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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0411800 |
| Transcript ID | LotjaGi4g1v0411800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Regulator of chromosome condensation (RCC1) family protein; TAIR: AT5G63860.1 Regulator of chromosome condensation (RCC1) family protein; Swiss-Prot: sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8; TrEMBL-Plants: tr|G7LEZ7|G7LEZ7_MEDTR Chromosome condensation regulator RCC1 repeat protein; Found in the gene: LotjaGi4g1v0411800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78779872..78786459) extracted from Lotus japonicus Gifu genome v1.2.
TGAAGATTTTGCTACTATTAACTTTTGAAAAAAATTGTTTCTTAAATGTCTACTCTCTTGCCAACGTTAACCTTTCACCT ACTCATTTTGTTTGTTCTGAAGCTTCGTGAACAAACACTTTGACTCTCTGTACATTAATATTTCTAGTGTTTCAGTTCTG TCAATGTTTCTCTTCCTCATATAATTAAAACACGCACGATCGTCACCTTTTCCACCGAGAAATTAAGCAGGGGAAGTTTT CACAGAGACCATGATGATGGAAGATGATGAAGTGATGAGTGAAGTCACTGCTCCACCTCGCCGTGTTCTTCTCATATCCG CCGGAGCCAACCACACTGTCGCCCTTCTTAGTAAGCGCTTATCACTGCTCTGCCCCACTTCCCTTTTGTGTATGATCGTT TTGAGTTCTGATCCAAAGGGTGATGAAATTACATGGCAAGTTTTGAAATTTTGCATTTTTTCTACATGCTTTCTCTGTCT CCAGCTGAAGGACCCCACCCTAACTCATTGGTGTGTGATGTCTGTGGTCCCAAACAATGGAAAGCTTCAAATTCATGCAT GGTCTTTTGTTTCTTTCTTCCATTCTTTTGTTTGTGTTATGCTGGGCAGGCTGCCTGCACTTTACATGATCCTCCTGCGT TTGATATGACATTGACATCACATTTTGGGAACTTTTTCACTGTTACTGCTTACACTGTCATTGTATGGTTATATATTCCT ATTTTTTTTTAAAAAATCAAATTTAAATGGAAAATAACAGTATATATGTGAGAGAGGAGACCACCAAAGGGATACACCAA CCGGGTAGGTTCTAACTTATGTAGATGTCTCGGGTTGGAGTCTAATGTTAATGTAGCTGTGTTAAATGCCTGGTAGGAGA GCTTTGTCATCCACAATAGTCCTACCTAGCTCGAACATGATTGCCTCAGTGAATGATACCCATGGTTTAAACAAAAAAAT ATGTGAGAGATTAGCCCTGAATCTCCACTACCATAAACTGAATATTTGCTTCACATTGAGATTTGCATTTGAGTCTTCTT TATCAAAGCCAAGTCATTTGTTTTATAACTTCTTTGTAAGCTTTAAGAAGTACTTAATCAAATAAATGCAAAATTTTTTA CTTCAATTCTTCACCATTATCTTCCTTGCCTCCAAAAGTGGCAACTAGGTCCAAAATCATTGTCATTTACTTAATTTGTT TGACTTCTCTTGTAACTAGGTATGGTTTGATACTTTGATTTCTGTGATTCTTTTGTTTTTTACCCTTTAACTTTGATCCT TTGAAAGGTGGAAACTTTGTTTGCTCATGGGGGCGGGGAGAGGATGGACAGTTAGGCCATGGCGATACTGATGATCGACT CTTACCTACAAAAGTGAGTGCGTTGGATGGCCAAGACATTGTGTCTGTTACTTGTGGAGCTGATTTTACCGTGGCTCGTT CTGAATCCAGCGGAGGTTTATATAGCTGGGGATGGTCTGTTCTCCATCTTAATTATATTGTGGTTATTATTTTTCTCCAT