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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0449000 |
| Transcript ID | LotjaGi4g1v0449000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT5G21222.1 protein kinase family protein; Swiss-Prot: sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protein At5g21222; TrEMBL-Plants: tr|K7KRN3|K7KRN3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0449000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82126189..82130840) extracted from Lotus japonicus Gifu genome v1.2.
ATAAGAATCTCCAGTTTATGCCACACACACACGAAAACGAAACACACTATTGGTTCCTATGCATTCATTACTTACATTAC ATGCAACAACATAACTTCACTGCTAATGTTCAAACCCAACTCTCCCTAGAGGCTTCTCAACTGTACAAGGTACCACTTCA ACTCTACCATAATGTCATCAACTATGCAGCATGCACTATAGTTTGCTTCTGAGTCTTGATAGTGTGTGTTATTTACACTT CATTTGGCAAAATTTGATGTTTGATCAGAGGTAACAAACTTAGATACCTCTCTCTAGGATTTGGAATTGGGATCTAGTTG CTAGTTAGCATGTTTGGATCAATTTCTATTTCATTAGAATCAATTTTAGCACTAAGAAGCTACTCACACAAGCCTCTCCC CAAAATTGATTTTTGTGTTCAGAATCAGATTAAGAATGACTTCCAAACATGCATACTATTTGTTGGGACTTGGGACTCTT TCAATTGTTGTTAAAACTTGGGCTCAGATGTTTGGCTAATGGTGATGTGTTCTATAATCAATTTGGGAATTCATGATGTG TTCTATCACTAGAGTGTGCTAAGTAAAAATTGGATGATTACTTTGTTCATGTTGTATTACTGTTGCTATGAATAGCAAAT GAGAGAGATGTATAAATAAGATGCCATAGTCCCCATGATCCACTTCTACGTTGAGTTTGTGAAGTTCTCACCCAGAGCAT GTAAATGCCTAGTTACTGGTTTGGGGTGTGCTTAGGTAAATAGCTTGATTAAGCAATTATGGCAATAGTCTGTTATTCAT AAGCTAATTTGAGAAGATTATTCAAATAAGCTCGAGCTAGCTTAGATATAGGTATAAGTGCTTGTTTATAAGCAACCTAA GCAGTTTGAGAAAATAAGCTCAAAACAACTTAGGCAGGTCACATGCTATTTTCTTAAGCTTACCCAACATAAGCATAAGA AAAGCTCAAAGAAGCTCTTCCAAACACGGTCTTTACTCGTGCCTTTTTACTAGGAATTGGTGAGTTGGTGACAGTGTACT GCTTTTTTTAAAGTAATGATGAATTCTAAAGCTAATGTGAGTGACTATGGGGTTTGTGTTTGGAATTTAAGGCATAATTG CTCCATTTTACAACTAGATTTTCCTGTGACCTTTTATAAGTACAGTAGCATAGATTCTCCTTGCTCTAAGAGTTTTGATA GTAGAAGTAGATGCACTTAGTACTCTATATCAATTGGAGCCTCTATGTGAGCAACTAGATAGCATTTATTCCGACTAATC TCCAACTTGTCCAAGACTAGTTTTGTCATTTCTAAATGCCATGGGTTCTTTTAGTTGATTATTGTGTTTTCAAATATACT AGTTGATGACAACGTCCTCTTGTTAGAACAATCCAGGATGAGGTATCTCCTTATTATGATGCATGGAATATAGCGAGCAA TCTTGCTAGGTCTTGCAGCCACGGTATGATGGCAGTTTGCTGAGGACTTCACGAATCTGATCAAGTATATTCACCCTCAT GGACCGCAGCCAGAAGGGTGCCCTAATGAGTAATGAAAGCGCTAAAGACTTGTCCATCTTGGTATTGTGAACACTTTATT TTTCATGTTTGATTTCAGGAAATTATTCATTTTTGAATGATTTGATCTTAGTAGCAGTAGCACTTTATTGTAGCAGACAA ACAAAAAGAGTCTGAAGAAAAAATTCCCCCATATCATATCATACCAAATAGATCTAAATTATTGCACACAGTTTACTTAG TTAATGAATCATTTATGTCAGACCAAGTTCATATTTGTACTAGTTAACTATGTCGATTAGATTTTTGTTTTGCATAATCT