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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0419200 |
| Transcript ID | LotjaGi4g1v0419200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal L24; TAIR: AT2G36620.1 ribosomal protein L24; Swiss-Prot: sp|Q9FUL4|RL24_PRUAV 60S ribosomal protein L24; TrEMBL-Plants: tr|I3SS30|I3SS30_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0419200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79474160..79476977) extracted from Lotus japonicus Gifu genome v1.2.
CCTAAAATTTGTAAAAACAATTTGTATTTTAGCTCAAATACAATCTTAAAACACATTTTTTGTCAAATATAAAATAATAA ATATTTTAGCGTGGGCTACAATTATGGGCTTATACCTCAAACCCAGCACTAGGCCCAAATGGAGTCCATATGAAGACGAA GCCAATGCTATTTACATGGTGATTCTCGCTTTAGGTTTTAGGGTTTACAAAAGGAGGCACCGCGCGCAGCAGCACAAGGA GGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCCATGGTTCTCAAGTACGTTTGTTCATAGATTTCAATTTACGATCTCAT CTTCAAGCAGTTTCGTTGTATTCGATTCTATAAGCTTCATTTTCATCGCTAATTTCGATTTGATTTTGTTTGGTGTAACA CTAACAGGACAGAGCTTTGCCGATTCAGCGGTGCCAAGATCTACCCTGGTAGAGGCATCAGATTCATTCGCAGTGATTCT CAGGTCAATAATCTCGTCTTCTTGCTTCCATTTCTACCTCAATGCTCATTATTTGAGGCGATTTTGGTTGTTGATTTTGC AGGTGTTTCTGTTTGTCAACTCGAAATGCAAACACTACTTCCACAACCGCTTGAAGCCTTCCAAGCTCACCTGGACCGCC ATGTACAGGAAGCAGCACAAGAAGGTGAGAATTGTTAAACTGTAATGCTTTGTGTAGGATAAACTAGCTTAAAACTTATG AGCTTGTTGTTACATTAGATTTGCTGTTAATGAATCTGGTTAGGAGGTGAAGATGTTTACATTCAACTGCTTGAATTGAA TTTGACACTTTCTGATTGTGCTTTTTGCGTGCATTTTAATTGATTTGTTTTCAACTTAATTGAGCTTGTCAAGTAAGATT TGCTGTTAATTAATCTGGTTAGAATGTGAAGTTGTTGCTATGCGCCTGCTTGAAATGAATTTGACAGTTTCTGACTGTAC TTGTTGTGTGCATCTTTATTGATTTGTTATCAACTAAATTAACATTACAGCCACTTCTTTAACCATGGACCTGTCAATGT TAGATGTTTAATTTTTCCCCTGGACTTTTAATAGATGACAGTGATGAGTATTCAATCGTTTAGTATGTTAATTGAAATCT GTGAACCATAAATGTAGAGGAAATAACTTGGATGCAATAGTGTCTGAAGACTTTGACTAATTTATATACTAACTCGTTCC GTTGATTTAGTCATTGATTAAATTTTAATGTGATAGTAATTTAACTCCTTCATAGTTTTTAAGAAGATACTAGAGAAGTA GCCCTATATATAATATATGGTAGCCTTATTTGCAAGACTAAATATATTATGAATCATCCTACGGGCATATCTTTTCATGA CTATTAATTGTTTACTATAACATATGAGAACTACTTATTGTAATTCATTTTAATCTGCTTGTATCAGTTTTTAGTTTGCC AATATATTTCATAACTTGGTGTGTGCATTTTAATTGATTGTTTGTGTGGATGTTATTATCTGCAGGATATTGCTCAAGAA GCTGTGAAGAAGAGGCGTCGTGCTACCAAGAAGCCTTACTCTAGGTCCATTGTTGGTGCTACTCTGGAAGTTATCCAGAA GAAAAGAACTGAGAAGCCTGAGGTTCGAGATGCAGCTAGGGAAGCTGCTCTTCGGTGGGTGCTATTTTAATTCCTTAATT CTTTTGTTTCGGCATTTGCTTCCTTATTTTTTATGATGTTCATGTTTTTTTATATGAATCATATGATGTTGACTGTTTTA AGACTTAGCTTTTGAGTCCGGCATGTAAACGTACTGATAATCTAATTATCTGAATCTGCTGTGTTCAGTGAAATTAAGGA