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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0458200 |
| Transcript ID | LotjaGi4g1v0458200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT3G23330.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330; TrEMBL-Plants: tr|G7LBG4|G7LBG4_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0458200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:82930318..82935451) extracted from Lotus japonicus Gifu genome v1.2.
CTTTAGGAGGGAAAACGCAACAGGTGTTGGTGATGGTGACGAAAGCAATGAGTTCCATACAAGACGCGATCACACGCATT CTCAGAAACCCAAACACCGTCACTTCCACCCACCACGCCAAGCAACTCCATGCTTACATTCTGAAGACGAGAGGAACACT TCACTCCGACAACTCCCTCGTACTCTCACTCTACTCCAACCTCAACCTCCTCCACCACTCCCTCCTCCTCTTCCGCTCCC TCCCCTCTCCTCCGCCACCTCTAGCATGGTCCTCCCTCATCAAATGCTACACCTCTCACTCCCTCTATCACCTCTCCTTC TCTTCCTTCAATGCCATGCGCGCTCTGGGAATCTCCCCGACCCGCCACTTCTTCCCTTCCCTCCTCAAAGCTTCCACCCT TTTGAACCACCCCCACCTCGCTCTCTCCCTCCACGCCGCTGCCATTCGGCTTGGTCTTGATTTTGACCTCTACACTGCCA ATGCTTTGATGAACATGTACTGTAAGGTTCAGAACTTGGGTGGGTTCGGGTCTGCTAACAAGGTGTTTGATGAAAATCCT CAGCGAGGGAAGGGCTGTAAGTGTGAGATAGATAGTGTTAGGAAGGTTTTTGATTTGATGCCCGCGAGGGATGTTGTTTC CTGGAACACTGTCATTGCTGGGAATGCTCAGAACGGGATGTTCCGGGAAGCGTTGGACATGGTTAGGGAGATGGGGGATG ATAAGTTGAAGCCTGACTCCTTCACTTTATCCAGCATCCTTCCCATTTTTGCAGAGCATGTTGATGTTGTGAAAGGAATG GAGATTCATGGGTATGCTATCAGGCATGGGTTTGATGGGGATGTTTTCATTGGAAGTAGCTTGATTGACATGTATGCAAA ATGTAATCGAGTGGAACATTCGCTTCGTGCATTTTACCTTTTGCCCTACCGAGATGCCATCTCTTGGAACTCTATCATTG CAGGTTGTGTGCAGAATGGCAAATTTGATCAAGGGATTGGTTTTTTTCGGCAGATGTTGAAGGCGAAAGTGAAACCTATG CAAGTCTCCTTCTCCAGTGTCATACCCGCTTGTGCTCACTTGACGGCTTTGAATTTGGGGAAGCAGCTTCATGGATGCAT AATTAGGCTTGGGTTTGATGATAACAAGTTTATAGCTAGCTCTCTGGTGGACATGTATGCCAAATGTGGGAACATTAAGA TGGCAAGGTATATTTTTGACAAGATAGAGACACGTGACATGGTGGCATGGACTGCCATCATTATGGGATGCGCCATGCAC GGGCATGCCCTTGATGCAGTTTCCTTGTTTGAGAAGATGTTAGAGGATGGAGTAAGGCCCTGCTATGTGGCATTTATGGC TGTTTTAACTGCATGTAGTCATGCTGGGTTGGTAGATGAAGGCTGGAAGTATTTTAACAGTATGGAAAAGGATTTCAGGA TTGCTCCTGGCCTGGAGCACTATGCTGCTGTTGCAGACCTGCTTGGCAGAGCTGGAAGATTGGAGGAAGCCTATGACTTT