ATGTTCTTATGCTAAATCAGTACATTTGCACTTGTCTGACACATGCATAGAAGATTAATTCAAGTTGCTCTAAGTAATGG CCTAAAATTATTTGATCTTTGATTCATTAGTTAAGTGCTGAATAGTGATGAGTGTTATGTGTTAAAGGTAAATACCAAAA TTTATGGATATTTCACTCATTGTTTCAACTTTTGGCAATTCTAAAACAGAAACTGCAGCAGTACAAGAGTGAAAAATCAA GCTTAAGCTCTACTCCAGATGAAACAAGCAATCAATCCCAGTGTCTTACCTGTATGGGGAGAAACAGTTGTCAAACAGTT CTTTCAAGAACAAAACTGATGAATACTTTGATTGGAAGAGGGAAGCCACATGAAGCTCAAGCCATCTTCAATAATTTGAC TGAAGAAGGACATAGGCCAACTCTTATAACATACACAACTCTTGTGGCTGCGCTAACGCGCCTAAAGCATTTCAAGTCCA TTTCTTCACTTCTTTCCAAAATTGAAGAGAATGGAATGAAGCCAGATTCGATACTTTTCAACGCCATGATTAACGCTTTT TCTGATTCCGGCAAGGTGGACAAAGCCATGAAAATCTTTGAGAAAATGAAAGGTTATGGATGCAAACCAACCACTAGTAC TTTCAATACCCTCATCAAAGGATTTGGAATCGCTGGCAGGCCTGATGAAGCTATGAGATTGCTAGAGAAGATGACGGGTC CGGAGGAAAATGTGAAACCGAATGAGAGAACATATAATATTCTCATCCAAGCCTGGTGTACCAGGAAGAAAGTTGAAGAG GCATTGAGTGTTGTGCATAAAATGGTGGCGTTTGGCTTGCAGCCAGACGTTGTCACTTACAACACACTGGCAAGAGCACT TGCTCAGAACGGTGAGACAGAGAAGGCTGAAAGGTTGCTATTGAAAATGCAGTACAATAAAGTGAGGCCTAATGAAAGAA CTTGCGGAATCATAATCAGCGGTTATTGTAAGGAAGGTAACATGACAGAAGCCTTGAGGTTTCTATACAAAATGAAGGAG CTTGGAGTGCATCCAACTCCAGTAATCTTTAACTCCCTTATCAAAGGATATTTAGACATTACAGACACAAATGGAGTAGA TGAGGTGAGTTCTGATCTCTTGACACTTTTCATAAGATAATTTTTTTTTAAAGCATTAATACCCCACTATTATGTTACAC TGAATCACGAGTTCAAGTCCTGAAAACAGCCTCTTGTGTAAAAAACAAGGTAAGACTGCGTACAATAGACATGTGTTCAG AGCCTTCCCCAGACCCCGCGCATAGTAGTATCTTTAATGCACCGGGCTGCCCTTTATTATGACACACTGAAGGAACATTA CAATAATTGCAAGATCGAAAGTCCTAGATAGGAACTATCTGTTGCTGATTTGTGCTTGTATCCTGTCTATGTTATTATGA AGTATCTAATACTATGATAAAAATTGCAACTTACAAATGAAAATTGGTCAGGCACTGACATTGATGGAAGAATTTGGAAC CAAACCAGATGTGGTGACATTTAGCACCATCATGAATGCATGGAGTTCAGAAGGACTAATGGACAATTGTGAGGAGATAT TTAACGACATGGTGAAGGCTGGGATAGAACCCGACATTCACGCTTATAGCATCCTCGCAAAAGGCTACGTGCGTTCCGGA CAGCCGGGTAAAGCAGAGGCTCTTCTGACTTCCATGAGAAAATATGGTTTACAGCCAAATGTTGTGATCTTCACTACCAT CATCAGTGGATGGTGTACTGCTGGTAAAATGGACCGCGCGGTTAGGCTTCATGAGAAGATGCATGAAATGGGAATTCCCT CAAATTTGAAAACTTATGAAACTCTAATGTGGGGGTACGGAGAAGCAAAACAACCATGGAAAGCAGAAGAGTTGCTTGTT ACCATGGAAGAGAGGGGTGTAGCTCCTGAAATGTCCACTATGCAACTGGTTGCTGACGCTTGGCGCGCCATTGGTTTCTT AGAAGATGCCAAAAGAATTATAAATGGTTCACAAGAAGAATCTGAGCTAGATAAGAACTTTGAGTCTAATGGTAATACAC AACTCTTCCAGAAACCCAATGCTTCTGAGTCTAATGTGCTCCCAGTACCTGGTGTAGTGGTAGCTCATCCACAAAGAGTA ACTAATGGCAACATAAGAAGCCAAATGATAGTCAAAGCATGTGAAAACATGAGGAATGCTACCACATCCATGGTTTTTGT TCGCGCAAATTCATACCGGGTACAACCAATGATTGTTAGTAGGCAGCAGGTTCATAATCAGATTATAAGGCCCCTTGATT GTTGCAGGGTAGTGTCAATACTTTGTTGAGGTTCATGCCGAATTGCTGATGAGTTCTTTTGTAGATATCATTCATGGACT