GAGAATCAAGAAAACCAAGGATGAGAAGAAGGCCAAGAAAGCTGAAACAACTGCTAAGTCACAAAAATCTCAAGGAAAAG GCAATGTCTCCAAGGGTGCTGCACCGAAAGGTCCCAAACTTGGTGGTGGAGGCGGGAAACGTTAAGTTTTTAGTCTTCTA TTGGTTGCCGTTTAAACATTTTGTTCTGAAAATTCTGTGCTGATATATTATATTTGCTTGACTAGTCTTTCATTTACTGT TTTATCAAACTTTGTATGGAGCTTCATAGAGTATCTGGTTATTGAATGGATTTTGCCCGCTGTGCTAGTTTTGTGATTTC ATGCTAATGTTTCTGTTGGGTTTCTTAGTGTTTTTTGTTGGGAGTTGAACTGAACGTAGGTTGAGATTTAACGTCCTTTT GCTTGTGTTTGTCAATTTTTTGGTTCCATTGTAGCATTTGCTCAAAAATTGATTTTGATTTGAGCTTGAGGCAATTTGCT TTTTGAACAAGCAAGGCTTTTTCTTAATTCTTCAATAGTGACCTTTACCACGTTTTCTGTAACTTTTTTTTGGGTCTCAT CTCAGAACTTGCACATTTTCAGCTAATCTTGAATTAACATAATATTTTGTACTTTAAATTAAGCATCTTTTATTATTAAC ATCATGTGAGCAGGAATGTAGTTTTTCTAGTTTAACATTTTAAATTGAATGAAGATCCATCTCGTTTAATAACTAAAGTG AAATGTTTTAGTGATACAACTTCAACTCGTTTATTGTCGTTCCATCTTTTTGTTAAGTTTTAGTAATGGATATTGTATTT TCAGAGTCATTTGCGAGTCGTAGCTATTTCAGAATCTTAGATGCCCTAAGTGTTATAATCAAGGATCATTTTAAACAATT TGGAATTTTAGATGCACTAAGTATTATAATCAGAATCATTTTAAACAATTTGTCATTTCACCTAGGATTCAATTGTTCCA CAAGAAAATAGTTGTTGC
CDS sequence (LotjaGi4g1v0419200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCAAGACAGAGCTTTGCCGATTCAGCGGTGCCAAGATCTACCCTGGTAGAGGCATCAGATTCATTCGCAGTGA TTCTCAGGTGTTTCTGTTTGTCAACTCGAAATGCAAACACTACTTCCACAACCGCTTGAAGCCTTCCAAGCTCACCTGGA CCGCCATGTACAGGAAGCAGCACAAGAAGGATATTGCTCAAGAAGCTGTGAAGAAGAGGCGTCGTGCTACCAAGAAGCCT TACTCTAGGTCCATTGTTGGTGCTACTCTGGAAGTTATCCAGAAGAAAAGAACTGAGAAGCCTGAGGTTCGAGATGCAGC TAGGGAAGCTGCTCTTCGTGAAATTAAGGAGAGAATCAAGAAAACCAAGGATGAGAAGAAGGCCAAGAAAGCTGAAACAA CTGCTAAGTCACAAAAATCTCAAGGAAAAGGCAATGTCTCCAAGGGTGCTGCACCGAAAGGTCCCAAACTTGGTGGTGGA GGCGGGAAACGTTAA
Protein sequence (LotjaGi4g1v0419200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKP YSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKDEKKAKKAETTAKSQKSQGKGNVSKGAAPKGPKLGGG GGKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 64 | 64 | 2.2E-30 | ||
| PANTHER | 3 | 164 | 162 | 1.4E-97 | ||
| CDD | 3 | 56 | 54 | 4.49731E-19 | ||
| PANTHER | 3 | 164 | 162 | 1.4E-97 | – | |
| Pfam | 4 | 67 | 64 | 2.7E-28 | ||
| SUPERFAMILY | 6 | 58 | 53 | 7.27E-17 | – | |
| SMART | 8 | 46 | 39 | 7.6E-4 | ||
| ProSitePatterns | 10 | 27 | 18 | - | ||
| Gene3D | 69 | 101 | 33 | 2.4E-5 | – | |
| Coils | 112 | 136 | 25 | - | – | |
| MobiDBLite | 115 | 164 | 50 | - | – | |
| MobiDBLite | 115 | 136 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0419200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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