AATTGGACACTTATTTGGAAGGTATTTTAGAATGGGACCTTACGATGGTACATAACAAGTTTACATATGTTCTAATGTGA TGTAGTATTGGATTCAGCTTCAAGTAAGTTATAGATACTTAATTAGTTACTAATACTATGCTTTTATCACTGATATCTAA CAAAGTGTAAGTTCATTACATGCTGAAGGAATTGGGTTGTTTCCTTGTAGAACAAGTTTGATTTGGACTCAATAATTTAT GCCTATGAATAGAAATAGTGGACATTTTATGTCATTATATGAAAACTCATCATGGCAGAAGATCTATCAACTGCTGGGCA TATCATGTTGTGTTGTTCTCTATCAACTGGCAATTCATAAAACATTTTTGTTCACATCAAACGGAGTCTTTTGAAATGTG GTTTATCTGTCATATTGGTGACTGTGATATTTTTAAGATTTCAAGCATACCATATTACGGTTTTCCAGGGGTGACTTTGG AAGGTTGGGTCATGGTGATAATATCGACTTGTTCATTCCTCATCCCATTAGAGCATTACAAGGTCTAACGATAAAGCAAA TTGCTTGTGGAGACAGTCATTGTTTGGCAGTTACTATGGATAACAAGGTGCTGAGGTTTGTAGTTTTCTACTGCCCAAAT TTTCATCTATCTTTAATTTGTTTGTTCTGACCTTTTCTTTTCATGTACTAATAGCTATTCCTCGGTCCATAAAGGTTGAG TTGCTTGATTAAATATAACATTGAAGCTAACAGTGCATCTCAGAGAGTCATTTTTTTCCATCACATGCACTAATCAGCTT TATCAAAAAAAAAATTGATAAGCCAAAAGTATATTGATATAAGCACAACGGGTGCTTAAAACCATATACAATTTATCTAT GCTTAAATTTGCATATTATTTGTTCACTGTTAACTTGATGGTGTTCTTCTTCTGTCATGATTAAAGCTGGGGGCGAAATC AAAATGGTGAGCTTGGACTTGGTACCACAGACGATTCTCTTGTGCCACAGAAAATTGGAACATTTGAGGTACGCATTTCA GAGCTGAACCTAGTTTTATCTGTAATGGATAAAGCTCTGTGACCTGGTTATCAGCACTCAATAAGATGGATTAGATAGTA TCCCCAGGTTAAACAATTAAAGACAAAAAGCAACTACCGTCAACAAAAAACAATCGCAGAAATCGCTTCCTTGTCAAGAA AGAGATAATGACTTGACTCGTAACATTATATAGAATAATTGGATACATATATATTAAATTTTCAACTTTTGCAGGGAGTA CCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGCAGCAATTACTGAAGACGGGGATGTGTATGGATGGGGTTGGGG ACGATATGGAAACTTGGGATTGGGAGACAGAAATGATCGCTTGATTCCTGAGAAAGTGTCTATTGATGTATTTCCTCAAA CTTGCACAAACTTACCTTCAGATTAGACTGTGATTATATCTATTGTAGTTTGGAAAAATATATCATGATTCATGAAATTA TAATTATTGTATGATTCCTGAAAAAGGGTAAACATGCTGTTAACTTAATATAGTCAGGACGAAGCATTTTAAGGTGTGAA CTTCTGATTTCATAACTGTCCATTTTGCAGGGTGTCAAGATAGTTATAGTTGCTTGTGGCTGGAGGCATACAGTATCTGT TTCATCTTCTGGCAGATTATACACAAATGGATGGGGCAAATATGGCCAGCTTGGACATGGAGATTTTGAGGATCATCTTG TGCCTCGGAGGGTTCAAGCGTTGAGCGATAAGTTCATTTCTCAGGTGGCCCTTTAAAAATTCATGCTGAGTTGGTGCCGG TTAACTTCATTTAGATGATGTCTTGTCATTTTTATTGTTTATGACTTTCTAGAAATTTAACGGTTGAACTTCTTCCCTTA CTCTTATTTAGTAGATTCTCTAATATTGCTTAAGTTCCATTCTGGAAGCTGGATTCTTTTCATCTGGAATGAGATAGACT GAACTACTTCTCTTTGAAGAGTTTGATCATGTATGTTGTCATTTGTCTCTGAACTTTTTATGCACTTTTTTCAGGTATCA