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LotjaGi4g1v0417900.1

Overview

Field Value
Gene ID LotjaGi4g1v0417900
Transcript ID LotjaGi4g1v0417900.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing family protein; TAIR: AT3G09040.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial; TrEMBL-Plants: tr|I1LNN3|I1LNN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0417900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:79329851..79336160) extracted from Lotus japonicus Gifu genome v1.2.

AAACAAGTCAGTGTTCATAAAAAAAGAATCGCAGTGGTGGTGTTGAAGGTGAAGGTTCAGAGCTTGTGGTAACTGTCGTT GAAGCCGCCGGAGTCTGGAGAAGGTGGCGGCGAGTTAGGAGCACCGTGCGTCGGTTTGGATGGTGAGGGTCTGAGGGGGC GGAGAATGTGCTCGAGGAGGCTAATTTTCTGATGAGTTCACTTTCTGCAAAACTTGAGAATGTTGAGTTTTGGAAGGTTA GTTCATTGTTGCGTGATTCAGGGAAATGCAGTTGTGAAATGCAGCAACTCTCTTATGAGGTATCTGAGTTCCGCTTGCGC CGCCGCATCCATTCAAGCTGGTTTGCCAGGGGAGGCACACCACCTGTTTGACAAAATGCCGGTTACTTCTTCTTTTGACC AAGTGGCACTCTTGAATTCCTACATGGTTTCCGGAAAGTTGGACGATGCGTGTCAGTTGTTCCGACAGATGCGGACACGG AATGTTGTGGGTTGGAATGTCATGATTTCTGGTCATGCTAAGAGAGGCCATTATTACCAGGCTCTTGAATTCTATCAAGA AATGAGGAAGAATGGTATAAAATCCTCGAGGTCCACACTTGCAAGTGTTTTAAGTGTGGTTGCTAGCTTAGCAGCATTGG ATCATGGCTTGCTAGTTCATTCAGAAGCTATCAAACTGGGTTTTGAGTCCAATATCTATGTGGGGAGTTCTCTGATCAAT ATGTATGGCAAGTGTGAAATGCTGGATGCTGCAAAGAAAGTATTTGAAGCTCTATCTAACAAAAATATGGTCGTGTGGAA TACCATGCTAGGGGTTTATGCGCAGAATGGTTATTTGAGTAATGCTCTGGACTTTTTCTTTGATATGATGGTACGCGGTG TTGACCCGGATGAATTTACCTACACTAGCATTTTGAGTTGTTGTGCTTGTTTTGAGTTCCTAGGAATCGGTTCACAGTTG CATGCAACTATTATCAAGAAAAAATTTACAACCAATATATTTGTGAACAATGCATTGGTAGATATGTATGCCAAGGCTGG GGCTTTGAAGGAAGCCAGGAAACTGTTTGAGAACATGGAGGATCGAGATAACATTTCCTGGAATGCAATAATTGTGGGAT ACGTGCAAGAAGAAGAGGAGACCGATGCTTTCAACATGTTTCGGAGAATGAATTTACAGGGTATGATACCTGATGAGGTA TCTTTAGCTAGTATACTCAGTGCTTGTGGAAATATCAAGGGACTAGAGGCAGGACTGCAGTTCCATTGCCTATCAATTAA GTTGGGTTTAGAAACTAACCTTTTTTCTGGAAGTTCTCTTATTGACATGTATTCCAAGTGCAGGGCCATTGAAGATGCAC GTAAAATTTATTCTAGCATGCCCCAGCGGAGTGTGGTGTCCATGAATGCTCTGATTGCAGGATATGCTCTGAGAAATACT