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LotjaGi4g1v0461400.1

Overview

Field Value
Gene ID LotjaGi4g1v0461400
Transcript ID LotjaGi4g1v0461400.1
Lotus japonicus genome version Gifu v1.2
Description Pentatricopeptide repeat-containing protein; TAIR: AT5G18475.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q3E9F0|PP392_ARATH Pentatricopeptide repeat-containing protein At5g18475; TrEMBL-Plants: tr|G7J565|G7J565_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0461400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:83185126..83192965) extracted from Lotus japonicus Gifu genome v1.2.

ATTTTAATAGGACGAATACCAAATATGTTTTCATACACAAGAATGAAGAATGAGATCCAACTTAAAATACCAAATAAATT TTTATTCCGTATTTTCAAACGGTGAATGCACGAGCCCCCCTCCACCTGAGCTTCTTCACAGCGGCGTCTTCCTCCACCGC TCACCGTCACTTCGGCCCTGCTCAGCCGGTAAGTCTTGCTCTTATCTTCTTCATCTTTACTCTGTTCCTTTCTCGAATAG ATAACATTCAATCAAATTGGAACTTGAAGTTCTTATAAATTGGATGTTCATGTAGATCTGTAGATGTTTAATTCACTGTG TTTGTTCCAATAAATGAGTTTTGTTACTTCGCAATGACAGGGATCTATCTGTATTCTGTATTCAACATTGAATTGAATTG AATTGAATTGAATTCCATGAAAGTTTCAGCAATTCATTGTGCCAGGCACAAGCCCCATAACTGTGTCACCTCATTTCAAT TTTCCTCCTCCTCATCTTCGTTGCCATGGATATCTCCCCTTAACTTTACAAAACCTGCAAAACCTAAACCAGACCCTCCT CCTGAATTCACTGTCACTCCCGCTGAGCCTCGGAAGAAGCACAAATATATCACTCATGACTCTGCAATCAATTTGATCAA GCGAGAGAAAGATCCGCAACATGCCTTGAAAATATTCAACATGGTATCAGAACAAAAGGGTTTTAATCACAACAACGCAA CATATGCCACGATTCTCCAAAAGCTCGCTGAGTCTAAGAAGTTTCAAGCCGTGGATCGAGTTCTGCATCAGATGACATAT GAAACTTGCAAATTTCATGAGGGTATATTTATACACCTCATGAAGCATTTCTCAAAGTCCTCTCTTCATGAGAAAGTGCT TCAGTTATTTTTATCCATTCAGCCGATAGTTCGTGAAAAGCCCTCTCCTGAAGCGGTCAGCACTTGTCTCAATCTCCTGG TTGATTCTAACCAGGTTGATTTGGCACGAAAGTTGCTCTTGCATGCCAAGAGAAGTCTAACACAAAAGCCAAACGTCTGC ATACTTAATATCTTGGTGAAATACCACTGCAAAAATGGGGATCTTGACTCTGCATTTGAAGTTGTAAAAGAAATGAGGAA CAACAAGTCATCCTACCCGAATATAATTACATACTCAACCCTGATGGATGGCCTCTGTCAAAATGGAAGACTCAAAGAAG CTTTTGAACTTTTTGAGGAAATGGTGTCAAGGGAAGGGATCATGCCTGATCCCCTCACTTACAATGTTTTGATCAATGGA TTTTGCCGGGAAGGTAAACCCGGTCGTGCTAGAAATGTAATTGAGTTTATGAAAAGTAATGGATGCCGACCAAATGTAAT