GGTGGGTGGAGGCATAGCATGGCACTCACATCTAGTGGACAACTATTGGGCTGGGGTTGGAATAAGGTTGATAGTACTTT TGTTCGTCTCCTGTTTTCACGATATATTTTGTATGATAGCAACATGAAATACTTAAGATTGGTAAACTGTAAGCTGTTTC CCCTTTCATTGTAGTTTGGACAGATTGGAGTTGGTAACAATGTTGATTGCTCCTCTCCTGTGGAAGTGAAGTTTCCCTAT GATCAGGTACTTGAATTTGAAAATGAACACTCTTCTTCCCTTTTCTTTCCTTATAAAATTCTAAGTATAACAGTGACCAG CAATTTTTTTTTTATTTCTGCAAAAAAATTGTTTGGATTGGCAGAAAGTAGTTCAGATGTCATGTGGGTGGAGACACACG ATTGCTGTTTCGGAGCGTGGAAATGTATATTCTTGGGGAAGAGGCGCAAATGGACAACTTGGGCATGGAGACACCATAGA CCGGTACTTGCATGTGCAAGAAACCAAATGCTTTTCTAGAAAATCATGTCATTTTTAATTAGACATGTGACATTAAAAAA TATTTAATCTCGATCATCCATTTTTTGGGATCTTTAGGAATGTTCCAATGATTATTAAGGCCTTCAGTGTTGATGGATCT AGTGGGCAGCATATAGAATCTTCAAATCATTCTTCATCAGGTGCTCTGGCAAGCTCTTTTGTTATGTGTTCCTTTCTTTA TCCATTACTGATGTATACTACTTGACATTGGAATTTATAATTATTGTTGTTCCCTGAATAAATTAGCATGATTCTGGATT TGTTTTTCTTAAGCAGGGAAATCCACAGCCTCGCTATCAGAGAGATATGCAGTTGTTCCAAATGAATCTGTAAGTGTCTT GTTTTAGTATACATGAACATTATTTACAATTATTCTGGCCATTGATCTTTGCTTAGTTGTGAAACCTAAAAAGGAAAGGA TATTGTAAGGCTGTGATAATTATATTAAGTTTACAAGCTCATTTAACTTGGTCTGAGAACTAGATATTCACATGAAAACA GCTTTTCAGCAGAAAGTTCACAGCATTTTGAATATGAACTTTCCGAAACATAAAAATGAGCTGATACAATCGCGCAATTT GGAATTATTTGGCAGGCCTCTGGATCATTTGCTACTACTTCAGACAGGGAGGACAAGTTTGATGTCAGTGTCCCATAAAG TCATGTCAACTGATACCCAATAATTAATCAGTTCAAGAGAATGGTGTCAATACCCAGTCTGAAAGACCAAAACACACAAG GAGATAGGGATAAGGAGTATGTGCATTAGTGATAATGCGCTTTAGTGATAATGCGTGAGAGGCGGTTATGTTAGTGTCAT TTATGAAGTGGGTTTTGCCTCTCCCAACAAATTATTTTTTGTAAACATGGTCAAGGATCAAACCCTTGTCTAGCTATCTA CCAAGTGTGTCAGGATTTGTTGGTAGTTATGAATTAGTATGTTGGTTGTATGATCTGTGAAAGTTTGGCTTGAGATATTC TCTTCAGGCAACATATGTAGTTGAAATTAATATCGATATTTGTAATAAATGTACAGTATCATTCAGTAATTTCTTTCTTC TATTGAGGTTTTCCCTTCCCTCGTATCTGTCCTTAACTCCTTATAAATATCAATGCTTGTGATAACTTGTAATCTAACAG CACGTCTAAGAGATGTTGACTTCTGGTTTTATCAGATATAATTCCTATACACTTTCTTCTAAACTAAATGAATTCTACAA ATTGCACGCTCCAGATGTTCTGATATTAATTTCCTCCTACTCCAATTGCAGCACTCCAATCTAACCGTGAAGCGACAAAG AGAAGTCTCCTATGCCGGGAACAAATCCAAAGCTGCTAAGCTCGTGCCAGAATCTGACACTCAACCTTCAGCAACTAATG AGGTTATCCCGGTCCGTATTAGCAAGGTTCCTAACAAAAATGGTGAAGGAGCAAGCAACAAGACTAGCTATGAGCTCTAC CTCCGCGAGCTAAAAGACCGAAAGGAAATCGGCTTCACACGAATAGGCGCATCTAAGAAGTTAACTTCTCGATCATTCGA GATTGATCTCGATTACTTCAAAGCTGCAATCACTGATGTGATGAAGCATATCTTACTGATACGCTGTCACTCCCAAGGGT