ATTTCTAACATGGGAATACAGCCAACAGGAAGTGTGTGGTCAACATTGTTGGCTGCTTGTAGGGCTCATAAGAGTGTAGA ATTAGCTGAAAAGGTTGTTGACAAGATACTTTTGGTTGACCCTGAAAACATGGGTGCATATGTTTTAATGTCAAACATCT ACTCAGCTGCCAAAAGATGGAAGGATGCTGCAAAATTGAGAATCCACATGAGGAGTAAGGGTTTGAAGAAGACTCCAGCG TGCAGCTGGATTGAGATTGGAAACAAAGTACATACTTTTCTGGCTGGAGATAAATCACATCCATATTATGACAAAATTAA TGAGGCGTTGAATATTTTATTGGAGCAGATGGAGAAAGAAGGTTATGTCCTTGACACGAGTGAGGTGCTCCATGATGTTG ATGATGAATATAAGCGTGACTTATTACGCACTCACAGCGAGAGACTTGCCATAGCATTTGGCATCATTAGCACTACTTCT GGTACAACCATCCGAGTAATAAAGAATATTCGGGTGTGTGTGGACTGCCATACTGCAATTAAATTTATTTCAAAGATTGT AGGCAGGGAAATTGTTGTACGGGATAATAGCCGGTTTCACCATTTCATGAATGGGTCATGTTCATGTGGAGATTATTGGT GAAATAACAATCATGATTGGAAATCCTGTGTTCATAGTCCTAGCCTCTGGTTGTCATGGCAACTAAGTATGTTAAGATTG TGGCTGCACAAGTAGGACTAAACTGAGGTGGATTCAAATGATACAGAACGAGTGTAGAAGCAGACAAACTGAAATCAGGG CCATAAATGGGTTTGGATATTGGCTGTTCTGCTCATGCAGTAGGAAAGCCAAGCAATCAAAAAAATTGTAAGGCGATAGA GCCTGTTTGCTCTCTGCTTGGTGAAGAGAACTTGGATCCTGATTCCACATTGTTGGATTTCATGTCAAACATTTGACTTG AGTTCTGATTCCTACCTTATTAACAACACTGTGAGTGTTCAATTACTTTTGCAACCTCCTGTTTAGTTCAGCACAATGTT TTGTTTTGTTGATGGTGCGTTTTAACTTTCATTACATAATTCAACAAAATTAATTTTAATTAACTGTTGTAAAAGATCCA TTTCAGTTCTGGTTGGTGAGCCTTGTTAATATCCAATGTCTTTTTCTCTGTTCTCATAGACTATACCATTATTGATTCCA GGGAACTAGAATTGTATAAGCATTGTGAACTTTTATTATTTTGAGATTAGGGCATTCCATAAATGGATTTTTGTTTGTAT ATATGACCCTGGATTTTCCTGTTTTTACATTTTCTTTTCCAGAGGCAGAAGGACATCAATATTTACTGCCAGAGATGCGA TAACATGCTTCAAATATCACTTTTACCTTAGTTAATTCACAAGTAAATTTTGTATGAATTATCTTTGTTTTCCCCTTTTT AGGTTGTTATATGTTAGTGTTCAGAAGTCCTTGGTTATAATGGGAAAACCTAAAGTAATATTGAGATCAATTGCCTGATA CTTTCTTCTTAATTAATTAGCAAATGAATTTCTCTTTAAAAACCTGCATGAGATAACAAGATTCTGCTGGAGGCAACTAG CTAGCTTATGGCATAACCTTGAGGATTAATGAAGCATCCTATTTTCAGATCTTGGTGGATGAGAAATCTGCATTTATCAT GGCTGGGGAACCAGGAGTATGTCAATGTTTGTTGAAGGTACAACTTGGAGGTTAGATTGCATGAATACCTGCTTCTAGTT CTTGGATCTATGATCTTACCTTAGAAATTTTCTAATCTTTTTTAGGACCTAGCAACTATATCCCAGTGAACAGAGAGGCT GTTTCTGCAAGGCCAAATTGTATGAAGGGGAGGGAATGTTTAGGGCATATGATCAGCTTGTCAGTGGACTCTCCAGAACT ACACATATTTTGATACCGGATGGTATCTCATTTGGAGATATATGAGTCTCTCTTAGTTATGGAAAAAATATTTCCTTTTA TTATTTAGAAAATGAGCACTGTAATGTCTAATTTTCAATGAAGATTTATTTACATTTCTATTTAGCTTTTTGATTTCTTT