TAATTACTCAGCGCTGGTGAATGGCTTATGTAAAGTGGGGAAAATTCAAGATGCAAAAGAGGTTTTTGCGGAGATGAAGA GCTCTGGTTTGAAACCTGATACATTTAGCTACACTACTTTGATTGATTTTTTCAGTAGGAATGGGCAAATTGATGAAGCT ATTAGGTTGCTTAAAGAAATGAAGGAAAATGAATGCCGGGCTGATACTGTTACATTCAATGTTATTCTTGGAGGCCTGTG CAGAGAAGGCAGAGTTGAGGAGGCTCTGGGTATGCTTGAGACACTTCCGCACCAGGGTTTCTATTTGAACAAAGCTAGCT ACAGGATTGTCCTCAATTCCTTGACTAAAAAATGTGAATTGAAAAAGGCAAAGAGCTTATTGGAGCTAATGCTAGGTAGG GGTTTTTTACCCCATTATGCTACCTCAAATGAATTATTAGTTAATCTTTGTAAGGCAGGAATGGTTGATGCTGCTGCTGC GGCACTGTTTGACTTGGTGGAGATGGGGTTCAAGCCAGGACTTGATTCTTGGGAAATTTTAATTCAATTAATCTGCAGAG ACAGAAAGTTATTGCATGTTTTTGAGTTGCTTGATGAATTAGTGATCACAAATTCTTGATATTTTCATTATGAGCAGAAA TAATGGGTTTCACAAGCATTTGCTGCTTAAAATTCTTCACTTGATGCAAATGATGATACAAGTTATTCAGATAAAACTGG TATGCGGTTGTTGAAACTTCATGTACCAGCTTCAACAGGCATTCTTTTCATCAATAAGTCCAACAGGAAATTTCATGTAT CTGCTTCATGTCTGGTCGTCATTCTTTTCAACAATGAACATAGTAGCTTTCATTCATTGTTTGCTATTACAAGATGTCCC AAAAGTTGTGCCTAAAAGAAAGACTCAGGCCCACTGAACGAGGTTTTCCTTTCCCTGCAAATATTTTGTTGCAGATGATG ACTTCATTGTACTTTATTCTGTAATCTACTCGATGACAAACAATGAATAAAAATGAATGAAACAACACTACGAAGTGTGT GAATTGATACCTTTGTTTTTCTTTTTGGGTTGAAGAGTATGATATGATACTAAACATGAAAATTTTACTACACTCAAAGC ATCCAGCTTACTGGATCAAAAACCATACCTATTGATGCAACAGCTCAAGGGATTTCTGCAATGTTGGCCTAAACCTATTA ACATCAAGCCTTACATTTTGTTTATCCAAATACACAGACCTAAATGCTTCCCATCCTAGTTTCCCAATTGATGACGGATC CTTTATGACCATATGATCTCGGGGGTATTGTTGAATAAGAGTGCTTTCTTCCAACTGTATTTTGTATTCCAAGTATTTGA TGTTCATATCCTCTGAGGGCTCTCCAAAGTCATTGGTGGCAAGCCATTCCACTCCACCATAAGGCACAACTTGGATGAAA ATTGCATTTTCTGGAAGGAAAAGTATGTTAGTGAGACCAGCACCATGAACTCCCAGTAGGACATCACAAGAATTCACAAC TTGTGCAAAGCTTTTCATGCTCCCCCCTGCCTCCATAACAATGACACTGAAACCCATGCCTTTAGCCAATCTCGCTATTT GAGCTGCATTGGTGAAGGATCTTGATCTTTTTCTTGAAAGAATCAGGAGCCTGGGCTTCTTACGTTGACTACCTCTGATT CTGGTTGCTTTAACTCTCTTCAATGAATAGGAACTTCTCAAAAAATCCCTGAAGTCTTTCATTGAATAGGAATACTTTTG AGGGTCAATGCTTAGCTCTTTATGATACCTTTTGAGACCCACATTCACCCTTGGGAAGCAATGTACTTCCTCGTCACTGT CAATGTCCATAATCTCATAGTTGGACAGCTTTTTAAGAAATGCTTGGTGCTTTAAAATCCACCAATGCCTCTTATCAGTT ATGATAAATTGTACTTCTCCTTTGAATTGTCTAGAAGTCAAAAACAATGGAATAACAACGTCAGTGAATTCATGGAAGTT