CTATGCGTCCCTCCGAGATCACCTCGGTCATCAATTCTGCAGTGCCTTTAACCGTTGACATATGCATGGCAGCTGTTTAT GCCAAGTTGCGTAACATTAACAAGTCTTGTGGCAAGCATCCTGCTCGTTACGCTTCTTCTCCAACTTACTCGAGGGACAT TGAACTGCCGCTTGATAAGTGTCATATTCACCATGTTTTACATTATATTTTAGGCACTTATCTATTGTAATAATGAGAAA TTTCTTCTAAGTAACTCTCTTTTAAGTTGATTATGTAGAAAATGATTCCAATCTCAATTTGAGTTGTAGGTTGAAGAATA ATTAAGAAAGTGCATGATTTGGATGAAAGAAAGCTTGTAAATGAAGAATCCCACTCAATAACTTTGAAAAAACACAAGAA ATCAACCTTGTTCCAATCATGCTTAGCATGTGTTCCAGGGTGCTTAGCATCATCTGGCAATGGAGACTCCTTCAGCATGA AGAAACAGGGTGCTAAGCGTCTAAAGTGGAGTGCTTAGCATCATCTGGCGGTGGAGAATCCTTCAGCTTGGAGAAACAGG GTGCTAAGCACCTAAAGTGGAGTGCTAAGCACCCTGTAACAGATCTGCAATGCTATAAAACTAAAAGTTCAGCACAGAAA TAAAGGGAACGAAAAGGAGGACATAAAACTCGAGAAAAGGAAGAGGGATTGAGAGATTGGGAGCTTTGTTACCTTCCGTC GAGCTGGGAACACGCCGACGACGGCACGGATCATCCATTTCTTCTCTTTAACTCTTGTAAGCGTGAAAGCTTCCATGAAA ATGGATAGCTAAACCCTTTTTGTGTTGG
CDS sequence (LotjaGi4g1v0411800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGATGGAAGATGATGAAGTGATGAGTGAAGTCACTGCTCCACCTCGCCGTGTTCTTCTCATATCCGCCGGAGCCAA CCACACTGTCGCCCTTCTTAGTGGAAACTTTGTTTGCTCATGGGGGCGGGGAGAGGATGGACAGTTAGGCCATGGCGATA CTGATGATCGACTCTTACCTACAAAAGTGAGTGCGTTGGATGGCCAAGACATTGTGTCTGTTACTTGTGGAGCTGATTTT ACCGTGGCTCGTTCTGAATCCAGCGGAGGTTTATATAGCTGGGGATGGGGTGACTTTGGAAGGTTGGGTCATGGTGATAA TATCGACTTGTTCATTCCTCATCCCATTAGAGCATTACAAGGTCTAACGATAAAGCAAATTGCTTGTGGAGACAGTCATT GTTTGGCAGTTACTATGGATAACAAGGTGCTGAGCTGGGGGCGAAATCAAAATGGTGAGCTTGGACTTGGTACCACAGAC GATTCTCTTGTGCCACAGAAAATTGGAACATTTGAGGGAGTACCTATCAAAATGGTTGCTGCTGGTGCTGAACATAGTGC AGCAATTACTGAAGACGGGGATGTGTATGGATGGGGTTGGGGACGATATGGAAACTTGGGATTGGGAGACAGAAATGATC GCTTGATTCCTGAGAAAGTGTCTATTGATGGTGTCAAGATAGTTATAGTTGCTTGTGGCTGGAGGCATACAGTATCTGTT TCATCTTCTGGCAGATTATACACAAATGGATGGGGCAAATATGGCCAGCTTGGACATGGAGATTTTGAGGATCATCTTGT GCCTCGGAGGGTTCAAGCGTTGAGCGATAAGTTCATTTCTCAGGTATCAGGTGGGTGGAGGCATAGCATGGCACTCACAT CTAGTGGACAACTATTGGGCTGGGGTTGGAATAAGTTTGGACAGATTGGAGTTGGTAACAATGTTGATTGCTCCTCTCCT GTGGAAGTGAAGTTTCCCTATGATCAGAAAGTAGTTCAGATGTCATGTGGGTGGAGACACACGATTGCTGTTTCGGAGCG TGGAAATGTATATTCTTGGGGAAGAGGCGCAAATGGACAACTTGGGCATGGAGACACCATAGACCGGAATGTTCCAATGA TTATTAAGGCCTTCAGTGTTGATGGATCTAGTGGGCAGCATATAGAATCTTCAAATCATTCTTCATCAGGGAAATCCACA GCCTCGCTATCAGAGAGATATGCAGTTGTTCCAAATGAATCTGCCTCTGGATCATTTGCTACTACTTCAGACAGGGAGGA CAAGTTTGATGTCAGTGTCCCATAA