AAAGAAGGTTTTAATCTTCTTCATGAGATGCAGATATTGGGGTTGAAGCCATCTGAAATTACATTTGCAGCCCTCTTAGA TGATTGTAAAGGGCCTCCTATGGCAAGTTTAGGCATGCAGATCCACTGTACCATAGTAAAGAGAGGGCTTTTATGTGGTA GTGAATTCTTAGGTACCTCTTTATTGGGAATGTATATGGACTCACAAAGGATTGCAGATGGGAAAACTCTTTTCTCAGAG TTTTCTGACCTTAGAAGTAAAGTAATGTGGACGGCTCTAATTTCAGGACATACCCAAAATGAATGCAGTGATGAAGCCTT AAACTTGTATAGAGAAATGCGTAACAACAACATCTTTCCTGATCAAGCAACATTTGTTACTGTTCTTCGAGCTTGTGCGC TCTTATCCTCATTGCAAGATGGTAAAGAGATACATTCTCTAACTTTCCATACTGGTTTTAACTTAGATGAGTTAACCAGC AGTGCCCTTGTAGATATGTATGCTAAATGTGGGGATGTAAAAGGTGCTGTCAAGGTTTTTGAAGAATTGACTATTAAAAA GGATGTGATTTCTTGGAACTCAATGATTGTTGGATATGCGAAAAATGGTTATGCTGAAAGTGCCATGAAGGTCTTCGATG AGATGACTCAATCACGTGTTACACCAGATGATGTCACATTCCTTGGAGTGCTTACTGCCTGTAGCCATGCAGGGTGGGTT ACTGAGGGTCGTCAAATTTTCGATGTCATGGTAAACTATTATGGCATTGTGCCCAGAGTAGATCACTATGCTTGCATGGT TGATCTTCTTGGTCGGTGGGGTTTTCTCAAAGAAGCTGAAGAGTTCATTGAAAAACTAGATGTTGAACCTGATGCTATGA TTTGGGCCAATTTATTGGGTGCTTGCAGAATACACGGGGATGAAAAAAGAGGACAGAGGGCAGCTAAGTTACTTATAAAG TTAGAACCCCAAAACTCTTCTCCATATGTGCTGCTTTCTAATTTGCATGCTGCATCAGGACATTGGGATGAAGCTAGATC TTTGAGGAGAACAATGATGCAGAAAGAAATCCAAAAGATGCCTGGGTGTAGCTGGATTGTAGTGGGGCAAAAGACAAACT CGTTTGTTGCCAGTGATACATCACATCCTTGTTCTGATGAAATATTACATATTTTGAAGCATTTGACAGCACTAATGAAA GACAATAGATACCAAGAATATGGAATTTGCCAGGTTGGTCAAATTTAGATATTCAAAATAATGGGAAGTCAAGCATTCAA TTCAAATTTGCTTCCGGACAGAAAAGAAACTTACATATACTGTTCACCAGGAAAAGGAATGCATAAAAGAGATAAAACAT GGGAACAACACCGACTGCTTGGTTGTTGTTATATGTTCCTTAGATAGTACAGGGTAGGGATGGACCCATGTGTAATTTTA GTGGTGATGCTCCGCATTTTCACATTGGAATTCTTCTTACCCAGTCATCGACTGCTTGGTCTACAAGCTTTAGGACGCAG CTCCATGCAATGGGTTTAACTGATGTGCCGAAAGTGGATACTGATATTAGTATTGCCGCAACTCTAATGGATATGTATCA AATTATGGGAGCCCAGCAGTATGGTGGTTCTGCAGCTCAGAACAGTGTATGGCTTATTTGTGTGACTCTAAATTCATGTT ATCTGTTGGACAAATATCTAATGTGCTTATTTGCGTCTTCTGCTGCTGTTATGATATATGTTTTTTTGTGAATGGCAGGT GTTTCCAGAGAGGCAGGGACAATGGAAAGCAACAACACAAATAAGAGAGTTTTTGAGATCCATATAACGATACTATAGCA ATGCTTACACAGATGGTAAAAACCAAGATGCAATAAATCTAAATTATTCCTTCCTCTTGTTTCTACTTATTTTATCTTAA TAATTTTTGTTTCCTTCCCTAGAAGGAATTCTTGGCTCATCTTCAATAATGTTAGATATTGAGTTTCTAACTTTCTAATG