GTTGCCAGTATACCCTGCTGTGGAAAATATTACTGCTGGAATACTGTGATTTTGGGTGCACTGGGGGATTCCCTGGCTTA CTTCTATTGGTTTCACTGACCATTTTCTTACACTACTCATTGCAGCTGCATCACTCGTCCGAGCATAAGGCCTTATACTC CATGAGATGTTTTCTGCCAAAATGGTTGTTTTAGGTGACACGACGTAGACAGAGGAGGATTTTCCATGCACTCGGACATC TCCCTGGGTTTGGCAATATTCTGTTCTTTCTTCTGTAATGCACATTTGCTCCACTCTCTTTGTTTCTTTATCTTCAACTG CAAAATAAAGAATGGTGTTGAATATCTGTTTAGATTTAGTTTACTATTAGTATTATCTCATTGAGATATAGTTTAGATTT GTTTCTCTATTTTAGATTAGTATCTATTTAAATAGAGATAATATCTATTTAAATAGAGATAATATCTATTTAAATAGAGA TAGGTTTAGATAGATTTAGTTTCTTTTTATCTCTTTGTTAGTCTATATATATTGTAGTTTTCAGTCAAGTATTAATCAAT GAAATACACAATAATTATTTTATCAAATTCAAGTTGGTATCAGAGCGAGTTTCGATCCTACCGCTGTGAGGGGGCTCCTC CCCCGTGAGCCCCCTCATGGTGACCTTCCAAATCTCTTTGGATTATTTTCACTCGTCCTGTGCTTCCGCGCTTGTTCGTT CTAGCCTTTTCTTACGGCCTCGTTTCTTTCTGATTATGGTCCCCTTTGTCTTGGAACCCTATTGACCCTTGTTTCTTAAT ACTTAAAACAACCGCGCCTTCTTCTTCGGCGCGTGAAGGTAACGCACAAACCTGAACTCGACGCGACGACCACATACATG TTCGTCCGTTGTAGTATAGTTGGTCAGGATATTTGGCTCTCCCTCCTGGTTCTGTTCCAGATGTTGTTTTCTCCAGATTT TCCTTCCTTTAATGCAGTTGCGTGATTGGAAGAAATTGTGGGAATTGATTCAACAATTGTTTACTCAAGAATTCTTGATT GGAATGACATAATAATTCTTCACTGCCAGCGAGAGTATTGGTTACATGAAGTGGAAATATGGAATGCCAATGCGTTGGGA TGGTGATATTGGAAGTTTCTGATGATGCCAGAATGAAGCAGTACCATGTGGCTCTTTGGTCCAATCCAGTTCTCAATTAG TGTGTTGGGTTGTTCTAGTTTCTTGTTTTTGGTTTCTTGGTTTTGGTTGGCACAGTGTGGTTTTGGAGTTGGAAAAGATT TTTGCTCTCTATTAAAGTGGAGAATTGGTTTTGCATTGTGTGGTTTGTTGGTGTATAAATTTTGGACTATTTTTGGGAAT ATCTCTCTCCGGCAGCAGCTGCTTCTCAAGTTAATTATATTTGTTAAAAGCTATGCATATGACATATATGCGCTAGCTTG AGGGGAAGATCTGAATATTGTTAAATCTTAATTATATTTGTTACAAGCTATGCATATGACATATATGCTATAGTTTGAAG GGAAGTGTTGGATATTGCTAAATATCCTAATAGAGACCACAGTCAACCACCGCCGACAATCGTTATCCTTGTTGCTGGTT TGGTGGAGGGTGTATTCAAGAAGTGTTTGGTTGGATCTAATTGTATTGCGCTGCATTGTTCTCGCTGGTCCTATTTGTGT TTCGGCCAGGTTTGGTTTTTAAGGTCCTCTATTTGACGTGTGTTGTGGCGCCACCGTTAATGGTCGTCTGGTCTTCCTCT TCCAGTTTGGTTTGTGGGTCTGCTGTGTTTTCTCATCTGCGATGTTTCTTGCTGTTTGAGTTCTTAGTTTGCGTCTCATG GTTCGTGATGCTCTTATTATATTGATCTTGGCTGACTTTATGCAATTTGGTTTTGTTTGGTTTTGAAGGTGAAAGTTCGT