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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0464500 |
| Transcript ID | LotjaGi4g1v0464500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT1G73590.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1; TrEMBL-Plants: tr|I3T0I6|I3T0I6_LOTJA Auxin efflux carrier component; Found in the gene: LotjaGi4g1v0464500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:83453800..83457148) extracted from Lotus japonicus Gifu genome v1.2.
TAGGTCATGTACAGTTCATCAAAAATAAAAAAACAGAAATGTGACAGAATTCCATTTTTGCAAACATTCAATATCTCCCT AAAATCAGATGTCTATCTATGAGCAAAGGAGCAAGACGCATATGCTCCTCTCCAAATCAAGTACATTAGGCCAAAATGCT TTTTATATGCCTTTTAGGCTTTTGTGGCAGACTGAAGTGTCATTGCCATACAAGGTAGAGCATCAAACCCTAACTTCATG AGCCTATTCCTCTCTTCTCCTATCCAAATCCAAAACAAAAAGGTAAAAGCAAAGTTCAATTTAATTTTTTAAGAAAAAGA AAACCCCCCTCTCTGTTTTGTGCAAGTGCAAGCTTAGTGGCAGGTCTCAAAGCTCAAAAATATTTGCTGCATTCTGCAAT ATCACACACCAACCCACTATCCTCAAAAACCAAAACCCATGCTCTTTTCTTCATCATCACCCCCACCACTTCTGTTTCTT TATTCTTATTCTTCAACTCTGTTTCTCTACCGAAGTGAAGAAGATGATCACGTTAACAGATTTCTATCATGTGATGACTG CAATGGTTCCGCTTTATGTGGCTATGATATTGGCCTACGGCTCAGTGAAATGGTGGAAGATCTTCTCCCCTGACCAATGC TCTGGCATCAACCGCTTTGTTGCTCTTTTCGCGGTTCCTCTACTTTCTTTCCATTTCATCGCCTCCAACAATCCTTACCA GATGAACTTCCGCTTCATAGCTGCTGACACCCTTCAAAAAATCATCATGCTCGTCGTTCTCGCCATTTGGGCTAACGTCA GCAGAAGGGGGTGTTTGGATTGGACGATAACCCTGTTCTCCATTTCCACCCTGCCAAACACGTTGGTGATGGGTATCCCG TTGCTCAAAGGGATGTATGGCGAGTTCTCAGGGAGTTTGATGGTTCAAATTGTTGTCCTCCAGTGCATTATCTGGTACAC CTTGATGCTGTTCTTGTTCGAGTACAGAGCAGCAAGAATGCTGATCTCTGAGCAGTTTCCAGACACAGCTGGCACCATTG TCTCCATTCATGTGGATTCTGATGTGATGTCTTTGGATGGAAGACAACCCTTGGAAACTGAAGCTGAGATTAAACAAGAT GGGAAGCTTCATGTGACTGTGAGAAAGTCCAATGCTTCAAGATCAGATATCTTCTCAAGAAGGTCTCAGTCTCAGTCTCA GTCTCAGGGTGTTTCCTCCACAACTCCTCGCCCTTCAAATCTCACCAATGCTGAGATATACTCTCTACAATCCTCAAGGA ACCCAACTCCAAGAGGCTCAAACTTCAACCACACAGATTTCTACTCCTCTGATGTTCATGGGTTGTCAGCAACATCAAGA GGACCAACACCAAGGCAATCTAACTATGATGCTATTTCTGGTGGAACAGGAAACTACCCTGCACCCAACCCTGGGATGTT CTCGCCCAAAAATGTTGCTGCCAGTGCTAATGCAAAGAGGACTAATGGTCAAGTTCAAGCACAGCAGAAAGCAGAGGATG GGAATAAGGACCTTCAGATGTTTGTTTGGAGTACAAGTGCTTCCCCTGTTTCAGACGTGTTTGGTGGCCATGAATATGGA CTTCATGATCACAAAGAAGTGAAATTGAATGTTTCTCCTGGAAAAGGTTGCCTTTTATTCAAGTAAATCTCATCTTTTTG TTGTATTTTGTTTTGCTTGTTCATTATGGGGTTGATTTGATTGGTTCTTTACTTCATCAGTGGAGGGTCTATCTCAAGAG GAGTACCAGGTAGAGAAGGATGATTTCAGGTTTGGAAACAGAGAAACGAAAGTTGCAAAAGCTATGCCTCCAACGAGTGT GATGACAAGGCTGATATTGATCATGGTGTGGAGAAAACTTATCAGGAACCCCAACACCTACTCCAGCCTAATCGGTCTAA CTTGGTCACTCATTTCATTCAGGTACCTTTTTTCTCAGACAAAAACCTCTGCATCTTTGTTGCATATAATTTCATTCTTG TTTGGTTGGGTGCAGGTGGAATGTTGAAATGCCTGCCATCATTGCAAAGTCTATTTCCATATTGTCAGATGCAGGGCTCG GCATGGCCATGTTTAGTCTTGGTCAGTATACTATATGTCTATATGGACACTCCTTGTTATCACTTTAATTATTAAAAAAG