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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0443700 |
Transcript ID | LotjaGi4g1v0443700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Leucine-rich repeat protein kinase family protein; TAIR: AT4G29240.1 Leucine-rich repeat (LRR) family protein; Swiss-Prot: sp|Q9LHF1|LRX4_ARATH Leucine-rich repeat extensin-like protein 4; TrEMBL-Plants: tr|A0A0L9VSW1|A0A0L9VSW1_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0443700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81710524..81712498) extracted from Lotus japonicus Gifu genome v1.2.
GTCAACATCTTCAGTACTGGAGAAGTTGTACAAAGCTAGCTCAGAAGCATTACAGAAAAGAACTCAAAGGAAAATGACAA ATGAAACCAAAACACATTAAAGACCAATTGATCCAAAACAGTGTATCTCTCTCTGTCTCTCTTTAATGTTGCAACCTTTA TTAAGACAACCTTACAACCATCAACATAATCATCCAGGTATCTTCACCTCAAAATGGACAAGACCTTTACTCTGATTTTT CTCCTCTTCCTCTTCCTCTTCCTCCACCTTCCAAATGCAGCAAAATCTGCCATTGGTGTTGGTATTGGAGTTGGTGGTGG TGGGGTTAGTATTGGTGTAGGTGCTGGGAATGGCAATGATGGTAATAATGGTGGATCTTCAGTGCCAAACCAGAACAATG CTTACACAGCTCTTCAGGCATGGAAATCAGCAATCACTGATGACCCACTGAAGATTCTAGACACTTGGGTTGGTCCCAAT GTGTGTTCTTACAAAGGAGTGTTTTGTGAAAATTCCCAAGATGGAATTGCTGAATCATTTGCAACTACTGGTCCTGTTGT TGCAGGAATAGATCTCAACCATGCAAATCTCCTAGGAACTTTTGTCAAAGAGCTTTCTTCACTATCTGAAATAACTCTTC TCCACCTCAACAGTAACAGATTTTCAGGTACAGTTCCTGATTCACTCAGAGAGCTCACTTCCTTAGAAGAATTGGACCTC AGCAACAACCAATTTTCAGGTCCTTTTCCCAATGTTGTTCTATACATGCCAAGTATTATCTACTTGGACCTCAGGTTCAA CTCCTTCTCAGGTTCCATTCCTGAAGCATTGTTTAACAAGAGACTTGATGCAATTTTTCTCAACAACAACCAATTTGGAG GTGAAATTCCACAGAATTTGGGAAACTCCCCTGCCTCTGTGATCAACTTAGCTAACAACAAGTTGAGTGGAGAAATCCCA GTGAGTTTTGGGTTCATGAGTCCAAAGTTGAAGGAGATTCTCTTCCTGAATAACCAGTTAACAGGTTGCATTCCTCAAGG AGTTGGAATCTTCACTGAGATGGAAGTTCTTGATGTGAGCTTCAACTCACTGGTTGGTCATTTGCCAGACACAATCTCCT GCTTGCAAGAGATTGAGGTGCTGAATTTGGAGCATAACAAGCTATCTGGGGAGTTATCTGATGTGGTTTGTTCTTTGAGG AGCTTAATGAATCTAACTGTTGCTTATAACTTTTTTTCTGGGATTAGTCAGCAATGTTCAAGGCTTTTCAATGTGGGGTT TGATTTCTCAGATAACTGCATTCCTGGAAGGAACATGCAGAGACCTCCACCAGAGTGTTCTGTGATCCCAGGTGGTAGTT TGAACTGTCTGAGAATTCCAACTCCAAAACCTCTTGTTTGTGGTTCTCTGGCTTCAAATCTGCGTTCATCATTTCCTTGA TAATGATGTTTTTTTTTCTTTTCCAGTGATTGATGATGCTACTAATTCACTTCATAGTTATACCATGCTAATTTTGTTCA TCATTGATTTGGTATACTATACTAAACTTGCCCCACATGGATAAGGTAAAGCCTGGATTTTGATATGTATTCTATATTTC TATTCTTATGGTGTTAACAACGAGGTGATTTGTGATTTTGTGTCACGAGGCATGTTGTTTGATTTGGTTACTTTGATCTT ACAAGTGTATCTTGGTTTCTTTAGATTGCGCCTTCAATTTCATTCCCTTCTAAATGACAAGGCCTACTTGATTGATTGAG TTGTCACTACTGAAACTTGACAAGACTACAAGGCTTTAGATTACTCAACCAGGCTCACAAGATTACCCAAACTGCTAGGA GATGGCTTTCCAAAATGCCAATTGATAGTTGTCAGACTGTAATTAAGGAGTTGTGGTGGTTTCACTTTAGAGTAGTATTT TTTCAATAGAAAAAACGCATGATGTCATTTTTGTTATGAATTTTGTAATATTAAC