TTGTTTTGTCTCGATTGTTTGGTTTTCTGGTTTTAGGGCTTCAGCTGCAAGTTGCGCTGGCCCACTCTCTAGTTGAGAGT TATTGGTTTTGGTTTTAGGGCTCTAGCTGCGAGTTGCGCTGGCTCGCTCTCTAATGTTTGAGAGTTGTCTGTGTCAAAGT TGACACCATTGTTTGTTTTAGAAGCCATCAATCGATCGACCTCAAGTATGTTTTATTTCTGTGTGGTTGTTGTTGGTGAG TTGTTGCTTCAGCCTTGTTTTGTTTTCGGGCGTATTGTTGCTGGTTTTTCGCCCTTGTTTGCTGACTCAGCTACCCTACG ACACTCCAGAAGAATTGGTTTTTGTCTTGCATCAATTTCAGCCAGATCAAGTATGAGAAGTTGTCTTTTGCCTGCCCATG GATTTAGCAGAAGTTCGAAAGATTATTCAATTTGAAGTATGAGAAGTTGGCTTTTATCGCCATGGATTTACTAGAAGTTT GAAAGGTTATTCAATTCAGAAATTCGCCAAGACTGTCATTATTAAGGGATATCTATTAAGATAATTTTTTTCTTGGGTTC GATTTGTTACAAGCTTAAAGCTAAGTAAGCTTTAGCTTGAGGGGGAGTGTTGAATATCTGTTTAGATTTAGTTTACTATT AGTATTATCTCATTGAGATATAGTTTAGATTTGTTTCTCTATTTTAGATTAGTATCTATTTAAATACAGATAATATCTAT TTAAATAGAGATAGGTTTAGATAGATTTAGTTTCTTTTTATCTCTTTGTTAGTCTATATATATTGTAGTTTTCAGTCAAG TATTAATCAATGAAATACACAATAATTATTTTATCAAATTCAAGTGGTCACATCTAAGGGTCTAGTCTAAAAATTTCCAA CATATGGAGCTGATTTGACTTTTGAGCAAGCTTTTTAAGTTTCAACCATACTGAACTGAAATGAGTAAATCCTACCTTCA GCTTTTGGTGGAGAGCCACTAGTGTCATTGATGAGGATCTTGGTTACATTATCTTCAACTGCAAAATGAAGGAATTTTTG TCATAATCATTAGCAAGAATCTTTGGGGGATAAGCCACAATTAGAGCTAACTCAAACTAGCTCTTATTTGTTACAAAGTT GTAATTACCTTTAACTATTTGTGGAGAGCTTCTGGTGTCATTGGCAAGAATCTTTGGCTCAATGCTTTCAGCTAGCAAAT GAAAGATATTGAGAGTTAAAGGTCTACCTCAAATCCTTTTAACCTTATTGGGATTTGGCAAATCTTACCTTCTGCTTTTG GTGGAGAGCTGCTAGTGTCATTGATGCCAATCTTTGTTACATTATCTTCAACTGAAAAATGAAAAAGGTTTTGTCAAAAT CATTAGCATCCAGATGACCTGAATTAGCTCTCACTGTTTTGAACTTGTCATTACCTTTAACTATTTGAGGAGAGCTTCTG GTGTCATTGACAGCAATAATAGGAGGATTCTTTGGTAAAACGCTTTCAGCTGACAAATGAAAGATATTCAACGGGTTAAC GGTCTAGCTCAAATCTTTTTACTGTTATTGAGGTTTTGCTCATCTTACCTTCATCAATATGTGGAAAGCTGCTAGTGTCT TCAACAAGGATTTTGGCTACAATGTGTTCCACTGCAGACCAAAGAATCATCACATAAACACTGGTTATCAGAATCATTTG CCTCAACAGGCAGTGATATCAGCAACATCTACTTCTGTTAGTTAACCTTGTTAAGATTCTGAATGTTTTACCTTTGGCTA TATGTTGAGAGCTTCTGGTGTCATTAACCATCCGCAATTTGGTGTCAGCGCCGATGGAGAGCTTCAGGTTCACTATGAAG AAACAAAGGGAGTTAAAAATACACTCAATGGCTACCACAACCATCTTACAGTAGCAAATGATTGGATATATATACTTGCC AAAGCAGTGTATATAGAAAACACCATGCATGCTTGTATTTAGTCTTGGATTATGGACATAGGTGTTAATGCAAGTAGGTA