GGATCAGTTTGATTCAAATAACCTTAAAGTGAATTGTGAGTAAGAATCAACAACATGAAGAAGTAAGAAAGTCAAATAAG AAATACTACAAAACAAGCAAATTTCTGCCAACAACATGGACTAACACATTAATCTCAAAACATGAGAAGTGATTGCATAA CTAACTGTTATAAACGATACATTTCAGTTCTGATTGGTGAGCCTTGCTAATTCAACAAACCTTTCATTATTTTCAAAATA CTGAAGAACCTCACCCTGTTGAATGCTATTCTGTGTATAAAACAATGAAGTCGAGCCAAACCTAAAATCACACAGCTTTC TTGAAGTTCCGTCTACAGGATCATAGACCATGGCTCCATATTTACCTGCAATCAACACCAACAAGTGGTTTTTTGCTGTG CGAACAATGTATAAGCCTAACGGAAGCTGATACCGGAACCAAATTATGTCTACAACAATTTCGCTACGCAGGGAATTAAG ATCAAGATGATGCCTCCATGTCCATTCAGAGTAATCTTCCTTGAGCTCATAAATATCATAATTGAAGTTGAAGCCGAGCC TGGGACTTAGCATCATATGCAAACGACCCCCAGACTCTCCAAAATAATGGAGACGTCTATCATACCTTTTTGAATAAGCC GGAGGAATTGGAAGATTTTGTAGGCACTTAGTATCAAGATGAAAATATATAAAGAAGTAACCTCTGTTGCACCAATGAAT AGCACGGTTGCAGTAAACCCCATGACCAACATCATCAAGTTCTGATGAGGTAGAGCGTAAAATCTCAGACTGAGAGTGAA TCCAGGAACGAGATTTGAAGGAATATACATTAAAAACCCAGTCAAGCTTGGAAGCATTCACTGCAGCAACTGAAATGATT TGGAAGGGGTTAAAAGCAAGAAAAAGGGTTCTGTTGCGTGGGGGTTTGCTTTTGAACCAGGATGGCAAACTGAGAGAGGT GAATTCTCTGGTGATTGGGTTGCAGATGAAATAATTGAAGGGATCTAAGCCATGGCAGAGGATTATACCGTTGCAGGAAC GAACGACGTTGAGTTCATATTGGTGGAGAAAATTGAGATTGAAACGGGTTGGGGTTGGGGGTGGGGTTGGGGTTGTAGCG GTAAAGCAGAGGATGTGCGGTATCTCTATACGTCCACTAGCCTTGGGGTTGAAAATCAGGGAAGTGTTGTAGCGTTGGTG TTTGTCGCGGTGAGACTCACGAAATTGTTGGTCGGAAATAAGTGTCAGCCACTGCCTCGAGACGCACTTTGATCGTATCA GGGATTTCAATGGCAGTAGGATAAGGATCTCCCATAATAGATCTAGGGTTCCGCCCACCTCCTCAGCGGCGGCGGTTGAA CACTTTTTCCGCATTCTTTTTTCTCCAGATATCTTCTGTGTTAACCACAATTCAAATTCAAATAAAAACTAAAAACTAAA AGATATAGAGACCACTCTCAACGCATTAACTTACAAGCCAAAATAAAGCGGGTTTAACGGGCTATTGGGTTACATTCTTC AATCCAACTCGCCA
CDS sequence (LotjaGi4g1v0458200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACGAAAGCAATGAGTTCCATACAAGACGCGATCACACGCATTCTCAGAAACCCAAACACCGTCACTTCCACCCA CCACGCCAAGCAACTCCATGCTTACATTCTGAAGACGAGAGGAACACTTCACTCCGACAACTCCCTCGTACTCTCACTCT ACTCCAACCTCAACCTCCTCCACCACTCCCTCCTCCTCTTCCGCTCCCTCCCCTCTCCTCCGCCACCTCTAGCATGGTCC TCCCTCATCAAATGCTACACCTCTCACTCCCTCTATCACCTCTCCTTCTCTTCCTTCAATGCCATGCGCGCTCTGGGAAT CTCCCCGACCCGCCACTTCTTCCCTTCCCTCCTCAAAGCTTCCACCCTTTTGAACCACCCCCACCTCGCTCTCTCCCTCC