CDS sequence (LotjaGi4g1v0443700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACAAGACCTTTACTCTGATTTTTCTCCTCTTCCTCTTCCTCTTCCTCCACCTTCCAAATGCAGCAAAATCTGCCAT TGGTGTTGGTATTGGAGTTGGTGGTGGTGGGGTTAGTATTGGTGTAGGTGCTGGGAATGGCAATGATGGTAATAATGGTG GATCTTCAGTGCCAAACCAGAACAATGCTTACACAGCTCTTCAGGCATGGAAATCAGCAATCACTGATGACCCACTGAAG ATTCTAGACACTTGGGTTGGTCCCAATGTGTGTTCTTACAAAGGAGTGTTTTGTGAAAATTCCCAAGATGGAATTGCTGA ATCATTTGCAACTACTGGTCCTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTCCTAGGAACTTTTGTCAAAGAGC TTTCTTCACTATCTGAAATAACTCTTCTCCACCTCAACAGTAACAGATTTTCAGGTACAGTTCCTGATTCACTCAGAGAG CTCACTTCCTTAGAAGAATTGGACCTCAGCAACAACCAATTTTCAGGTCCTTTTCCCAATGTTGTTCTATACATGCCAAG TATTATCTACTTGGACCTCAGGTTCAACTCCTTCTCAGGTTCCATTCCTGAAGCATTGTTTAACAAGAGACTTGATGCAA TTTTTCTCAACAACAACCAATTTGGAGGTGAAATTCCACAGAATTTGGGAAACTCCCCTGCCTCTGTGATCAACTTAGCT AACAACAAGTTGAGTGGAGAAATCCCAGTGAGTTTTGGGTTCATGAGTCCAAAGTTGAAGGAGATTCTCTTCCTGAATAA CCAGTTAACAGGTTGCATTCCTCAAGGAGTTGGAATCTTCACTGAGATGGAAGTTCTTGATGTGAGCTTCAACTCACTGG TTGGTCATTTGCCAGACACAATCTCCTGCTTGCAAGAGATTGAGGTGCTGAATTTGGAGCATAACAAGCTATCTGGGGAG TTATCTGATGTGGTTTGTTCTTTGAGGAGCTTAATGAATCTAACTGTTGCTTATAACTTTTTTTCTGGGATTAGTCAGCA ATGTTCAAGGCTTTTCAATGTGGGGTTTGATTTCTCAGATAACTGCATTCCTGGAAGGAACATGCAGAGACCTCCACCAG AGTGTTCTGTGATCCCAGGTGGTAGTTTGAACTGTCTGAGAATTCCAACTCCAAAACCTCTTGTTTGTGGTTCTCTGGCT TCAAATCTGCGTTCATCATTTCCTTGA
Protein sequence (LotjaGi4g1v0443700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKTFTLIFLLFLFLFLHLPNAAKSAIGVGIGVGGGGVSIGVGAGNGNDGNNGGSSVPNQNNAYTALQAWKSAITDDPLK ILDTWVGPNVCSYKGVFCENSQDGIAESFATTGPVVAGIDLNHANLLGTFVKELSSLSEITLLHLNSNRFSGTVPDSLRE LTSLEELDLSNNQFSGPFPNVVLYMPSIIYLDLRFNSFSGSIPEALFNKRLDAIFLNNNQFGGEIPQNLGNSPASVINLA NNKLSGEIPVSFGFMSPKLKEILFLNNQLTGCIPQGVGIFTEMEVLDVSFNSLVGHLPDTISCLQEIEVLNLEHNKLSGE LSDVVCSLRSLMNLTVAYNFFSGISQQCSRLFNVGFDFSDNCIPGRNMQRPPPECSVIPGGSLNCLRIPTPKPLVCGSLA SNLRSSFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
Phobius | 1 | 25 | 25 | - | – | |
Phobius | 1 | 5 | 5 | - | – | |
SignalP_EUK | 1 | 25 | 25 | - | – | |
Phobius | 6 | 17 | 12 | - | – | |
TMHMM | 7 | 29 | 23 | - | – | |
PANTHER | 8 | 401 | 394 | 2.3E-203 | – | |
PANTHER | 8 | 401 | 394 | 2.3E-203 | – | |
Phobius | 18 | 25 | 8 | - | – | |
Phobius | 26 | 408 | 383 | - | – | |
Pfam | 61 | 98 | 38 | 1.0E-5 | ||
Gene3D | 63 | 234 | 172 | 2.2E-38 | ||
SUPERFAMILY | 64 | 353 | 290 | 4.08E-51 | – | |
Pfam | 163 | 180 | 18 | 0.82 | ||
PRINTS | 164 | 177 | 14 | 6.6E-5 | – | |
Gene3D | 235 | 374 | 140 | 6.8E-25 | ||
PRINTS | 304 | 317 | 14 | 6.6E-5 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0443700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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