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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0453000 |
| Transcript ID | LotjaGi4g1v0453000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cleavage stimulation factor subunit 2; TAIR: AT1G73840.1 hydroxyproline-rich glycoprotein family protein; Swiss-Prot: sp|Q9M9G6|CTF64_ARATH Cleavage stimulating factor 64; TrEMBL-Plants: tr|C6T790|C6T790_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0453000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82508762..82512316) extracted from Lotus japonicus Gifu genome v1.2.
ATTTTGAGTTTGCATCTTTCTGGTCTCTGCAATGGCCGGGAAACAAGTCAGCGGCGGCGGCGGCGGCGGCGGTGAGGGGT TAACGGCGAACCTCGCCGGAATGTCAAAGAATCAGCTCTACGATATCATGTCTCAGATGAAGGCACGTCGTTACTTCCTC TTTGTCACTCTTCTTCATATTCACTCACGCACCAATCACATGCTAACCAGTTTCCTTTGTTTCTCATCAGAATCTCATCG AACAGAATCAACAACAAGCGAGGCAGATCCTCATCCAGAACCCTATGTTAACCAAAGCGCTTTTCCAGGTTTGTAGGGTT TTTCTTTTTCTTTCTTTGCGTAGTTCTTCCTCTTTTGGCGCTAAATTTGATGCTGCAAATTTGGGTTGTGGAAATTCTGA GTTTCAGTTTGTTACATTGATGAATCTGTCTGTAAACCTATTTGATTGTTACAATTGTGTAGATATTTTATAGTGATTGG ATTTAGATTAGAGGAGCTATTTTTCTCTAATGCTGCATGATTTTGCCATAAGGTGAAACCCTAAATGTAATATTTGATTT CATGGATAACTACAGTTATCTAACTGCTACATTCAATTTTCTTAGAAGCTGGTGTATAGATTAGAAAGTGGTCCAACCCT TACTCTTAGAGTGTGTTTGTGAGTTGGGTTTTGGAGGCCAGAAGGGAAGATGGAGAGGCTTATGAGAAGCCACCCCTTGT TTGGGAGATTTTAATAAGGGGGGAGGCTTTTGGGTATTTCTAAAATCCTCCAAAACCTTCTCGTACTTATATTTTTTAGT TACCCCAAATTGGTGGGTTTTCTTCTCCCAAATAAGTGAAAGACTTACCCTCCTTCCCTCTCTCTCTCTTGCCCTCCACT CCCCTTCCCCTCCCCTAAAACTCGCAAAGCATCATATCTAATCTAACCGCTAATGATGTTTCCCTTGTATATGCCCTTGA GGTGATGAAAATTTGCTTTTTGCTCAGACCTTATTATTGGTATCTAAGAATGACAGTTTATTTTTTGTGCATATTGAGAT TTTTAGGAGTCCCTGATGTTTCTTGTACGTGTATCTATTTCTTGGACATCCTTTCAGTTATACAGGGATCAAAAAGATTT CATATCTGTATATAGTCTTGCTTGTGTAAAACTATAATTTTTCAGCATTATTCTAGTTGTCTTACTCAAACATTAATATA TGCTGGTGCATGAGAATAGAGTCATTTATTTTTGGGGAGAGATTTTTATAAAATGTTCTATTCTGAATCCTTTAATGAAT AAAGAAGCGTGTGTTGATATGGCTTTGTTTCTAACTAACCTCATTATTTATCTGAGGGGATTCAGCCATATTAGTTATTT GTTTAACTTTGTCCTTTTTGTTTTGTATACTCAGGCACAAATTATGCTTGGAATGGTGCAATCACCTCAAGTGGTATGCT TTTTACTTCATTTTTTTACAACCTTCCATTGCTAGAAGTTTGCATGCTAAAAAATGTTTTCTTCTAGGTTCCAAAAGTTC AGCCGATGGTTCCACAGAACAATCAGTCAGTACAGTCAGCACAACCGCCTAAAGTTCAGCCTGTTCCATTATTGCCTGGG