAAGTTAGAACACCAATAAATGCTTACTTGTTGAATACATATTG ATTTGTGCTAGGAATTGCAATGCAGATTCAATCACAGCAAAACCTGTGAAAGGCTAGGGCTTCTTATGCAGTTCATACTC TATAATCACAATTATCAATGGGGAAAATTGTTGAGCAACTAAAAGTTATCAAGTGAATGTAGAGGGGACCTAGCCAAATA AGTTAATCCTAGTCCCCTCCGTCATGGGCCTACGGGCCACACCATTACCCACATGAATCAATTCTATGGATATTCAAACC TTACTAAACGGATCACAAAAATTTTTAGGTGGCCTCAAATGCATCCCTATATGCAAATTAAAAAACAAACATCTGACAAT AGTTATTAGATAATTCTAAAACTTATAACTCAATCAGACCTTTTCACTGGATATTTTCATAGTTTGTCATAAGAGTTTTG AGACAAATAGCTATCTCTTGTTGAAATTTGAAGTATCTTGGCAATTATTAAGTAAGTTGTTTGTGCAGTTTGGATAAAAT TGAATCTTGAATAGTGAATCTTACGAATCTTAACTAGGAAATCTTAGATTGCAGGCTATATATTTTAAACAGGTTTTAAT CTAGTTTCCTGGTAAAACATTCCTAAGTGGAGGGGTGGGAATTCAACTTTTCTGAAGGTGGGCTAACATTTCCAAAAACA TTATAAGCTTACCAAATAAATTTTATACATTCCCAGAATCATAATTACTAGGAAACATGATTCACAAGAATGAGAAAAGA CTGCATACGAACGCTGCCTTGTTAAAAAAGGAAGCAGTACATAGGGGAGATAGTGTAAATATCCAGGCAATGATATGAAG ATTTAATTATGAGTCCTTATCCACAGGTCCAACATCATTTGCCCCAGTAATCGACGCAGCAATTAACACTGTGGAAAGAA GCAACGGTCAATATCATGTTCTTGTGATTATTGCTGATGGGCAGGTTATACTTGTTTAATATTGACCTGATATATTTTCT TTTCATGTCATGATTTAATGGCCTTTTCTTAAATTTTCTTCTATTTCTGGAATATCTTGTTTTTTACAGCTTAGTCCGCA AGAACAAGCAACTGTTCATTCTATCACAGCTGCAAGGTAAAGCAATGTCTTCAGTAGTCTTCTGCTATTGTTTGTGGTGT CTGTCTTTGATGTGGAGCTATTCTGATTGTCAGTCACTATCCTCTCTCAATTGTTTTGGTTGGAGTCGGAGATGGACCAT GGAATGCAATGCATAATTTTGATGACAGCATGCCTGATCGCAAATTTGATAACTTCCAGGTACTTGACATTATGTTTTAT TGTGTGTATATACTTGTGATCACCCTGAGAAAAGACTGCTTAATCTCAAAAAGACTGGAAGATTTTCAGTATTCCATATT TAGAATACCACTCTTAACTCTGAATTATTTCTTATATTTGGAGTTTCTTATAGTTACTGTTATTGATTTGTTAGCAACAT TTTGTTCACTGTTGCCCCTCCAGTTTGTGAATTACACAAATATGATGTCTGAAAACAAAGAGACATCCAAGAAGGAAACC GCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTATCGCATAGTCCAAAATCTACGAGTCCCCAAGTAAGTTAT GAACTGAAGTATGTTAATTGTAAGTTGCGACTATAACCGCGTCTCATCTCGTGTTCTTTTGATGCAGAGGAAAATCAAAA AGGTATCAAGCCAGAAAGCCTTGCCCTCCCCCTAAGGAGGTAGATCATGGTAATGCCTTACCAAAAGTGCCACAAAAGAA GGTAATAGATGACAATGCATTACCAGAAGTTCCAGACAAAAAAAGCTTAGGATCAGCTGAGCCGACCGCTTCAGATGCTA CAGAATCAGTACGTTACTCTTGTACCCCCACCATATTGTCTTTCTCCTGCTTTAGATTCATTAAAAGATCACATTATGGT TACAATATTAAATCCCCTCTTGTTCTAGGTATGCCTTATTTGCCTCACCAATCCGAAGAACATGGCTTTTGGATGTGGTC ATTTAGTAAGTCTGATTGATGAACTTATTCTTGTTTAATGCTTATGTTAGTGTGCTAAGAGGTTATACTTATAGCTGTTT GTGTGAATGATAATCTATCTCAAAGGGAGTTTAGATTATAATTGTTGCACTGGAGGAACTTTCACTTCACTTCTGCTGTA CTAATGAAAGTTCAAAGGAAAATGAAAAAGATTGTCTTTCCTTTCTCCCAATCAAAATTCTGCAACATTTCAACATTGAC ATGTAATCTGATTTTTCATGTAAACATGCCATCTTCTAAAAATTAGCATGATAAAGCAACAAATTGGTAGGAAAAAGCAT TCTATTTTCGGCCATTCATATAGAATTGCTCTGCATAAAGGAACAATTGGCTATATAACATTATAACTTACATGTGAAAA TGTCTCTTATTTATTTCAACTTTTTTTCTTTAATGTAGACTTGCAAGGAGTGTGGTGTGACCTTATCTTCATGCCCTATG TGCCGGCAGCAAATTACAACTCGTCTCAAACTATACGCTTAAGTTGGAGGTTTCTTAGCATACACTGCTATTGCCAACTG