GAGAGCAAAAAGTTGCACTCACAATCATGTATAGGGCCCAAGTAAGGTTTAAACACAGTGCAAAGACTCAAAACCATCAG CAAGAAACCCACAAATGCTCCATATCCTAATCTTTTCTGCTCATAATGACTAAAGCTTCTGGCAAATATTGTATTGTAAG TCATTCTTTTTGTCTCCCAAGAACCAACCTCTATCAGAATTACAATGCCATCTAACAAATGAAAGCCATTTTGACACAAA AGCTGATTAGTTGATGACCTTAAAAATCTTTGTACCCCTCCTTTAATGGTTGAGAGCAAAGATTTTGAGACACTTCTATA AGACAAATGGAGGAAGGTTGAGGTGCATTTTTTCTATTGAAAATTGCTCCCCACGTAGTTGTTAGCTCTTGAATAAGCAG GATTCTCCAAAACAAAAAATTTATTATAGGGAATGAAAAGGACTTTGTAGTTGACTGTTAAGAGACATGGAAACCTTTTC AATGATTGAAATTTGGTCAGGTAATATCTTTTCAATATATGAAGCGTGAACTACCAGCTGTGGAACCCAGCTTTGAAAAG 

CDS sequence (LotjaGi4g1v0461400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAAGTTTCAGCAATTCATTGTGCCAGGCACAAGCCCCATAACTGTGTCACCTCATTTCAATTTTCCTCCTCCTCATC TTCGTTGCCATGGATATCTCCCCTTAACTTTACAAAACCTGCAAAACCTAAACCAGACCCTCCTCCTGAATTCACTGTCA CTCCCGCTGAGCCTCGGAAGAAGCACAAATATATCACTCATGACTCTGCAATCAATTTGATCAAGCGAGAGAAAGATCCG CAACATGCCTTGAAAATATTCAACATGGTATCAGAACAAAAGGGTTTTAATCACAACAACGCAACATATGCCACGATTCT CCAAAAGCTCGCTGAGTCTAAGAAGTTTCAAGCCGTGGATCGAGTTCTGCATCAGATGACATATGAAACTTGCAAATTTC ATGAGGGTATATTTATACACCTCATGAAGCATTTCTCAAAGTCCTCTCTTCATGAGAAAGTGCTTCAGTTATTTTTATCC ATTCAGCCGATAGTTCGTGAAAAGCCCTCTCCTGAAGCGGTCAGCACTTGTCTCAATCTCCTGGTTGATTCTAACCAGGT TGATTTGGCACGAAAGTTGCTCTTGCATGCCAAGAGAAGTCTAACACAAAAGCCAAACGTCTGCATACTTAATATCTTGG TGAAATACCACTGCAAAAATGGGGATCTTGACTCTGCATTTGAAGTTGTAAAAGAAATGAGGAACAACAAGTCATCCTAC CCGAATATAATTACATACTCAACCCTGATGGATGGCCTCTGTCAAAATGGAAGACTCAAAGAAGCTTTTGAACTTTTTGA GGAAATGGTGTCAAGGGAAGGGATCATGCCTGATCCCCTCACTTACAATGTTTTGATCAATGGATTTTGCCGGGAAGGTA AACCCGGTCGTGCTAGAAATGTAATTGAGTTTATGAAAAGTAATGGATGCCGACCAAATGTAATTAATTACTCAGCGCTG GTGAATGGCTTATGTAAAGTGGGGAAAATTCAAGATGCAAAAGAGGTTTTTGCGGAGATGAAGAGCTCTGGTTTGAAACC TGATACATTTAGCTACACTACTTTGATTGATTTTTTCAGTAGGAATGGGCAAATTGATGAAGCTATTAGGTTGCTTAAAG AAATGAAGGAAAATGAATGCCGGGCTGATACTGTTACATTCAATGTTATTCTTGGAGGCCTGTGCAGAGAAGGCAGAGTT GAGGAGGCTCTGGGTATGCTTGAGACACTTCCGCACCAGGGTTTCTATTTGAACAAAGCTAGCTACAGGATTGTCCTCAA TTCCTTGACTAAAAAATGTGAATTGAAAAAGGCAAAGAGCTTATTGGAGCTAATGCTAGGTAGGGGTTTTTTACCCCATT ATGCTACCTCAAATGAATTATTAGTTAATCTTTGTAAGGCAGGAATGGTTGATGCTGCTGCTGCGGCACTGTTTGACTTG GTGGAGATGGGGTTCAAGCCAGGACTTGATTCTTGGGAAATTTTAATTCAATTAATCTGCAGAGACAGAAAGTTATTGCA TGTTTTTGAGTTGCTTGATGAATTAGTGATCACAAATTCTTGA 