TAGAATAGAAATTAACTTGTTCTGACCTTGAAAAAGAAAAGGAGGGAACAGAAAATCTTTGTGATTCCATGTTAGCTTTG ATTATTATTAAATGAAAATGCTTTGTTTTGTTTGATAAAGAAAGCAAGCAAGCAGGCAAGTGTGTTTGCGAAAAAGCAAA GTATGGCAACAGTATAATATAATATGTTGGTTCCTTTATTTATGAATCTTTATTGTGACTTTTATATTTTGCCTAAGCTT GTGGTGTGTGTGAGTGTGAATGATGGTGATGGACATGCTTTAATTTGTTTGTTTCCTTCTGATGGTGGATCGTTTTGATT TGAATGAGTGAGTGACTGCAGGGTTGTTCATGGCTTTGCAACCAAAGATGATAGCATGTGGAAATTCCATAGCAGCTTTT TCAATGGCTGTGAGATTCCTTACAGGTCCGGCTGTCATGGCAGCTGCTTCCATTGCTGTTGGACTCAGAGGTGTTCTCTT ACACGTTGCCATTGTTCAGGCAGCTCTTCCACAAGGAATTGTCCCATTTGTGTTTGCCAAGGAATACAATGTACATCCTG ATATTCTTAGTACAGGGTAAGTATAACTATAACTAACTATACTTTGTGCTGTACCTTGGAGGGGGGAAATAGCATAACTT TTTAATTTAATCCTAATGAATAGAGCTTGGTGAATTAAATGTGTGCAGTGTTATTTTTGGGATGTTGATCGCATTGCCTA TAACGCTGGTTTATTACATCTTGCTGGGGCTATCAAGTATGAGCTGAGCTGAATGAAGAACACAAGTGGCATCCATATAT ACAAGCTCAATTAAGACTCAAGAGAGAAAAAACTTGTCCAACGAAATAGAAAGAAAAGCATTACCATTGTTGAATGAACT GTCATTACTTAGTGAAAATGTAAAATCATTGCTGTACGTAGCTAATTTATAAATAGAACGTCCTTGGATTATTGAATATT TGTCACTCATCAAGTGGAGAAGGAAATGAAAGCTGTTTTGTGTTTCATGTTGTTTTTAGTTTTTACATTTTATGGATGAA TACAGGACAGCATAGTGCAAAGAGGGAGCTCCACTACAAGACATGATGTGGACTGCTTTGGAATATTGGGGGACAACATT CATAGTCTAAAGTTTCTCTACCTTTTCTCCTCACTCCTTTATTCACATCTCTATTCTTTTAGCTAGCTA
CDS sequence (LotjaGi4g1v0464500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCACGTTAACAGATTTCTATCATGTGATGACTGCAATGGTTCCGCTTTATGTGGCTATGATATTGGCCTACGGCTC AGTGAAATGGTGGAAGATCTTCTCCCCTGACCAATGCTCTGGCATCAACCGCTTTGTTGCTCTTTTCGCGGTTCCTCTAC TTTCTTTCCATTTCATCGCCTCCAACAATCCTTACCAGATGAACTTCCGCTTCATAGCTGCTGACACCCTTCAAAAAATC ATCATGCTCGTCGTTCTCGCCATTTGGGCTAACGTCAGCAGAAGGGGGTGTTTGGATTGGACGATAACCCTGTTCTCCAT TTCCACCCTGCCAAACACGTTGGTGATGGGTATCCCGTTGCTCAAAGGGATGTATGGCGAGTTCTCAGGGAGTTTGATGG TTCAAATTGTTGTCCTCCAGTGCATTATCTGGTACACCTTGATGCTGTTCTTGTTCGAGTACAGAGCAGCAAGAATGCTG ATCTCTGAGCAGTTTCCAGACACAGCTGGCACCATTGTCTCCATTCATGTGGATTCTGATGTGATGTCTTTGGATGGAAG ACAACCCTTGGAAACTGAAGCTGAGATTAAACAAGATGGGAAGCTTCATGTGACTGTGAGAAAGTCCAATGCTTCAAGAT CAGATATCTTCTCAAGAAGGTCTCAGTCTCAGTCTCAGTCTCAGGGTGTTTCCTCCACAACTCCTCGCCCTTCAAATCTC ACCAATGCTGAGATATACTCTCTACAATCCTCAAGGAACCCAACTCCAAGAGGCTCAAACTTCAACCACACAGATTTCTA CTCCTCTGATGTTCATGGGTTGTCAGCAACATCAAGAGGACCAACACCAAGGCAATCTAACTATGATGCTATTTCTGGTG GAACAGGAAACTACCCTGCACCCAACCCTGGGATGTTCTCGCCCAAAAATGTTGCTGCCAGTGCTAATGCAAAGAGGACT AATGGTCAAGTTCAAGCACAGCAGAAAGCAGAGGATGGGAATAAGGACCTTCAGATGTTTGTTTGGAGTACAAGTGCTTC CCCTGTTTCAGACGTGTTTGGTGGCCATGAATATGGACTTCATGATCACAAAGAAGTGAAATTGAATGTTTCTCCTGGAA AAGTGGAGGGTCTATCTCAAGAGGAGTACCAGGTAGAGAAGGATGATTTCAGGTTTGGAAACAGAGAAACGAAAGTTGCA AAAGCTATGCCTCCAACGAGTGTGATGACAAGGCTGATATTGATCATGGTGTGGAGAAAACTTATCAGGAACCCCAACAC CTACTCCAGCCTAATCGGTCTAACTTGGTCACTCATTTCATTCAGGTGGAATGTTGAAATGCCTGCCATCATTGCAAAGT CTATTTCCATATTGTCAGATGCAGGGCTCGGCATGGCCATGTTTAGTCTTGGGTTGTTCATGGCTTTGCAACCAAAGATG ATAGCATGTGGAAATTCCATAGCAGCTTTTTCAATGGCTGTGAGATTCCTTACAGGTCCGGCTGTCATGGCAGCTGCTTC CATTGCTGTTGGACTCAGAGGTGTTCTCTTACACGTTGCCATTGTTCAGGCAGCTCTTCCACAAGGAATTGTCCCATTTG TGTTTGCCAAGGAATACAATGTACATCCTGATATTCTTAGTACAGGTGTTATTTTTGGGATGTTGATCGCATTGCCTATA ACGCTGGTTTATTACATCTTGCTGGGGCTATCAAGTATGAGCTGA