TTTAAATACTCTGTCCCCGGTAAATCTTTTCTTGAACAAGTACGTTGTTCTACTGACAGATTTTTAGGTTACTTCCAAGT TCCAACCACAGGCAGGAAGGGAAACCTGCTCTCTGGGAGCTTGATTCAGATTATTATCTCCATGTATCCACTATCCGGGA TTGGGGATGATCTAATTCCTGAGAAGTGGTAAGTCCTTCTTGTTACTTAATGACTGGTATTTAAATCTATCACTGACATG CTTCTATGATATGTTAAGTTCAGCAGTGCTATTCTCAGTCTTTATATTTACATATATTGTTAATTTACTTTCTCACTCTT CATTTTCTTTCTGAACTTTGCAGTTCTAAACCAAAGGTTTGTATCTGAAACTTGCATTATCCTTGCAAGACTTTGATGCA CCCACTATTTTGTTCTTGGATATTCTGTGTCCCATTCAGTCTCTTTTTAAAATATAGTTTATTAATGGTCCATTTTATAC CTAGATGCATATTGTATGAAACCTCTTAAATTTCTTCGTTGTTTGAATTTTAAGTTGGTCAAATATCAAACCAATCCATC ACACCTTACAAGTTACAACTAATTAAATGGCATTTTTGTTGCGTTGATTTTTTTTGTTATAAACCACATCTATCCTCCGA TGAGGCAATCATGTTTGAGCTCAGTATGACGATTGTGGATGGAAAAGTTCTCTTTATCAAGTATTTAACGCGCATTTTCA GTGAAACTCAAACTCGAAACCACTGCTCAAACAAAAGCAATCTCAGCTAGATTATCTACCCATTTGGTGACTTTATTTTT CTTTGACTTTGACTGGGATTTATAAGGAAAAAAAATACAAATAAGGCTTTGAAAGTAATAGTTTTAAATAGGATTTTGAT TCATTCACACCTAACTCTTTTTTCCATAAGACACGAACTTTCTCTTCCTATTTCTCTTGTTTTTTTTTTATCAGATCACT TATCATATCTCTCATTTCTCTATTTTTTTTCTTTATCTCTCTAGGTGGAGGTGGGACTAAAGTGTAAATAAAGACTTATT CTTATAAATATTTTGTATGATTTGTTTTTCTCGCATGATTAATCCGATGACATCCATGTAATATGAGAAACTTTGAAGTT TTGGCCTGAGTCATATTTAGATAATAGGTGTTTTGTAAAAATGATGACTGATGAAGTCGAACGACTTTTACAAAATATTA GTATTATGAATGAGACCAAAACATTTGTTAGTTTGTTACATAAATACTAAATGTTCTGATCAGGCATGCATCATGATGCT TATATAGCAACATCAAAGATTGTATTAATGTTTACCAATTCAGCTTCTTAAATAGTAGTACTCCTAAGAAAGACCTTTCA TGATTTCATACGTATTTTAATATACACAAGCAACCTTTTCTGTGCCAGTAATTGTTTATTGTTCAAATCCACAACCAGCA GGTGATTCCTTTCACATCTACAGTATAATCTTTTCATACTATAAATATAAGATATAAGATCCAGCAAGGTTGCAACAAAA GACATGGCTTCTCATAGGATTGGGATTATCTTTCTTGTCTTCGTCTGTGGTATGCATATTGAGCTCAGCTTATCCAGAAA ATAAGTTCTTCTTTTCTATTTTTTCTTTCCATGATATTATAGTCATGGAACAATTGGTTCCTTTACGAGGAAAACTAGTC GCTGATCAGATTACTCATTCGAGTCATATTTTTTACTTAGTTCCAAAAATTAAAAAAGAATTGAACAAATTAACCATTTT AGTCTGACCCTTTTGTTCATGATGCAGGTGCAATTCTTTTGGAAGGCAATCTGAAAAGGGTTGATGCTAAAATTTGCCCA CAAATATGCTATGGTGCAGCATACATGACTTGTCCATCTTCAGATAATCAACTCAGTCCAACATGCAACTGCTGCCTTGC