ACGCCGCTGCCATTCGGCTTGGTCTTGATTTTGACCTCTACACTGCCAATGCTTTGATGAACATGTACTGTAAGGTTCAG AACTTGGGTGGGTTCGGGTCTGCTAACAAGGTGTTTGATGAAAATCCTCAGCGAGGGAAGGGCTGTAAGTGTGAGATAGA TAGTGTTAGGAAGGTTTTTGATTTGATGCCCGCGAGGGATGTTGTTTCCTGGAACACTGTCATTGCTGGGAATGCTCAGA ACGGGATGTTCCGGGAAGCGTTGGACATGGTTAGGGAGATGGGGGATGATAAGTTGAAGCCTGACTCCTTCACTTTATCC AGCATCCTTCCCATTTTTGCAGAGCATGTTGATGTTGTGAAAGGAATGGAGATTCATGGGTATGCTATCAGGCATGGGTT TGATGGGGATGTTTTCATTGGAAGTAGCTTGATTGACATGTATGCAAAATGTAATCGAGTGGAACATTCGCTTCGTGCAT TTTACCTTTTGCCCTACCGAGATGCCATCTCTTGGAACTCTATCATTGCAGGTTGTGTGCAGAATGGCAAATTTGATCAA GGGATTGGTTTTTTTCGGCAGATGTTGAAGGCGAAAGTGAAACCTATGCAAGTCTCCTTCTCCAGTGTCATACCCGCTTG TGCTCACTTGACGGCTTTGAATTTGGGGAAGCAGCTTCATGGATGCATAATTAGGCTTGGGTTTGATGATAACAAGTTTA TAGCTAGCTCTCTGGTGGACATGTATGCCAAATGTGGGAACATTAAGATGGCAAGGTATATTTTTGACAAGATAGAGACA CGTGACATGGTGGCATGGACTGCCATCATTATGGGATGCGCCATGCACGGGCATGCCCTTGATGCAGTTTCCTTGTTTGA GAAGATGTTAGAGGATGGAGTAAGGCCCTGCTATGTGGCATTTATGGCTGTTTTAACTGCATGTAGTCATGCTGGGTTGG TAGATGAAGGCTGGAAGTATTTTAACAGTATGGAAAAGGATTTCAGGATTGCTCCTGGCCTGGAGCACTATGCTGCTGTT GCAGACCTGCTTGGCAGAGCTGGAAGATTGGAGGAAGCCTATGACTTTATTTCTAACATGGGAATACAGCCAACAGGAAG TGTGTGGTCAACATTGTTGGCTGCTTGTAGGGCTCATAAGAGTGTAGAATTAGCTGAAAAGGTTGTTGACAAGATACTTT TGGTTGACCCTGAAAACATGGGTGCATATGTTTTAATGTCAAACATCTACTCAGCTGCCAAAAGATGGAAGGATGCTGCA AAATTGAGAATCCACATGAGGAGTAAGGGTTTGAAGAAGACTCCAGCGTGCAGCTGGATTGAGATTGGAAACAAAGTACA TACTTTTCTGGCTGGAGATAAATCACATCCATATTATGACAAAATTAATGAGGCGTTGAATATTTTATTGGAGCAGATGG AGAAAGAAGGTTATGTCCTTGACACGAGTGAGGTGCTCCATGATGTTGATGATGAATATAAGCGTGACTTATTACGCACT CACAGCGAGAGACTTGCCATAGCATTTGGCATCATTAGCACTACTTCTGGTACAACCATCCGAGTAATAAAGAATATTCG GGTGTGTGTGGACTGCCATACTGCAATTAAATTTATTTCAAAGATTGTAGGCAGGGAAATTGTTGTACGGGATAATAGCC GGTTTCACCATTTCATGAATGGGTCATGTTCATGTGGAGATTATTGGTGA
Protein sequence (LotjaGi4g1v0458200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTKAMSSIQDAITRILRNPNTVTSTHHAKQLHAYILKTRGTLHSDNSLVLSLYSNLNLLHHSLLLFRSLPSPPPPLAWS SLIKCYTSHSLYHLSFSSFNAMRALGISPTRHFFPSLLKASTLLNHPHLALSLHAAAIRLGLDFDLYTANALMNMYCKVQ NLGGFGSANKVFDENPQRGKGCKCEIDSVRKVFDLMPARDVVSWNTVIAGNAQNGMFREALDMVREMGDDKLKPDSFTLS