CAAGGTGGTGCACAGGATCAAGCTGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAAAACCAACCTTCAGTTCC AGTTTCTTATGCCGCTACTCCTGCAATGAGTCATCAATCTCCGCCCATGGCTGGACATTCTTTGCAGATGCCACAACAGC CTAAAGGACATCTAGCACCCCAAGCAGCTCCGGCTTCTCTTCCACAATCTTCACAACTTCCAAACATTCCTCCACCTTCT CTTCATTCATCATCACAGCCACATCATCCAACTCAAATGCAAACTGCATCAAGTCAGTTGCAGCAACCATTGCAGGCACC TGGATTTCCACATATGCCTTTGCAACCACCTCTGCCACCACAGCTCAGACCACCTTCAGCGTCGTCCTTCCATCCCCAGT ATCCCCCACAAATGGGGTCCAATTTAGGTTTTCAACACGCTGGTGCTTCTCACAATCTTCAGCAATCTATGTTTCATGTA AGCTGAATATTTCAGTTTCAAATCAAAGATTTAGTGGTGTGTCAAAATGTAACAATAGTGTCTGTTGATGAAATTTTCAG CCAGGTGCAAAACCTCCTGCTAGTGTTGGATCCGCGTTCACCCAAGGGCAACCTCCACTTCCAAGTCAGCAATCATCTCA GTCACCTTATCCGGTATGCTTAGCTACAACTGATGGTTTAGATATAAACCGTGTTGGTACTGTGAATTTTATAGTAATGG TTAGACTCTATGACACCTGCATTATGTTAGGAACTTGGTATTTTATTAGAAAGAATAGGTAAAATCCCCCTAATTAAGGT TTTATGGATCTTCTAGGATATGCACCTCCTTACCCTAAGGCTTCAAGTCCCTCTCAAATACGTTGATTAACAGTGAGAGA CTGATGAAAGAAGCTATGTTTTCTATCTTAGAGCTCCTCAGATAATTTTAAAAATCTATTTTTTTTACAAAATTTAGAGT TAACAGGTTTCTCTACACTTTAAAGACATTGTGTATTTTTCAGATATACTCTATTTCTGTCAGTTATGTGGATCCTGTTT TGACACAGCTGTACAAAATTTATTCCTGACACATTATCATTGCTCTGTTTGAATTTTACAATTGAGGTACTTAGCTAGTT TTTGTTAAACGATGTCCATTTGATCTAAACCCAAGTTGACTTTGGTGATTTGAGTGATGGAAATAAAGCTAAACAACATG AATGTAGAAGCAGTATCGTCCATGTACTCTGTGCTTTATAGTAATTGGTTATTCAGATGCTAAGTCATGCCATACTTGCT TGTAGGTTGGAAATATGCCTTTTGGGCATGATTTTGGCAATCAAGGTGGAAATGCAATGCAAGTTGATAGAGTGTCTAGG ATGCATGGTGGTCACTCAGAAAACTTAGCACAGCTCTCTGGTCCTCTGGGGCCACCATCTTTAGTTTCTGGTCAGATGGG TGCTGCTAATCAGCCTCTTCGGCCTCCTGGGGTAATTCTTGTGAATTAACATTAGTTTGTTGATTAATTTCTGCAGTCTG TTGACATCCTCCTCTTTGTGTAAATACAGTTGACACCAGATATGGAGAAGGCACTGCTTCAGCAGGTCATGAGTCTCACG CCCGAGCAGATAAATCACCTGCCCCCAGAACAAAGAAATCAAGTGCTGCAGCTGCAACAGATGTTGCGTCAATGATGCAA TGTGTATATTATAAACTAAGAAAGTTAGGCATGCTTAATCCTTCCAATTTAGCATAAGGTTATTATTCTTTTACGATGAG GTTTTGTGGAAGTTGATACAGAATTCTTGTGTAACAAATTGTAGACCTTTATTATTATTGTTGATTTTGGCACCAATTAA ATCATATAGGCCTTTGTTCTACTTTTACGGAAAACCAAAACTGTCTTTCCCAACTCCGTAACCCTTTCCGTGTGATAATA ATGATAATTCGGTGCTGAATTTATATACTCTCCAC