TCAGAAATCAGAACAAAACACTTGCAGTCTTTGACAAAATGCTGGTGTAAATTGCATTTGTTGAACTATTGCTACTGCTT GTGAATGAAATGCATAGGCTGCATGCCTACAGAATTCATTGTCATTGATTTGTGCTTTTGTATAGATTGCATATTGCTGG GAAATCATGTCTGTATTCGAACTTGTAAGGAAAACACCGAAAAACATGTAATATAGTCAATACTTATACCTATTTCACAC CTATGAGGCTGTGACTGTATGGCCCTCTTTATTTTCACCACTCAAAATAGTTTGCCAACACAAGTATTTGTACAAAGAAT TGAACTTGAAAAACATTACTTGACAAGTGATTAATCATAACCTGTTTCTTTAGTGGTTTGCAATAGACAGGCCTGTTTGG TTACTAATCGGA
CDS sequence (LotjaGi4g1v0449000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGACCGCAGCCAGAAGGGTGCCCTAATGAGTAATGAAAGCGCTAAAGACTTGTCCATCTTGAAACTGCAGCAGTACAA GAGTGAAAAATCAAGCTTAAGCTCTACTCCAGATGAAACAAGCAATCAATCCCAGTGTCTTACCTGTATGGGGAGAAACA GTTGTCAAACAGTTCTTTCAAGAACAAAACTGATGAATACTTTGATTGGAAGAGGGAAGCCACATGAAGCTCAAGCCATC TTCAATAATTTGACTGAAGAAGGACATAGGCCAACTCTTATAACATACACAACTCTTGTGGCTGCGCTAACGCGCCTAAA GCATTTCAAGTCCATTTCTTCACTTCTTTCCAAAATTGAAGAGAATGGAATGAAGCCAGATTCGATACTTTTCAACGCCA TGATTAACGCTTTTTCTGATTCCGGCAAGGTGGACAAAGCCATGAAAATCTTTGAGAAAATGAAAGGTTATGGATGCAAA CCAACCACTAGTACTTTCAATACCCTCATCAAAGGATTTGGAATCGCTGGCAGGCCTGATGAAGCTATGAGATTGCTAGA GAAGATGACGGGTCCGGAGGAAAATGTGAAACCGAATGAGAGAACATATAATATTCTCATCCAAGCCTGGTGTACCAGGA AGAAAGTTGAAGAGGCATTGAGTGTTGTGCATAAAATGGTGGCGTTTGGCTTGCAGCCAGACGTTGTCACTTACAACACA CTGGCAAGAGCACTTGCTCAGAACGGTGAGACAGAGAAGGCTGAAAGGTTGCTATTGAAAATGCAGTACAATAAAGTGAG GCCTAATGAAAGAACTTGCGGAATCATAATCAGCGGTTATTGTAAGGAAGGTAACATGACAGAAGCCTTGAGGTTTCTAT ACAAAATGAAGGAGCTTGGAGTGCATCCAACTCCAGTAATCTTTAACTCCCTTATCAAAGGATATTTAGACATTACAGAC ACAAATGGAGTAGATGAGGCACTGACATTGATGGAAGAATTTGGAACCAAACCAGATGTGGTGACATTTAGCACCATCAT GAATGCATGGAGTTCAGAAGGACTAATGGACAATTGTGAGGAGATATTTAACGACATGGTGAAGGCTGGGATAGAACCCG ACATTCACGCTTATAGCATCCTCGCAAAAGGCTACGTGCGTTCCGGACAGCCGGGTAAAGCAGAGGCTCTTCTGACTTCC ATGAGAAAATATGGTTTACAGCCAAATGTTGTGATCTTCACTACCATCATCAGTGGATGGTGTACTGCTGGTAAAATGGA CCGCGCGGTTAGGCTTCATGAGAAGATGCATGAAATGGGAATTCCCTCAAATTTGAAAACTTATGAAACTCTAATGTGGG GGTACGGAGAAGCAAAACAACCATGGAAAGCAGAAGAGTTGCTTGTTACCATGGAAGAGAGGGGTGTAGCTCCTGAAATG TCCACTATGCAACTGGTTGCTGACGCTTGGCGCGCCATTGGTTTCTTAGAAGATGCCAAAAGAATTATAAATGGTTCACA AGAAGAATCTGAGCTAGATAAGAACTTTGAGTCTAATGGTAATACACAACTCTTCCAGAAACCCAATGCTTCTGAGTCTA ATGTGCTCCCAGTACCTGGTGTAGTGGTAGCTCATCCACAAAGAGTAACTAATGGCAACATAAGAAGCCAAATGATAGTC AAAGCATGTGAAAACATGAGGAATGCTACCACATCCATGGTTTTTGTTCGCGCAAATTCATACCGGGTACAACCAATGAT TGTTAGTAGGCAGCAGGTTCATAATCAGATTATAAGGCCCCTTGATTGTTGCAGGGTAGTGTCAATACTTTGTTGA
