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LotjaGi4g1v0441000.1

Overview

Field Value
Gene ID LotjaGi4g1v0441000
Transcript ID LotjaGi4g1v0441000.1
Lotus japonicus genome version Gifu v1.2
Description MYB-like transcription factor family protein; TAIR: AT5G56840.1 myb-like transcription factor family protein; Swiss-Prot: sp|Q9FKF9|M5162_ARATH Probable transcription factor At5g61620; TrEMBL-Plants: tr|I3T2H3|I3T2H3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0441000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:81455004..81458423) extracted from Lotus japonicus Gifu genome v1.2.

GAATCTTGTTATGGATAAATTCCATCCACGCATACCTCAGAAACTCACGCAAATAGCTCGACCATCATCTAAGGTGAACT TCATAGCTTGAGACTATTGTTTTGGTCAGTTTCCATCCAGATATACCTTAAATACCAACACACATAGCTCGGTCATCACC TGAGGTAAAGGTAAGAGTTAGAAGGCTACTGTTCTGGTTAGTTTCCGTCTAGGAATTCCTTGGACACCACATAGCTCAGC CATTACTCAAGGCGAAGGTCAGAGCTAGAGGGCTAAGGTATATTGTCCATCTCATGATTTTACGACTTGGCCGACTATAA AATATCTCAGTCGAAATTACGATAAGATTCTCAACTCCACACTCGACCTATACCAAACAACAATCATCTCATGTTGTGTA GTTCAAGTTACCCCATCCTATGAGCCTACAAGCAAAGGACTGACGACTTATTAGTTGTGACAAGTGAAGTGAAGCGCTCT CAACAAAGCCTATGGCCACACCACCTTTGAGTATTAGCAACACTAGAGTGAGTGTTTGGATTTTGTCCAATCAACACATA AAAATATATAAAAGAGTATTAGCAATACTCGCTCTAACACCCTCTTTTCAATATTCTTTTATTTTTTATTGAAATTTATG CAGCATGAGGTATCACATAAATTTAAACTAATAAATAAGAGTGTTGTTAGCGTTTTTGAAAAGTATATAAGCAGGTTTCT AAATGACATATTACTGTTCAAACTAAATTTTCCTTTATAGTTCTAGTCCTAGAGGACATAAATGCTCAAATTAAGATAAG GTTTATACATCTTATATTTTCCCTTTTTAATAAAGAGGAAAATAAATATATATTTGCAAAGTATTCAATAAACAATCAGC TTAATGTCCATCCAATTAACTTCTGTTGGTGTGCATCCACTTTCATTAACCCCACATCTTACTCCATCATAATATATACC ACCAAACAAATTCATTTTTTCTGCCATCATCTTTCTTTCTCTTACTCTCTACCAATCTCTTTCTCAGACACATACACAGT TTAGTGTTGAGGAGTGTGTGTCAGCTGAGAAAATCTTGTTCAAGTGAAAATGGGCAGGAAGTGCTCACATTGTGGAAACA TTGGTCACAATTCTAGGACCTGCACATTTTCCAGAGGCGTTGGACTTCGCCTCTTTGGCGTGCAACTAGATATTTCTTCT TCATCACCTTCTCATCATTTTACCATCAAGAAAAGCGTTAGCATGGACTCCTTTCCCTCACCATCCTCTCCATCTTCCTC GTTTTCTTCATCAAGAATAGCCATTTTTGATGATAGAACCTCTATTGGCTATCTATCAGATGGTCTTATAGGTCGACCCC AAGACAGGAAAAAAGGTATATATTGATTGATCACAATGAGTTTTAACCTTTATCCATACATATACTTGTTTCTTCATCAC AACAAAATAATATGCATAATATAATTAATGATTCCTTCTACTCTTTTCTCCTACACCTCTAATAGTATGATTGAATCAAT TTCTCTTTTCTCATAATCAATTCTGTTACTCAGAAGCTACTTCTCTCTTGAATTGGTTCTGTCTTTAGAATCATTTAATC AACTGTCAGGTTTATGAGTTTATCTATGTTTCAAATAATCTACTATATAACAATTTATAATTTATTTTTGTTATGTTTTA TGTATGCAAAATCAGGAGTTCCCTGGACAGAGGAGGAGCACAGAATATTCCTTGTTGGACTTGAGAAGCTGGGAAAAGGT GACTGGAGAGGAATCTCTAAAAACTTTGTGACTACAAGAACCCCAACACAAGTGGCCAGCCATGCTCAGAAGTACTTTCT TCGATTGGCAACTATAGCTAACAAGAAGCGACGTTCAAGCCTCTTTGACTTGGTATATATAGATAACAGTTAATGATACA TGTTTGGAAATCCTTCTGTAATTGATTCTAAAGTCCGAATCAATTCTATACTAACATGCTATGATTATAATTAAGTACAC TGAAATGGTACTTTTCTCTATACTAAGAATGTAACTATTTTTTATTTCTTAGCTAATTGTCATTGAATATTATGGCAGGT TGATAGCAGCAACACCAAGATAGAAGGTTATCAGAAGGATAAGGGGTCTAAATGTGAAGTTGGGAATGATGCCACTTTGT CATTGATAACTAATTACTTTCAACAAGAAAAAACCAAATCAGATAAGCAAGAAACTTGTGATGATGATCACACATCTGAA ATTGAACCATCTGGTGCAGAACATGAAGCTGTGCCTATCTGGCTACATTCTTCAAATGTGGCAGTACAGAGTTCCCAAAA TGCAACAGCACCTGACCTGGAGCTTACTCTTGCAGCACCTAAGGTTATGATGCTGGAACAAAATGAATCATCCCCTGCAG