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LotjaGi4g1v0437200.2

Overview

Field Value
Gene ID LotjaGi4g1v0437200
Transcript ID LotjaGi4g1v0437200.2
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description 3-oxoacyl-[acyl]-carrier-protein] synthase, putative; TAIR: AT5G46290.1 3-ketoacyl-acyl carrier protein synthase I; Swiss-Prot: sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase I, chloroplastic; TrEMBL-Plants: tr|A0A151RI86|A0A151RI86_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0437200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:81012401..81016013) extracted from Lotus japonicus Gifu genome v1.2.

CCAAATTCCAAAAAAAACTTGTTTTCTTGTATTTTTCTCTTTCAACCTTTTCTATTTGCTGATTCTCTTCCACTGACAAT CCAAAGTTCACTCTCTTGCTTTGAATCAACATCAAATCAGAGTGTCACAGACACATAAGTAAAGATAGATTAAATGGCAG GCATTGCAAGTACATGTCCTTTAGAAGCATTGCTCACAAACAAAGTCTCAAAAGGCAATGGGGTGTCTCTGGTTCAGTAT GATGGTCTTAGATTGGCGCAAAGAATGCAATTATCTTCAGCTGCAAGCATCTCAAAAGGTTGAAATAGTCACATAGTGTA TCTTGATCAGAATTGAAGTTATTATATGAGCATGTATATAAGGTTTACTATTACTTTTATACATTTTCTCTGTCTGTTCT GAAGTCACAAATCTCATCCTACTCATACTACAGATAGGATTTAAATCTGAAATTTCTTAAAAAGCATTAGGTAACAGTAA GCTATAGTGACATCCCAGGTTATGTTAGCTACTTTCCCATATTGTTAGTACATGTTCTGCCTCTTACAAAAACAAAACAT GTTCTGGCTCTGTGTATACTTGGGAATGGTTGTTATTATATAAGTACTTGAAACATTTGGTATCTGATAATTTTTAGATA CTTCAGAGATAATCTTAATTTTAGAGTTCATTCTTTTACTGATACAAATATCATAATTAGGTAAAACGACACTACTTTAT AGGATAAGTCAAACCCTTAAAACTGTTTAAGTAGAGGTCCTCAATTCGAGTCTCTGAATGCAGCTACGTTAAATTCTTGA TAGGGAGAGTTTTACCGCCTATAATGGTTAGTGGAGGACATATGTGGTTCAAAAAAAATACCTTAAAACTAATAAACTTA TAATATATAAACGCCGTTAATATTTATTTCAATATCTTGTATTTTGAAGCTTCTGACTTGCATTGCAGCCTCCAAATGCA AAACAATTAAGGCCACAGCTTCTCCAACTGAAGCAGCTCCTAAAAGAGAACAAGATCCGAAAAAGCGAGTAGTAATAACA GGAATGGGGCTTGTTTCCATCTTTGGCAGTGACATTGATACATTTTACAACAAGCTTCTTGCGGGAGAAAGTGGGATAAG TGTAATAGATAGGTTTGACCCCTCAAAATTCCCTGTCCGTTTTGGTGGCCAGATACGTGATTTCTCTTCAGAAGGTTACA TTGATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGTTGCAGGCAAGAGGGCTCTTGAAGATGCC AACCTTGGACATGAAGTCCTTAAGAATGTAAGTTTCAGTGTTATTTTTGAAATTACATTGCAATGATTAGTTTCCTAACT TATGATTGATAACATACACAATAGATGTCATGATCATGAACCAACTATCCTGCAAGTTTAAGCTATTAGGTGAAAACACA CGAGTGATTTTATACTATACTTCTAACATGCTCTCGCAAGTTCATTTAGCTTGAAGCATGAACAATACACAAGCTCACTA CAACGTTCTTAAATTAAACTTTTTATTAGAATCATGGAGGGATCGAACTCTAGACCATTTACTCATAACTCTGATGCTTT GTCGTTAACCAATTATTCCAAAATCTTAAAAGTTAATGAGAGAAGATAGATGAATGATTTTATATTATAGTTTTGACAAT AGATGCATTGTCTTTATAGCAGATGAACAAAACAAGAATAGGAGTTATAGTTGGATCAGGATTGGGAGGTGTAACAGCTT TCAACACTGGTGTGGAAGCTCTTCTAGAGAAGGGATATAAGAAAATTAGTCCATTTTTCATTCCCTACTTCATCACCAAC