Protein sequence (LotjaGi4g1v0449000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRSQKGALMSNESAKDLSILKLQQYKSEKSSLSSTPDETSNQSQCLTCMGRNSCQTVLSRTKLMNTLIGRGKPHEAQAI FNNLTEEGHRPTLITYTTLVAALTRLKHFKSISSLLSKIEENGMKPDSILFNAMINAFSDSGKVDKAMKIFEKMKGYGCK PTTSTFNTLIKGFGIAGRPDEAMRLLEKMTGPEENVKPNERTYNILIQAWCTRKKVEEALSVVHKMVAFGLQPDVVTYNT LARALAQNGETEKAERLLLKMQYNKVRPNERTCGIIISGYCKEGNMTEALRFLYKMKELGVHPTPVIFNSLIKGYLDITD TNGVDEALTLMEEFGTKPDVVTFSTIMNAWSSEGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRSGQPGKAEALLTS MRKYGLQPNVVIFTTIISGWCTAGKMDRAVRLHEKMHEMGIPSNLKTYETLMWGYGEAKQPWKAEELLVTMEERGVAPEM STMQLVADAWRAIGFLEDAKRIINGSQEESELDKNFESNGNTQLFQKPNASESNVLPVPGVVVAHPQRVTNGNIRSQMIV KACENMRNATTSMVFVRANSYRVQPMIVSRQQVHNQIIRPLDCCRVVSILC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 57 | 91 | 35 | 8.002 | ||
| PANTHER | 59 | 189 | 131 | 4.9E-111 | – | |
| Gene3D | 59 | 228 | 170 | 2.7E-46 | ||
| ProSiteProfiles | 92 | 126 | 35 | 9.142 | ||
| Pfam | 94 | 123 | 30 | 0.94 | ||
| TIGRFAM | 94 | 128 | 35 | 0.0018 | ||
| Pfam | 126 | 173 | 48 | 2.6E-15 | ||
| ProSiteProfiles | 127 | 161 | 35 | 13.526 | ||
| TIGRFAM | 130 | 162 | 33 | 3.2E-9 | ||
| ProSiteProfiles | 162 | 192 | 31 | 9.536 | ||
| TIGRFAM | 165 | 189 | 25 | 8.2E-6 | ||
| PANTHER | 177 | 320 | 144 | 4.9E-111 | – | |
| Pfam | 198 | 246 | 49 | 1.5E-13 | ||
| ProSiteProfiles | 199 | 233 | 35 | 12.178 | ||
| TIGRFAM | 202 | 235 | 34 | 4.5E-8 | ||
| SUPERFAMILY | 202 | 298 | 97 | 1.33E-5 | ||
| Gene3D | 229 | 321 | 93 | 1.2E-27 | ||
| ProSiteProfiles | 234 | 268 | 35 | 11.871 | ||
| TIGRFAM | 236 | 270 | 35 | 1.4E-6 | ||
| ProSiteProfiles | 269 | 303 | 35 | 12.364 | ||
| TIGRFAM | 272 | 304 | 33 | 1.9E-8 | ||
| Pfam | 272 | 315 | 44 | 4.9E-9 | ||
| PANTHER | 300 | 511 | 212 | 4.9E-111 | – | |
| ProSiteProfiles | 304 | 338 | 35 | 7.991 | ||
| Gene3D | 322 | 535 | 214 | 1.3E-45 | ||
| Pfam | 338 | 386 | 49 | 8.8E-13 | ||
| ProSiteProfiles | 339 | 373 | 35 | 11.74 | ||
| TIGRFAM | 341 | 375 | 35 | 7.5E-7 | ||
| ProSiteProfiles | 374 | 408 | 35 | 11.509 | ||
| TIGRFAM | 377 | 410 | 34 | 2.8E-6 | ||
| Pfam | 408 | 454 | 47 | 8.4E-12 | ||
| ProSiteProfiles | 409 | 443 | 35 | 11.553 | ||
| TIGRFAM | 411 | 444 | 34 | 4.9E-6 | ||
| ProSiteProfiles | 444 | 478 | 35 | 10.479 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0449000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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