Protein sequence (LotjaGi4g1v0464500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MITLTDFYHVMTAMVPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYQMNFRFIAADTLQKI IMLVVLAIWANVSRRGCLDWTITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFLFEYRAARML ISEQFPDTAGTIVSIHVDSDVMSLDGRQPLETEAEIKQDGKLHVTVRKSNASRSDIFSRRSQSQSQSQGVSSTTPRPSNL TNAEIYSLQSSRNPTPRGSNFNHTDFYSSDVHGLSATSRGPTPRQSNYDAISGGTGNYPAPNPGMFSPKNVAASANAKRT NGQVQAQQKAEDGNKDLQMFVWSTSASPVSDVFGGHEYGLHDHKEVKLNVSPGKVEGLSQEEYQVEKDDFRFGNRETKVA KAMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLISFRWNVEMPAIIAKSISILSDAGLGMAMFSLGLFMALQPKM IACGNSIAAFSMAVRFLTGPAVMAAASIAVGLRGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPI TLVYYILLGLSSMS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 397 | 397 | 8.5E-290 | – | |
| PANTHER | 1 | 397 | 397 | 8.5E-290 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| TIGRFAM | 1 | 570 | 570 | 2.5E-162 | ||
| Phobius | 6 | 28 | 23 | - | – | |
| Pfam | 9 | 565 | 557 | 6.5E-198 | ||
| TMHMM | 10 | 28 | 19 | - | – | |
| Phobius | 29 | 39 | 11 | - | – | |
| Phobius | 40 | 59 | 20 | - | – | |
| TMHMM | 41 | 61 | 21 | - | – | |
| Phobius | 60 | 70 | 11 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| Phobius | 71 | 90 | 20 | - | – | |
| Phobius | 91 | 101 | 11 | - | – | |
| TMHMM | 100 | 122 | 23 | - | – | |
| Phobius | 102 | 120 | 19 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 132 | 154 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 425 | 273 | - | – | |
| MobiDBLite | 208 | 240 | 33 | - | – | |
| MobiDBLite | 209 | 240 | 32 | - | – | |
| MobiDBLite | 271 | 308 | 38 | - | – | |
| MobiDBLite | 271 | 293 | 23 | - | – | |
| PANTHER | 399 | 570 | 172 | 8.5E-290 | – | |
| PANTHER | 399 | 570 | 172 | 8.5E-290 | – | |
| Phobius | 426 | 443 | 18 | - | – | |
| Phobius | 444 | 454 | 11 | - | – | |
| TMHMM | 455 | 477 | 23 | - | – | |
| Phobius | 455 | 475 | 21 | - | – | |
| Phobius | 476 | 486 | 11 | - | – | |
| Phobius | 487 | 509 | 23 | - | – | |
| TMHMM | 487 | 509 | 23 | - | – | |
| Phobius | 510 | 514 | 5 | - | – | |
| TMHMM | 514 | 536 | 23 | - | – | |
| Phobius | 515 | 536 | 22 | - | – | |
| Phobius | 537 | 547 | 11 | - | – | |
| TMHMM | 546 | 568 | 23 | - | – | |
| Phobius | 548 | 567 | 20 | - | – | |
| Phobius | 568 | 574 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0464500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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