ATCAAAGGGTTGTACACTTTACAATGCAGATGGAACTCCTATTTGCACTGCTAGCTGAAGCAATGAATGTTTGTTCACAT GCTCAAAGTTTACTTTATGAATTTCAATAAACTGTAATCCAATAAATTCAACAGACTTCTCTGTTGAATTGTAATCCAAT AAATGCAACATAGACTTCGCTGGCTCCCTTGGAAACAGTTTGCATGTTTTGATATTCATTATGTGAGTCATAATAGATTT TGGCTAAGACACTTAATGCATGTATGGATAGATGTTTATCAAAATTAAAAGAAAGTACAATTCAAAAATAAAGGGGGTGT GTCGGTTTTTTTTCTTCTTTTTTCCAGGTAAGTAAAATCAATCTATTTTTAATTTGAAAGAAAATACAATTCAAAAATCT TTTTAATTTTCAAGATTCATACAACCCTCTGTTTGGATGCAGAGGTGAAAATAAGAGGAAGGAATATAAAAGGAATGAAT ATAAGAGGAAATAATATAGAGGAAAAGTGAAGTGATTTTGAAGTTGTTTGGATTGAGAGAAAAGGAATGGAAAATGAAAG GAAAGTGAAAGTAATGTTTATATGATTACTAATTTATCCTTTACTTTTTTTCTTTTCTTGCAAAATAGTGTGGTCATAGT GGACTTTTCTTACAAATCTCACACCAGCTTCATTTTCACGCCAATATTGGGAAGAAAACTGACAGCTACTGTTGCAGTAC GACTTTCATGCCAATTTCCTTTCCATGCTCGTGCCAAACACATCAGACCCCAATATTCCTCTCATTTTACATCCAATTGT TTTCCTTTCCATTGAAAATCACTCGAAACAAACACACTGTAAGGAAAACATCACATTGCAGCAGCCATCGTTTCAAATGC ACCTTCAATTGCCATATTCGTCATCGTCCCTATAATGATCTCTTCCTCTGGTTCTCTCTTGCGATTTCTC 

CDS sequence (LotjaGi4g1v0417900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGAGTTTTGGAAGGTTAGTTCATTGTTGCGTGATTCAGGGAAATGCAGTTGTGAAATGCAGCAACTCTCTTATGAG GTATCTGAGTTCCGCTTGCGCCGCCGCATCCATTCAAGCTGGTTTGCCAGGGGAGGCACACCACCTGTTTGACAAAATGC CGGTTACTTCTTCTTTTGACCAAGTGGCACTCTTGAATTCCTACATGGTTTCCGGAAAGTTGGACGATGCGTGTCAGTTG TTCCGACAGATGCGGACACGGAATGTTGTGGGTTGGAATGTCATGATTTCTGGTCATGCTAAGAGAGGCCATTATTACCA GGCTCTTGAATTCTATCAAGAAATGAGGAAGAATGGTATAAAATCCTCGAGGTCCACACTTGCAAGTGTTTTAAGTGTGG TTGCTAGCTTAGCAGCATTGGATCATGGCTTGCTAGTTCATTCAGAAGCTATCAAACTGGGTTTTGAGTCCAATATCTAT GTGGGGAGTTCTCTGATCAATATGTATGGCAAGTGTGAAATGCTGGATGCTGCAAAGAAAGTATTTGAAGCTCTATCTAA CAAAAATATGGTCGTGTGGAATACCATGCTAGGGGTTTATGCGCAGAATGGTTATTTGAGTAATGCTCTGGACTTTTTCT TTGATATGATGGTACGCGGTGTTGACCCGGATGAATTTACCTACACTAGCATTTTGAGTTGTTGTGCTTGTTTTGAGTTC CTAGGAATCGGTTCACAGTTGCATGCAACTATTATCAAGAAAAAATTTACAACCAATATATTTGTGAACAATGCATTGGT AGATATGTATGCCAAGGCTGGGGCTTTGAAGGAAGCCAGGAAACTGTTTGAGAACATGGAGGATCGAGATAACATTTCCT GGAATGCAATAATTGTGGGATACGTGCAAGAAGAAGAGGAGACCGATGCTTTCAACATGTTTCGGAGAATGAATTTACAG