CTCAATTCCTGCTTGGACCAATTACCGTGACTTAAACTGTTAAATTTTATAAATGTTCTTAATTAAATAACAATTTATCC TTTTTTGTTGTTGTCATGTGTACAATCATGCAGAAGAACATCTCATAAAAGAAACAGGTTTTTCTTCGCACTAGATATAT ATTAGTCGTTGATTAGTCCCTAGTCGCAAGAATGAGATCCCTTGAAGATATCATATGCAAATATAATACACCGTCATACA AGTAACAAGAGTGTTGACTAAATAATGTTTTAATCTCGTCTTGCAAATAAAATCTTCTTGTCAATTAAAAATGATAAGCA GTTACAAGTTTACATAATAATTTTTGTAATGAACATGTCAACATTTTATCAGTGGGAAAAAGAATTAAACACAGTTTGAA AGCATGAGATTTCAACCTGGTATTCTAGGTGTGATCCTCTTAAGTGAAATTTAACATAAGAAGATGCATTCCCTGATATT CATTGGACTAGGTTAGAAAAACATTTTAGGAGAGTGCTAAATGGCACCAATAAAACAATGCAAGAAACACATTTTACGAC ATATTTATGCTTAGAGAAAAAAAACAGAATCTAAATTGGAGATGAAAATTCATTTCGTATCTTTTATCATTTCCCAACAT TTTAAATTCTTTTGAAAGTAACCTTATAAAATGGTTTTTGGCTACCATGAACTACAGAAAATTTGGTTTATAAATTAAAA TGACTACCTTACAAATTAATATTACGACATAAATAGCATATTTTAAATAACATATACCTTTTATATGTCCACACCAATAA AGTTTCATTCAGAATGGAGTGGAAAGAAGAGAGAGAAATGAAGAATTTTTATAGATGATAAAATTGAAAGAGAAGAGGGA GACAAACAAAAATTAAAGGTGAAAATGAAGTTACAATGCAAATGAATTATAGCTCTATCCACACCACAAAGATACCTGCC CATGCTGAATATCATGTTCTGTTGAAAATCTTCAACTGAATTTCATTGATTGAAAAGGTG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0441000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGCAGGAAGTGCTCACATTGTGGAAACATTGGTCACAATTCTAGGACCTGCACATTTTCCAGAGGCGTTGGACTTCG CCTCTTTGGCGTGCAACTAGATATTTCTTCTTCATCACCTTCTCATCATTTTACCATCAAGAAAAGCGTTAGCATGGACT CCTTTCCCTCACCATCCTCTCCATCTTCCTCGTTTTCTTCATCAAGAATAGCCATTTTTGATGATAGAACCTCTATTGGC TATCTATCAGATGGTCTTATAGGTCGACCCCAAGACAGGAAAAAAGGAGTTCCCTGGACAGAGGAGGAGCACAGAATATT CCTTGTTGGACTTGAGAAGCTGGGAAAAGGTGACTGGAGAGGAATCTCTAAAAACTTTGTGACTACAAGAACCCCAACAC AAGTGGCCAGCCATGCTCAGAAGTACTTTCTTCGATTGGCAACTATAGCTAACAAGAAGCGACGTTCAAGCCTCTTTGAC TTGGTTGATAGCAGCAACACCAAGATAGAAGGTTATCAGAAGGATAAGGGGTCTAAATGTGAAGTTGGGAATGATGCCAC TTTGTCATTGATAACTAATTACTTTCAACAAGAAAAAACCAAATCAGATAAGCAAGAAACTTGTGATGATGATCACACAT CTGAAATTGAACCATCTGGTGCAGAACATGAAGCTGTGCCTATCTGGCTACATTCTTCAAATGTGGCAGTACAGAGTTCC CAAAATGCAACAGCACCTGACCTGGAGCTTACTCTTGCAGCACCTAAGGTTATGATGCTGGAACAAAATGAATCATCCCC TGCAGCTCAATTCCTGCTTGGACCAATTACCGTGACTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0441000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGRKCSHCGNIGHNSRTCTFSRGVGLRLFGVQLDISSSSPSHHFTIKKSVSMDSFPSPSSPSSSFSSSRIAIFDDRTSIG YLSDGLIGRPQDRKKGVPWTEEEHRIFLVGLEKLGKGDWRGISKNFVTTRTPTQVASHAQKYFLRLATIANKKRRSSLFD LVDSSNTKIEGYQKDKGSKCEVGNDATLSLITNYFQQEKTKSDKQETCDDDHTSEIEPSGAEHEAVPIWLHSSNVAVQSS QNATAPDLELTLAAPKVMMLEQNESSPAAQFLLGPITVT
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR44191
1 279 279 1.1E-103 –
PANTHER
PTHR44191:SF11
1 279 279 1.1E-103 –
ProSiteProfiles
PS50158
3 18 16 8.532
IPR001878
ProSiteProfiles
PS51294
91 147 57 18.474
IPR017930
SUPERFAMILY
SSF46689
93 147 55 7.9E-18
IPR009057
TIGRFAM
TIGR01557
94 145 52 8.1E-18
IPR006447
SMART
SM00717
95 145 51 2.7E-11
IPR001005
Gene3D
G3DSA:1.10.10.60
97 149 53 2.4E-16 –
Pfam
PF00249
98 142 45 1.0E-11
IPR001005
CDD
cd00167
98 143 46 2.55709E-10
IPR001005
MobiDBLite
mobidb-lite
201 219 19 - –
MobiDBLite
mobidb-lite
201 221 21 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0441000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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