Protein sequence (LotjaGi4g1v0461400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKVSAIHCARHKPHNCVTSFQFSSSSSSLPWISPLNFTKPAKPKPDPPPEFTVTPAEPRKKHKYITHDSAINLIKREKDP QHALKIFNMVSEQKGFNHNNATYATILQKLAESKKFQAVDRVLHQMTYETCKFHEGIFIHLMKHFSKSSLHEKVLQLFLS IQPIVREKPSPEAVSTCLNLLVDSNQVDLARKLLLHAKRSLTQKPNVCILNILVKYHCKNGDLDSAFEVVKEMRNNKSSY PNIITYSTLMDGLCQNGRLKEAFELFEEMVSREGIMPDPLTYNVLINGFCREGKPGRARNVIEFMKSNGCRPNVINYSAL VNGLCKVGKIQDAKEVFAEMKSSGLKPDTFSYTTLIDFFSRNGQIDEAIRLLKEMKENECRADTVTFNVILGGLCREGRV EEALGMLETLPHQGFYLNKASYRIVLNSLTKKCELKKAKSLLELMLGRGFLPHYATSNELLVNLCKAGMVDAAAAALFDL VEMGFKPGLDSWEILIQLICRDRKLLHVFELLDELVITNS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 38 59 22 -
MobiDBLite 40 54 15 -
PANTHER 46 409 364 1.6E-117
Gene3D 56 164 109 1.7E-11
ProSiteProfiles 99 133 35 7.224
Gene3D 165 291 127 2.9E-32
Pfam 204 234 31 3.1E-9
ProSiteProfiles 206 240 35 9.186
TIGRFAM 210 242 33 3.5E-6
Pfam 241 291 51 4.4E-20
ProSiteProfiles 242 277 36 12.814
TIGRFAM 244 278 35 7.6E-11
ProSiteProfiles 278 312 35 13.603
TIGRFAM 281 314 34 2.7E-9
Gene3D 292 398 107 2.4E-37
Pfam 308 341 34 5.4E-11
ProSiteProfiles 313 347 35 13.548
TIGRFAM 317 349 33 7.6E-10
PANTHER 320 514 195 1.6E-117
Pfam 347 396 50 9.2E-16
ProSiteProfiles 348 382 35 12.452
TIGRFAM 350 383 34 3.5E-9
ProSiteProfiles 383 417 35 11.235
TIGRFAM 385 418 34 4.5E-6
Gene3D 399 514 116 1.4E-16
ProSiteProfiles 418 452 35 9.449
TIGRFAM 421 452 32 1.0E-4
Pfam 421 450 30 0.041
ProSiteProfiles 453 487 35 8.089
ProSiteProfiles 488 520 33 5.952

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).

Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0461400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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