GGTATGATACCTGATGAGGTATCTTTAGCTAGTATACTCAGTGCTTGTGGAAATATCAAGGGACTAGAGGCAGGACTGCA GTTCCATTGCCTATCAATTAAGTTGGGTTTAGAAACTAACCTTTTTTCTGGAAGTTCTCTTATTGACATGTATTCCAAGT GCAGGGCCATTGAAGATGCACGTAAAATTTATTCTAGCATGCCCCAGCGGAGTGTGGTGTCCATGAATGCTCTGATTGCA GGATATGCTCTGAGAAATACTAAAGAAGGTTTTAATCTTCTTCATGAGATGCAGATATTGGGGTTGAAGCCATCTGAAAT TACATTTGCAGCCCTCTTAGATGATTGTAAAGGGCCTCCTATGGCAAGTTTAGGCATGCAGATCCACTGTACCATAGTAA AGAGAGGGCTTTTATGTGGTAGTGAATTCTTAGGTACCTCTTTATTGGGAATGTATATGGACTCACAAAGGATTGCAGAT GGGAAAACTCTTTTCTCAGAGTTTTCTGACCTTAGAAGTAAAGTAATGTGGACGGCTCTAATTTCAGGACATACCCAAAA TGAATGCAGTGATGAAGCCTTAAACTTGTATAGAGAAATGCGTAACAACAACATCTTTCCTGATCAAGCAACATTTGTTA CTGTTCTTCGAGCTTGTGCGCTCTTATCCTCATTGCAAGATGGTAAAGAGATACATTCTCTAACTTTCCATACTGGTTTT AACTTAGATGAGTTAACCAGCAGTGCCCTTGTAGATATGTATGCTAAATGTGGGGATGTAAAAGGTGCTGTCAAGGTTTT TGAAGAATTGACTATTAAAAAGGATGTGATTTCTTGGAACTCAATGATTGTTGGATATGCGAAAAATGGTTATGCTGAAA GTGCCATGAAGGTCTTCGATGAGATGACTCAATCACGTGTTACACCAGATGATGTCACATTCCTTGGAGTGCTTACTGCC TGTAGCCATGCAGGGTGGGTTACTGAGGGTCGTCAAATTTTCGATGTCATGGTAAACTATTATGGCATTGTGCCCAGAGT AGATCACTATGCTTGCATGGTTGATCTTCTTGGTCGGTGGGGTTTTCTCAAAGAAGCTGAAGAGTTCATTGAAAAACTAG ATGTTGAACCTGATGCTATGATTTGGGCCAATTTATTGGGTGCTTGCAGAATACACGGGGATGAAAAAAGAGGACAGAGG GCAGCTAAGTTACTTATAAAGTTAGAACCCCAAAACTCTTCTCCATATGTGCTGCTTTCTAATTTGCATGCTGCATCAGG ACATTGGGATGAAGCTAGATCTTTGAGGAGAACAATGATGCAGAAAGAAATCCAAAAGATGCCTGGGTGTAGCTGGATTG TAGTGGGGCAAAAGACAAACTCGTTTGTTGCCAGTGATACATCACATCCTTGTTCTGATGAAATATTACATATTTTGAAG CATTTGACAGCACTAATGAAAGACAATAGATACCAAGAATATGGAATTTGCCAGGTTGGTCAAATTTAG 

Protein sequence (LotjaGi4g1v0417900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLSFGRLVHCCVIQGNAVVKCSNSLMRYLSSACAAASIQAGLPGEAHHLFDKMPVTSSFDQVALLNSYMVSGKLDDACQL FRQMRTRNVVGWNVMISGHAKRGHYYQALEFYQEMRKNGIKSSRSTLASVLSVVASLAALDHGLLVHSEAIKLGFESNIY VGSSLINMYGKCEMLDAAKKVFEALSNKNMVVWNTMLGVYAQNGYLSNALDFFFDMMVRGVDPDEFTYTSILSCCACFEF LGIGSQLHATIIKKKFTTNIFVNNALVDMYAKAGALKEARKLFENMEDRDNISWNAIIVGYVQEEEETDAFNMFRRMNLQ GMIPDEVSLASILSACGNIKGLEAGLQFHCLSIKLGLETNLFSGSSLIDMYSKCRAIEDARKIYSSMPQRSVVSMNALIA GYALRNTKEGFNLLHEMQILGLKPSEITFAALLDDCKGPPMASLGMQIHCTIVKRGLLCGSEFLGTSLLGMYMDSQRIAD GKTLFSEFSDLRSKVMWTALISGHTQNECSDEALNLYREMRNNNIFPDQATFVTVLRACALLSSLQDGKEIHSLTFHTGF NLDELTSSALVDMYAKCGDVKGAVKVFEELTIKKDVISWNSMIVGYAKNGYAESAMKVFDEMTQSRVTPDDVTFLGVLTA CSHAGWVTEGRQIFDVMVNYYGIVPRVDHYACMVDLLGRWGFLKEAEEFIEKLDVEPDAMIWANLLGACRIHGDEKRGQR AAKLLIKLEPQNSSPYVLLSNLHAASGHWDEARSLRRTMMQKEIQKMPGCSWIVVGQKTNSFVASDTSHPCSDEILHILK HLTALMKDNRYQEYGICQVGQI 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 15 138 124 9.0E-19
PANTHER 29 145 117 5.1E-155
ProSiteProfiles 57 87 31 7.629
TIGRFAM 63 90 28 4.3E-4
SUPERFAMILY 69 757 689 6.78E-7
ProSiteProfiles 88 122 35 11.849
Pfam 88 132 45 3.8E-10
TIGRFAM 92 121 30 9.4E-7
ProSiteProfiles 123 157 35 5.272
PANTHER 126 236 111 5.1E-155
Gene3D 139 240 102 2.1E-20
ProSiteProfiles 158 188 31 7.125
Pfam 163 186 24 0.13
Pfam 188 235 48 3.7E-12
ProSiteProfiles 189 223 35 11.082
TIGRFAM 191 225 35 2.2E-6
ProSiteProfiles 224 258 35 6.029
Gene3D 241 319 79 8.2E-7
PANTHER 243 352 110 5.1E-155
ProSiteProfiles 259 289 31 9.405
Pfam 264 289 26 0.001
ProSiteProfiles 290 324 35 10.052
Pfam 292 319 28 0.013
TIGRFAM 292 326 35 3.6E-4
ProSiteProfiles 325 359 35 5.963
Gene3D 339 438 100 3.7E-16
PANTHER 346 437 92 5.1E-155
ProSiteProfiles 360 394 35 8.681
Pfam 365 390 26 0.1
PANTHER 444 552 109 5.1E-155
Gene3D 447 544 98 9.7E-13
ProSiteProfiles 493 527 35 10.446
Pfam 495 540 46 1.5E-10
TIGRFAM 495 528 34 1.1E-6
ProSiteProfiles 528 562 35 5.919
PANTHER 542 760 219 5.1E-155
Gene3D 545 655 111 4.6E-28
ProSiteProfiles 563 593 31 8.155
Pfam 568 590 23 0.0098
Pfam 594 642 49 9.6E-13
ProSiteProfiles 595 629 35 12.923
TIGRFAM 597 630 34 1.1E-7
ProSiteProfiles 630 665 36 7.015
Gene3D 656 766 111 4.2E-6
ProSiteProfiles 666 696 31 5.81
ProSiteProfiles 732 766 35 7.794

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0417900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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