ATGGGTTCTGCTTTGTTGGCTATAGATACTGGCCTAACAGGTCCATATTATTCCATTTCTACTGCTTGTGCAACAGCAAA TTACTGCTTTTATGCAGCTGCTAATCAAATCAGAAGAGGGGAAGCAGATGTTATGGTGGTTGGTGGGACTGAAGCTTCAA TCGTTCCTTCCAGTGTTGGAGGCTTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAAGACCCCAAGAAGGCTTCAAGA CCATGGGACAAAGATCGCGATGGTTTTGTCTTGGGTGAAGGCTCTGGTGTGCTGGTAGAACCTAGAACCTAAAACCCAAT TTTTTCTTTAGTAGTATATATATATATATCTTTGATTGACCTAATGAAATTCCAATGGTAACAACTGGATTCTCTATCAC TGAGAAAAGGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGAGGAGCCACAATAATAGCAGAATATCTGGGGGGTGCCAT AACATGTGATGCTCATCACATGACAAACCCAGGGCCTGATGGACTAGGAGTTTCAATTTGCATATGGAAGAGTTTAGAAA ATGCTGGGGTTTCCCCTGAAGAGGTAAGAAATAGAATTCTGTAGTTTTTCACGTCTCTTAGCATAGGTCACTTTAAAATA TCTATGTAGCATTAATCACTTTTTTCTAAGTTTACCCTTAATATTTAACGCTCCATACTCAATAATCTAATGCTTATCAC TAAATTCTTTTAGTTTTCTTATAGGAGAGAGTTAAAAAAAATATCATTTTCTTATTTAAGACTAACAAATGTGTACGAAT TAGTTACATGTAACTTATAAATAAGAACAGAGGAAGTAATAACAAGCAACCAGGATCAAAATTGGCACATTCCTCTAAAG CGAGTTCAGATTCTCATGTTCATGTAAAGCTGATGAATCCTGCTTTGTACAGGTGACCTATATCAATGCTCATGCCACAT CAACACTAGCAGGTGACCTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCAGAATTGAAAATGAATGCC ACTAAGGTAAGAAATTTGTTTACTTTTTAAATATTTCAGAACCTCAACAGCATCCTCTTTTTTACCTTGAATCTTTTCAT GACATTTTCTTCCTGTTTCAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGGCTTGGAAGCTATAGCAACTATCAA AGCAATAACAACTGGCTGGTTGCACCCAACCATTAACCAAGATGTACTTTCCTCAGCCAGAAACTCATCCTATTAATCAA ATACTACGTTTTATTTATTGATTCCCTTTATCACTTGATTTACTCATTTTTCCTCAGAACTTGGAGGATTATGTTACAAT TGACACCGTCCCTAACGTCAAGAAGCAGCATGAAGTTAATGTTGGTATGTACTATATCTCTGTGCAAATTCTGGTAACAA TGTAAAAACCAATTAATGTTTCTGATCTTTGGTGCACTTTCTGCAGCTATCTCCAACTCATTTGGGTTCGGTGGACACAA TTCAGTTGTTGTCTTTGCTCCATTCAGGCCCTAACTAGAATTCAAGCACAAGCTGCTTTATATGTGTTTGAAATGATAAC CGAGGTTAATGATCAAGTACCCAGACTCGGTGCCCTGATGTAATGAACCCTGAAGTGAATAAAATTCACATGTTATCGAT TTGTGTTTGGAATTGCCTTTGTCTAGTAGACAGCTAAGTATCAATGAAGTAAAGAACTTGTTACTTTCAGCAAATGGGTA GTAGTCACTTTCC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0437200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGGCATTGCAAGTACATGTCCTTTAGAAGCATTGCTCACAAACAAAGTCTCAAAAGGCAATGGGGTGTCTCTGGT TCAGTATGATGGTCTTAGATTGGCGCAAAGAATGCAATTATCTTCAGCTGCAAGCATCTCAAAAGCCTCCAAATGCAAAA CAATTAAGGCCACAGCTTCTCCAACTGAAGCAGCTCCTAAAAGAGAACAAGATCCGAAAAAGCGAGTAGTAATAACAGGA ATGGGGCTTGTTTCCATCTTTGGCAGTGACATTGATACATTTTACAACAAGCTTCTTGCGGGAGAAAGTGGGATAAGTGT AATAGATAGGTTTGACCCCTCAAAATTCCCTGTCCGTTTTGGTGGCCAGATACGTGATTTCTCTTCAGAAGGTTACATTG ATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGTTGCAGGCAAGAGGGCTCTTGAAGATGCCAAC CTTGGACATGAAGTCCTTAAGAATATGAACAAAACAAGAATAGGAGTTATAGTTGGATCAGGATTGGGAGGTGTAACAGC