Protein sequence (LotjaGi4g1v0411800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMMEDDEVMSEVTAPPRRVLLISAGANHTVALLSGNFVCSWGRGEDGQLGHGDTDDRLLPTKVSALDGQDIVSVTCGADF TVARSESSGGLYSWGWGDFGRLGHGDNIDLFIPHPIRALQGLTIKQIACGDSHCLAVTMDNKVLSWGRNQNGELGLGTTD DSLVPQKIGTFEGVPIKMVAAGAEHSAAITEDGDVYGWGWGRYGNLGLGDRNDRLIPEKVSIDGVKIVIVACGWRHTVSV SSSGRLYTNGWGKYGQLGHGDFEDHLVPRRVQALSDKFISQVSGGWRHSMALTSSGQLLGWGWNKFGQIGVGNNVDCSSP VEVKFPYDQKVVQMSCGWRHTIAVSERGNVYSWGRGANGQLGHGDTIDRNVPMIIKAFSVDGSSGQHIESSNHSSSGKST ASLSERYAVVPNESASGSFATTSDREDKFDVSVP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 434 | 429 | 8.4E-264 | – | |
| PANTHER | 6 | 434 | 429 | 8.4E-264 | – | |
| Gene3D | 15 | 390 | 376 | 4.5E-159 | ||
| ProSitePatterns | 22 | 32 | 11 | - | ||
| ProSiteProfiles | 36 | 87 | 52 | 14.484 | ||
| PRINTS | 37 | 53 | 17 | 8.9E-26 | ||
| Pfam | 38 | 83 | 46 | 4.4E-15 | ||
| Pfam | 88 | 137 | 50 | 3.6E-14 | ||
| ProSiteProfiles | 89 | 140 | 52 | 15.81 | ||
| PRINTS | 91 | 107 | 17 | 8.9E-26 | ||
| SUPERFAMILY | 137 | 379 | 243 | 6.54E-82 | ||
| Pfam | 140 | 189 | 50 | 1.4E-14 | ||
| PRINTS | 141 | 157 | 17 | 8.9E-26 | ||
| ProSiteProfiles | 141 | 192 | 52 | 16.554 | ||
| ProSitePatterns | 179 | 189 | 11 | - | ||
| PRINTS | 179 | 195 | 17 | 8.9E-26 | ||
| Pfam | 192 | 238 | 47 | 6.8E-14 | ||
| ProSiteProfiles | 193 | 243 | 51 | 15.67 | ||
| PRINTS | 195 | 209 | 15 | 8.9E-26 | ||
| ProSitePatterns | 230 | 240 | 11 | - | ||
| Pfam | 243 | 292 | 50 | 1.8E-14 | ||
| ProSiteProfiles | 244 | 295 | 52 | 14.484 | ||
| ProSitePatterns | 282 | 292 | 11 | - | ||
| PRINTS | 285 | 303 | 19 | 8.9E-26 | ||
| Pfam | 295 | 344 | 50 | 5.4E-14 | ||
| ProSiteProfiles | 296 | 347 | 52 | 14.645 | ||
| ProSitePatterns | 334 | 344 | 11 | - | ||
| PRINTS | 343 | 364 | 22 | 8.9E-26 | ||
| Pfam | 348 | 379 | 32 | 3.0E-9 | ||
| ProSiteProfiles | 348 | 406 | 59 | 11.73 | ||
| MobiDBLite | 385 | 422 | 38 | - | – | |
| MobiDBLite | 385 | 434 | 50 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0411800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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