SILPIFAEHVDVVKGMEIHGYAIRHGFDGDVFIGSSLIDMYAKCNRVEHSLRAFYLLPYRDAISWNSIIAGCVQNGKFDQ GIGFFRQMLKAKVKPMQVSFSSVIPACAHLTALNLGKQLHGCIIRLGFDDNKFIASSLVDMYAKCGNIKMARYIFDKIET RDMVAWTAIIMGCAMHGHALDAVSLFEKMLEDGVRPCYVAFMAVLTACSHAGLVDEGWKYFNSMEKDFRIAPGLEHYAAV ADLLGRAGRLEEAYDFISNMGIQPTGSVWSTLLAACRAHKSVELAEKVVDKILLVDPENMGAYVLMSNIYSAAKRWKDAA KLRIHMRSKGLKKTPACSWIEIGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTSEVLHDVDDEYKRDLLRT HSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFISKIVGREIVVRDNSRFHHFMNGSCSCGDYW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 28 | 182 | 155 | 2.7E-12 | ||
| ProSiteProfiles | 75 | 109 | 35 | 8.188 | ||
| Pfam | 78 | 107 | 30 | 0.5 | ||
| PANTHER | 134 | 257 | 124 | 6.2E-110 | – | |
| ProSiteProfiles | 145 | 182 | 38 | 6.785 | ||
| Gene3D | 183 | 273 | 91 | 4.9E-14 | ||
| ProSiteProfiles | 200 | 234 | 35 | 11.466 | ||
| Pfam | 200 | 243 | 44 | 6.2E-10 | ||
| TIGRFAM | 202 | 236 | 35 | 3.5E-6 | ||
| ProSiteProfiles | 235 | 269 | 35 | 5.689 | ||
| PANTHER | 255 | 359 | 105 | 6.2E-110 | – | |
| ProSiteProfiles | 270 | 300 | 31 | 5.842 | ||
| Gene3D | 296 | 402 | 107 | 5.5E-19 | ||
| Pfam | 301 | 348 | 48 | 3.1E-8 | ||
| ProSiteProfiles | 301 | 335 | 35 | 12.211 | ||
| TIGRFAM | 303 | 335 | 33 | 4.2E-7 | ||
| SUPERFAMILY | 314 | 561 | 248 | 5.81E-7 | ||
| PANTHER | 353 | 567 | 215 | 6.2E-110 | – | |
| ProSiteProfiles | 371 | 401 | 31 | 7.267 | ||
| Pfam | 376 | 401 | 26 | 0.073 | ||
| ProSiteProfiles | 402 | 436 | 35 | 11.466 | ||
| Gene3D | 403 | 594 | 192 | 2.7E-32 | ||
| Pfam | 404 | 434 | 31 | 3.1E-6 | ||
| TIGRFAM | 404 | 436 | 33 | 5.0E-5 | ||
| ProSiteProfiles | 437 | 467 | 31 | 7.07 | ||
| Pfam | 439 | 466 | 28 | 0.019 | ||
| TIGRFAM | 440 | 467 | 28 | 0.0027 | ||
| ProSiteProfiles | 473 | 503 | 31 | 6.16 | ||
| ProSiteProfiles | 505 | 535 | 31 | 5.218 | ||
| ProSiteProfiles | 539 | 573 | 35 | 7.892 | ||
| Pfam | 576 | 698 | 123 | 4.6E-42 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0458200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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