TTTCAACACTGGTGTGGAAGCTCTTCTAGAGAAGGGATATAAGAAAATTAGTCCATTTTTCATTCCCTACTTCATCACCA ACATGGGTTCTGCTTTGTTGGCTATAGATACTGGCCTAACAGGTCCATATTATTCCATTTCTACTGCTTGTGCAACAGCA AATTACTGCTTTTATGCAGCTGCTAATCAAATCAGAAGAGGGGAAGCAGATGTTATGGTGGTTGGTGGGACTGAAGCTTC AATCGTTCCTTCCAGTGTTGGAGGCTTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAAGACCCCAAGAAGGCTTCAA GACCATGGGACAAAGATCGCGATGGTTTTGTCTTGGGTGAAGGCTCTGGTGTGCTGGTAATGGAGAGCTTGGAGAGTGCA ACAAAAAGAGGAGCCACAATAATAGCAGAATATCTGGGGGGTGCCATAACATGTGATGCTCATCACATGACAAACCCAGG GCCTGATGGACTAGGAGTTTCAATTTGCATATGGAAGAGTTTAGAAAATGCTGGGGTTTCCCCTGAAGAGGTGACCTATA TCAATGCTCATGCCACATCAACACTAGCAGGTGACCTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCA GAATTGAAAATGAATGCCACTAAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGGCTTGGAAGCTATAGCAACTAT CAAAGCAATAACAACTGGCTGGTTGCACCCAACCATTAACCAAGATAACTTGGAGGATTATGTTACAATTGACACCGTCC CTAACGTCAAGAAGCAGCATGAAGTTAATGTTGCTATCTCCAACTCATTTGGGTTCGGTGGACACAATTCAGTTGTTGTC TTTGCTCCATTCAGGCCCTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0437200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAGIASTCPLEALLTNKVSKGNGVSLVQYDGLRLAQRMQLSSAASISKASKCKTIKATASPTEAAPKREQDPKKRVVITG MGLVSIFGSDIDTFYNKLLAGESGISVIDRFDPSKFPVRFGGQIRDFSSEGYIDGKNDRRLDDCWRYCLVAGKRALEDAN LGHEVLKNMNKTRIGVIVGSGLGGVTAFNTGVEALLEKGYKKISPFFIPYFITNMGSALLAIDTGLTGPYYSISTACATA NYCFYAAANQIRRGEADVMVVGGTEASIVPSSVGGFIACRALSQRNEDPKKASRPWDKDRDGFVLGEGSGVLVMESLESA TKRGATIIAEYLGGAITCDAHHMTNPGPDGLGVSICIWKSLENAGVSPEEVTYINAHATSTLAGDLAEVNAIKQVFKDTS ELKMNATKSMIGHGLGASGGLEAIATIKAITTGWLHPTINQDNLEDYVTIDTVPNVKKQHEVNVAISNSFGFGGHNSVVV FAPFRP
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11712:SF330
40 485 446 2.2E-279 –
PANTHER
PTHR11712
40 485 446 2.2E-279
IPR000794
Gene3D
G3DSA:3.40.47.10
61 328 268 1.1E-79
IPR016039
CDD
cd00834
74 481 408 0.0 –
Pfam
PF00109
74 320 247 1.8E-56
IPR014030
TIGRFAM
TIGR03150
74 481 408 3.0E-159
IPR017568
SUPERFAMILY
SSF53901
74 325 252 1.76E-69
IPR016039
SMART
SM00825
76 486 411 2.9E-13
IPR020841
ProSitePatterns
PS00606
228 244 17 -
IPR018201
SUPERFAMILY
SSF53901
288 481 194 1.75E-59
IPR016039
Pfam
PF02801
329 441 113 1.6E-31
IPR014031
Gene3D
G3DSA:3.40.47.10
330 473 144 8.0E-44
IPR016039

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006633
Biological process Fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
Subterm of
GO:0016747
Molecular function Transferase activity, transferring acyl groups other than amino-acyl groups Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0437200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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