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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0456400 |
Transcript ID | LotjaGi4g1v0456400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Nudix hydrolase-like protein; TAIR: AT2G01670.1 nudix hydrolase homolog 17; Swiss-Prot: sp|Q9ZU95|NUD17_ARATH Nudix hydrolase 17, mitochondrial; TrEMBL-Plants: tr|I3S2L4|I3S2L4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0456400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82774030..82776022) extracted from Lotus japonicus Gifu genome v1.2.
ATACGCGTTTGATATGTTAAGCTGCTGGCACCACACGCCCAAAATTATCTAAGTAGTTTTCTATATATAGCTTCCTCCCT CACTCTTTCTCTCCACCCTCCATTCTTTAACATCACCAACAAATCAAAGAGATATATATTGCAATCGCCCTAATTAGTTC ACCCTTTATCCTTTCCTCTCTAAACTCTTTATATTTAATTTCATTCAATTTTGTGTCTCTGCTGTGTGTGAAATTTTTCA TTCTTCAAAACATGGTTTGCTTGGTATCACGCTCAGGAAGGGAGTTGCAAAGATACAACAACATGGGTGGCCGCCAAGTA GTCGGGTGAGTCTTAATTAGACGTGTGTGTAAAACTTTTTGCATTAATCGTAATAACTATTAAACTCGAGAAATATAGAA CAATTTAATTTTTTCTCATCTGTGGGTTAAGTAAATTTCAATAGATTGGTAGGTGAATGGTGGCTCCCAATAGTACACAT TCATTGAAAATGGTCTTTCTTTACTGCAAATTGATAACTCTGTCATTTGTTTAATATATTGCATTCACATTTGTACATTG GCCTCACAAATTGACTTAGCTATTGTAATGTCTTTGCGCAGATGTATACCTTATAGATATAAAGAAGACATAGATGGTAA CATGAGCAACGAATCGGAAGTACTAGTGGTTAGTTCACAAAAAGGTCAAGGATTGATGTTTCCCAAGGTACTTAACTTTT TTATGCTCATTGCTCATGACTAATTCAATTTGAATTTAATTTTTGGTATATAACTGTGTTATGTCAGGACTTATTCGAAA ATTACAATAAAACAAAAATTATGGTTGACAAAAGCAATTTTCCTAAGCTTTTGCTTATGCACACTATGGTTTTTGATTCA CCATGCTTTTCAAATGAGTTTTCGAGTATGCACCACATATTTGTTGTTTCGTACAAAATTAACTAGACCTATATGGATGT TTGCAACTTGAACATTATTGCATTATGTGAAAGATAATACAACATTGACTAATGTCCTATTAATTTATATGATCTCAGGG AGGATGGGAAATTGATGAATCTGTAGAAGAAGCAGCTATCAGGGAATCCCTTGAAGAAGCTGGAGTCATAGGAACCGTTG AGGTACTTGATGTTTTCTGAACTTTTATCTAATATTTTCTTTTGAATGTCAAACAAATCTAAAAAAATTGGTTTAAAATG AAATTGAAATATAATTTGATATTAATTTTGCAGGGTGAATTGGGCCAATGGAATTTCATTAGCAAAAGATATGGCATATA TTATGAAGGGCACATGTTCCCATTGTTTGTGAAGGAACAGCTTGATCAGTGGCCTGAGAAGAATCTTCGAAGAAGAGTGT GGGTAAGTTTAGACACTAATCTTAACTTACATGTTAATTATATCAATTTAAACATGCTTATATTATTTGAAAATTTATCT GATTTTCTTTTTTATCCCTTTCTGTAGATGACAGTTGCTCAAGCTAGAGAAGCTTGTCAGCATTGGTGGATGAAAGAAGC ATTGGACATTTTGGTTCAACGACTCGTTTCTTCACAACAACAGAAAAAGAGATATAGCATTTGTTGATTCTTTTAATTAG TTTATAGAGAACTCAACTTTAGTTTATACAAAGAAAATTGTGGGTACTTTGTTTCTTTGTAAGTTGAAGATTATAGAGAG ATTAACTAGAGAGAGAAACAGGAATTGTAAAGAAAGGTAGATCAACTGATCAAATTGCATTTTGTTTTGCAATTGCAATC ATACACACTCATAGTGCTAAATAATACCCAAATATATTCTCGCCATTCACCATCACAATATCATTTCAGTTTATATCATT GTTATTTCTTGTGTATAATCCCAAACTCTTAATATGATATCCATAATTATATTGTGCCATTTAAGAGAGACTTATTAGAT AGTCAAAACGATCAACATATTTTTGTAAAAATGATAAGGAGTGTTAGTATTGCAAAATTTGATGAAAGGTTGG
CDS sequence (LotjaGi4g1v0456400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTGCTTGGTATCACGCTCAGGAAGGGAGTTGCAAAGATACAACAACATGGGTGGCCGCCAAGTAGTCGGATGTAT ACCTTATAGATATAAAGAAGACATAGATGGTAACATGAGCAACGAATCGGAAGTACTAGTGGTTAGTTCACAAAAAGGTC AAGGATTGATGTTTCCCAAGGGAGGATGGGAAATTGATGAATCTGTAGAAGAAGCAGCTATCAGGGAATCCCTTGAAGAA GCTGGAGTCATAGGAACCGTTGAGGGTGAATTGGGCCAATGGAATTTCATTAGCAAAAGATATGGCATATATTATGAAGG GCACATGTTCCCATTGTTTGTGAAGGAACAGCTTGATCAGTGGCCTGAGAAGAATCTTCGAAGAAGAGTGTGGATGACAG TTGCTCAAGCTAGAGAAGCTTGTCAGCATTGGTGGATGAAAGAAGCATTGGACATTTTGGTTCAACGACTCGTTTCTTCA CAACAACAGAAAAAGAGATATAGCATTTGTTGA
Protein sequence (LotjaGi4g1v0456400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVCLVSRSGRELQRYNNMGGRQVVGCIPYRYKEDIDGNMSNESEVLVVSSQKGQGLMFPKGGWEIDESVEEAAIRESLEE AGVIGTVEGELGQWNFISKRYGIYYEGHMFPLFVKEQLDQWPEKNLRRRVWMTVAQAREACQHWWMKEALDILVQRLVSS QQQKKRYSIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 164 | 164 | 2.9E-80 | – | |
PANTHER | 1 | 164 | 164 | 2.9E-80 | – | |
Gene3D | 12 | 155 | 144 | 4.8E-28 | – | |
SUPERFAMILY | 14 | 156 | 143 | 1.49E-22 | ||
ProSiteProfiles | 19 | 154 | 136 | 14.088 | ||
CDD | 22 | 147 | 126 | 3.2381E-44 | – | |
Pfam | 41 | 149 | 109 | 1.8E-11 | ||
ProSitePatterns | 61 | 82 | 22 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0456400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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