CDS sequence (LotjaGi4g1v0453000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGGGAAACAAGTCAGCGGCGGCGGCGGCGGCGGCGGTGAGGGGTTAACGGCGAACCTCGCCGGAATGTCAAAGAA TCAGCTCTACGATATCATGTCTCAGATGAAGAATCTCATCGAACAGAATCAACAACAAGCGAGGCAGATCCTCATCCAGA ACCCTATGTTAACCAAAGCGCTTTTCCAGGCACAAATTATGCTTGGAATGGTGCAATCACCTCAAGTGGTTCCAAAAGTT CAGCCGATGGTTCCACAGAACAATCAGTCAGTACAGTCAGCACAACCGCCTAAAGTTCAGCCTGTTCCATTATTGCCTGG GCAAGGTGGTGCACAGGATCAAGCTGGTGTATCTCAAACCCAAATTCCTCTGAGGAAACACCAAAACCAACCTTCAGTTC CAGTTTCTTATGCCGCTACTCCTGCAATGAGTCATCAATCTCCGCCCATGGCTGGACATTCTTTGCAGATGCCACAACAG CCTAAAGGACATCTAGCACCCCAAGCAGCTCCGGCTTCTCTTCCACAATCTTCACAACTTCCAAACATTCCTCCACCTTC TCTTCATTCATCATCACAGCCACATCATCCAACTCAAATGCAAACTGCATCAAGTCAGTTGCAGCAACCATTGCAGGCAC CTGGATTTCCACATATGCCTTTGCAACCACCTCTGCCACCACAGCTCAGACCACCTTCAGCGTCGTCCTTCCATCCCCAG TATCCCCCACAAATGGGGTCCAATTTAGGTTTTCAACACGCTGGTGCTTCTCACAATCTTCAGCAATCTATGTTTCATCC AGGTGCAAAACCTCCTGCTAGTGTTGGATCCGCGTTCACCCAAGGGCAACCTCCACTTCCAAGTCAGCAATCATCTCAGT CACCTTATCCGGTTGGAAATATGCCTTTTGGGCATGATTTTGGCAATCAAGGTGGAAATGCAATGCAAGTTGATAGAGTG TCTAGGATGCATGGTGGTCACTCAGAAAACTTAGCACAGCTCTCTGGTCCTCTGGGGCCACCATCTTTAGTTTCTGGTCA GATGGGTGCTGCTAATCAGCCTCTTCGGCCTCCTGGGTTGACACCAGATATGGAGAAGGCACTGCTTCAGCAGGTCATGA GTCTCACGCCCGAGCAGATAAATCACCTGCCCCCAGAACAAAGAAATCAAGTGCTGCAGCTGCAACAGATGTTGCGTCAA TGA
Protein sequence (LotjaGi4g1v0453000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGKQVSGGGGGGGEGLTANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQSPQVVPKV QPMVPQNNQSVQSAQPPKVQPVPLLPGQGGAQDQAGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQ PKGHLAPQAAPASLPQSSQLPNIPPPSLHSSSQPHHPTQMQTASSQLQQPLQAPGFPHMPLQPPLPPQLRPPSASSFHPQ YPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGQPPLPSQQSSQSPYPVGNMPFGHDFGNQGGNAMQVDRV SRMHGGHSENLAQLSGPLGPPSLVSGQMGAANQPLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 400 | 400 | 1.1E-155 | – | |
| Pfam | 17 | 77 | 61 | 1.4E-19 | ||
| MobiDBLite | 87 | 313 | 227 | - | – | |
| MobiDBLite | 112 | 154 | 43 | - | – | |
| MobiDBLite | 192 | 212 | 21 | - | – | |
| MobiDBLite | 216 | 238 | 23 | - | – | |
| MobiDBLite | 239 | 264 | 26 | - | – | |
| MobiDBLite | 276 | 298 | 23 | - | – | |
| MobiDBLite | 327 | 356 | 30 | - | – | |
| Gene3D | 361 | 400 | 40 | 3.9E-9 | ||
| Pfam | 366 | 400 | 35 | 1.4E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA 3'-end processing | Any process involved in forming the mature 3' end of an mRNA molecule. |
Expression pattern of LotjaGi4g1v0453000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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