ATAAGATTACTGCTATTGCCAACTGATAAGGAATGTCCCACCTGTAAAATTATAAGCATTTCAAATAAAAAAATGTTGTA CAAAAAGGTTGGAATGTTTACATTTAATGTTGATTGCATTTCTTTTTTTTTTTTCTTCATCGGAAGATGTTGATTGCATT TCAAGAAGCCATGTTACTCTTATTCACTTAATAATAAAAAATTAGGCTTAAATGCTCAATTGACCCATGTAATTGTAAAG AGAATCAACTCTGGTCCCTGTAAAGTTTTCGTATCAAATTGGATCCCTAAAAAAAAATTTAATCAAATTAAGGACAAATG TGTCGGCCGCTGTTAAGATTAAAACATAACTAAATACAACCCTAAAATTAAAATCTAATATCTTAACCTAGCAGCCCCAC CCCCTCTCTTCTTCCTCAACACCATAATGTTTAATCAGAATAATAGTTAAAATTTCCCAGTATGAACTGGTTTCAGAGAT GAAGTGAACTGAACTGGAAGAAGAAGTTGAAATTCACCTCCATATACATATTTCACAAATGCACCAAAATTATAGAAGCA GTTGGAGAATGGTAGAACAGGGGATCTGGGAAAATAAATAAAACAATTGACGAAATTCTAGTAAATAAATAAGAGATAAA GAGTAGAGTCAGCTGAATAAGTGAAGAGACTGTGGTTATCTTACATTGACACATGCGAGGATAGTAATAGATAGTTTACA TGATCAGTGGAAGCTTAAATAACATATATACACAAACATGTTACAAGATAGATTAGATAAGCACTACACTGAAAAATAGA TGAATATCATTTTTTGGTGGAGGAGGGTGAAGAATTGGCCTTGAAGATGTTCTTTAGAATGCCATTCTTCACTTTTGCTC GGGATGGAGGCTGGTTGTGGAATGAACCCGAAGGAGGAGGGAGTTGAACTTTGCCATCACTCATACTTGATGCTGCTCCT CCAATCTTCAAATTAAATCAAATGAAATGCAACTCCTTCCCAACTACAACATGTCATGTTTTATATAGGGTGTTAATTTA CCAATTGATTTGATTTACCTTCTGTTCTTTTTTAGTGTGAAAATATGATCTTTCTCATGGATAAGATCAAGAGAGGAATT GAATGAGATGGGTCCGGTCCTCATAAAGAAAACATCAACCTCTCATTATTTAGTGTATGTTTATT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0410700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCATAATTTTGATGACAGCATGCCTGATCGCAAATTTGATAACTTCCAGTTTGTGAATTACACAAATATGATGTCTGA AAACAAAGAGACATCCAAGAAGGAAACCGCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTATCGCATAGTCC AAAATCTACGAGTCCCCAAAGGAAAATCAAAAAGGTATCAAGCCAGAAAGCCTTGCCCTCCCCCTAAGGAGGTAGATCAT GGTAATGCCTTACCAAAAGTGCCACAAAAGAAGGTAATAGATGACAATGCATTACCAGAAGTTCCAGACAAAAAAAGCTT AGGATCAGCTGAGCCGACCGCTTCAGATGCTACAGAATCAGTATGCCTTATTTGCCTCACCAATCCGAAGAACATGGCTT TTGGATGTGGTCATTTAACTTGCAAGGAGTGTGGTGTGACCTTATCTTCATGCCCTATGTGCCGGCAGCAAATTACAACT CGTCTCAAACTATACGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0410700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MHNFDDSMPDRKFDNFQFVNYTNMMSENKETSKKETAFALAALMEIPIQYRIVQNLRVPKGKSKRYQARKPCPPPKEVDH GNALPKVPQKKVIDDNALPEVPDKKSLGSAEPTASDATESVCLICLTNPKNMAFGCGHLTCKECGVTLSSCPMCRQQITT RLKLYA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR45751
1 165 165 4.5E-59 –
PANTHER
PTHR45751:SF18
1 165 165 4.5E-59 –
Pfam
PF07002
5 56 52 2.6E-8
IPR010734
MobiDBLite
mobidb-lite
61 112 52 - –
Gene3D
G3DSA:3.30.40.10
100 166 67 1.3E-14
IPR013083
Pfam
PF13920
119 160 42 1.7E-10 –
SUPERFAMILY
SSF57850
121 161 41 1.1E-8 –
ProSiteProfiles
PS50089
122 155 34 10.955
IPR001841

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0410700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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