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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0437200 |
| Transcript ID | LotjaGi4g1v0437200.8 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-[acyl]-carrier-protein] synthase; TAIR: AT5G46290.1 3-ketoacyl-acyl carrier protein synthase I; Swiss-Prot: sp|P52410|KASC1_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase I, chloroplastic; TrEMBL-Plants: tr|A0A0L9TGW5|A0A0L9TGW5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0437200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81012620..81015321) extracted from Lotus japonicus Gifu genome v1.2.
ATAATTAGGTAAAACGACACTACTTTATAGGATAAGTCAAACCCTTAAAACTGTTTAAGTAGAGGTCCTCAATTCGAGTC TCTGAATGCAGCTACGTTAAATTCTTGATAGGGAGAGTTTTACCGCCTATAATGGTTAGTGGAGGACATATGTGGTTCAA AAAAAATACCTTAAAACTAATAAACTTATAATATATAAACGCCGTTAATATTTATTTCAATATCTTGTATTTTGAAGCTT CTGACTTGCATTGCAGCCTCCAAATGCAAAACAATTAAGGCCACAGCTTCTCCAACTGAAGCAGCTCCTAAAAGAGAACA AGATCCGAAAAAGCGAGTAGTAATAACAGGAATGGGGCTTGTTTCCATCTTTGGCAGTGACATTGATACATTTTACAACA AGCTTCTTGCGGGAGAAAGTGGGATAAGTGTAATAGATAGGTTTGACCCCTCAAAATTCCCTGTCCGTTTTGGTGGCCAG ATACGTGATTTCTCTTCAGAAGGTTACATTGATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGT TGCAGGCAAGAGGGCTCTTGAAGATGCCAACCTTGGACATGAAGTCCTTAAGAATGTAAGTTTCAGTGTTATTTTTGAAA TTACATTGCAATGATTAGTTTCCTAACTTATGATTGATAACATACACAATAGATGTCATGATCATGAACCAACTATCCTG CAAGTTTAAGCTATTAGGTGAAAACACACGAGTGATTTTATACTATACTTCTAACATGCTCTCGCAAGTTCATTTAGCTT GAAGCATGAACAATACACAAGCTCACTACAACGTTCTTAAATTAAACTTTTTATTAGAATCATGGAGGGATCGAACTCTA GACCATTTACTCATAACTCTGATGCTTTGTCGTTAACCAATTATTCCAAAATCTTAAAAGTTAATGAGAGAAGATAGATG AATGATTTTATATTATAGTTTTGACAATAGATGCATTGTCTTTATAGCAGATGAACAAAACAAGAATAGGAGTTATAGTT GGATCAGGATTGGGAGGTGTAACAGCTTTCAACACTGGTGTGGAAGCTCTTCTAGAGAAGGGATATAAGAAAATTAGTCC ATTTTTCATTCCCTACTTCATCACCAACATGGGTTCTGCTTTGTTGGCTATAGATACTGGCCTAACAGGTCCATATTATT CCATTTCTACTGCTTGTGCAACAGCAAATTACTGCTTTTATGCAGCTGCTAATCAAATCAGAAGAGGGGAAGCAGATGTT ATGGTGGTTGGTGGGACTGAAGCTTCAATCGTTCCTTCCAGTGTTGGAGGCTTCATTGCTTGCAGGGCTTTGTCTCAGAG GAATGAAGACCCCAAGAAGGCTTCAAGACCATGGGACAAAGATCGCGATGGTTTTGTCTTGGGTGAAGGCTCTGGTGTGC TGGTAGAACCTAGAACCTAAAACCCAATTTTTTCTTTAGTAGTATATATATATATATCTTTGATTGACCTAATGAAATTC CAATGGTAACAACTGGATTCTCTATCACTGAGAAAAGGTAATGGAGAGCTTGGAGAGTGCAACAAAAAGAGGAGCCACAA TAATAGCAGAATATCTGGGGGGTGCCATAACATGTGATGCTCATCACATGACAAACCCAGGGCCTGATGGACTAGGAGTT TCAATTTGCATATGGAAGAGTTTAGAAAATGCTGGGGTTTCCCCTGAAGAGGTAAGAAATAGAATTCTGTAGTTTTTCAC GTCTCTTAGCATAGGTCACTTTAAAATATCTATGTAGCATTAATCACTTTTTTCTAAGTTTACCCTTAATATTTAACGCT CCATACTCAATAATCTAATGCTTATCACTAAATTCTTTTAGTTTTCTTATAGGAGAGAGTTAAAAAAAATATCATTTTCT TATTTAAGACTAACAAATGTGTACGAATTAGTTACATGTAACTTATAAATAAGAACAGAGGAAGTAATAACAAGCAACCA GGATCAAAATTGGCACATTCCTCTAAAGCGAGTTCAGATTCTCATGTTCATGTAAAGCTGATGAATCCTGCTTTGTACAG GTGACCTATATCAATGCTCATGCCACATCAACACTAGCAGGTGACCTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAA GGACACATCAGAATTGAAAATGAATGCCACTAAGGTAAGAAATTTGTTTACTTTTTAAATATTTCAGAACCTCAACAGCA TCCTCTTTTTTACCTTGAATCTTTTCATGACATTTTCTTCCTGTTTCAGTCAATGATTGGTCATGGTCTTGGGGCTTCTG GTGGCTTGGAAGCTATAGCAACTATCAAAGCAATAACAACTGGCTGGTTGCACCCAACCATTAACCAAGATGTACTTTCC TCAGCCAGAAACTCATCCTATTAATCAAATACTACGTTTTATTTATTGATTCCCTTTATCACTTGATTTACTCATTTTTC CTCAGAACTTGGAGGATTATGTTACAATTGACACCGTCCCTAACGTCAAGAAGCAGCATGAAGTTAATGTTGGTATGTAC TATATCTCTGTGCAAATTCTGGTAACAATGTAAAAACCAATTAATGTTTCTGATCTTTGGTGCACTTTCTGCAGCTATCT CCAACTCATTTGGGTTCGGTGGACACAATTCAGTTGTTGTCTTTGCTCCATTCAGGCCCTAA
CDS sequence (LotjaGi4g1v0437200.8) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGCTTGTTTCCATCTTTGGCAGTGACATTGATACATTTTACAACAAGCTTCTTGCGGGAGAAAGTGGGATAAGTGT AATAGATAGGTTTGACCCCTCAAAATTCCCTGTCCGTTTTGGTGGCCAGATACGTGATTTCTCTTCAGAAGGTTACATTG ATGGCAAGAATGACCGGCGCCTCGATGATTGCTGGAGGTATTGCTTAGTTGCAGGCAAGAGGGCTCTTGAAGATGCCAAC CTTGGACATGAAGTCCTTAAGAATATGAACAAAACAAGAATAGGAGTTATAGTTGGATCAGGATTGGGAGGTGTAACAGC TTTCAACACTGGTGTGGAAGCTCTTCTAGAGAAGGGATATAAGAAAATTAGTCCATTTTTCATTCCCTACTTCATCACCA ACATGGGTTCTGCTTTGTTGGCTATAGATACTGGCCTAACAGGTCCATATTATTCCATTTCTACTGCTTGTGCAACAGCA AATTACTGCTTTTATGCAGCTGCTAATCAAATCAGAAGAGGGGAAGCAGATGTTATGGTGGTTGGTGGGACTGAAGCTTC AATCGTTCCTTCCAGTGTTGGAGGCTTCATTGCTTGCAGGGCTTTGTCTCAGAGGAATGAAGACCCCAAGAAGGCTTCAA GACCATGGGACAAAGATCGCGATGGTTTTGTCTTGGGTGAAGGCTCTGGTGTGCTGGTAATGGAGAGCTTGGAGAGTGCA ACAAAAAGAGGAGCCACAATAATAGCAGAATATCTGGGGGGTGCCATAACATGTGATGCTCATCACATGACAAACCCAGG GCCTGATGGACTAGGAGTTTCAATTTGCATATGGAAGAGTTTAGAAAATGCTGGGGTTTCCCCTGAAGAGGTGACCTATA TCAATGCTCATGCCACATCAACACTAGCAGGTGACCTGGCTGAGGTTAATGCAATCAAACAAGTTTTTAAGGACACATCA GAATTGAAAATGAATGCCACTAAGTCAATGATTGGTCATGGTCTTGGGGCTTCTGGTGGCTTGGAAGCTATAGCAACTAT CAAAGCAATAACAACTGGCTGGTTGCACCCAACCATTAACCAAGATAACTTGGAGGATTATGTTACAATTGACACCGTCC CTAACGTCAAGAAGCAGCATGAAGTTAATGTTGCTATCTCCAACTCATTTGGGTTCGGTGGACACAATTCAGTTGTTGTC TTTGCTCCATTCAGGCCCTAA
Protein sequence (LotjaGi4g1v0437200.8) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGLVSIFGSDIDTFYNKLLAGESGISVIDRFDPSKFPVRFGGQIRDFSSEGYIDGKNDRRLDDCWRYCLVAGKRALEDAN LGHEVLKNMNKTRIGVIVGSGLGGVTAFNTGVEALLEKGYKKISPFFIPYFITNMGSALLAIDTGLTGPYYSISTACATA NYCFYAAANQIRRGEADVMVVGGTEASIVPSSVGGFIACRALSQRNEDPKKASRPWDKDRDGFVLGEGSGVLVMESLESA TKRGATIIAEYLGGAITCDAHHMTNPGPDGLGVSICIWKSLENAGVSPEEVTYINAHATSTLAGDLAEVNAIKQVFKDTS ELKMNATKSMIGHGLGASGGLEAIATIKAITTGWLHPTINQDNLEDYVTIDTVPNVKKQHEVNVAISNSFGFGGHNSVVV FAPFRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | 1 | 401 | 401 | 0.0 | – | |
| PIRSF | 1 | 406 | 406 | 4.9E-181 | ||
| TIGRFAM | 1 | 401 | 401 | 5.3E-154 | ||
| Gene3D | 1 | 248 | 248 | 2.2E-73 | ||
| SUPERFAMILY | 1 | 245 | 245 | 6.58E-65 | ||
| Pfam | 1 | 240 | 240 | 6.6E-52 | ||
| PANTHER | 1 | 405 | 405 | 4.0E-260 | ||
| PANTHER | 1 | 405 | 405 | 4.0E-260 | – | |
| SMART | 4 | 406 | 403 | 1.5E-12 | ||
| ProSitePatterns | 148 | 164 | 17 | - | ||
| SUPERFAMILY | 208 | 401 | 194 | 1.14E-59 | ||
| Pfam | 249 | 361 | 113 | 1.1E-31 | ||
| Gene3D | 250 | 393 | 144 | 5.6E-44 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0437200.8, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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