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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0000500 |
| Transcript ID | LotjaGi5g1v0000500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chlorophyll a-b binding protein, chloroplastic; TAIR: AT1G76570.1 Chlorophyll A-B binding family protein; Swiss-Prot: sp|P22686|CB2_CHLMO Chlorophyll a-b binding protein of LHCII type I, chloroplastic; TrEMBL-Plants: tr|C6TAC2|C6TAC2_SOYBN Chlorophyll a-b binding protein, chloroplastic; Found in the gene: LotjaGi5g1v0000500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:116928..123412) extracted from Lotus japonicus Gifu genome v1.2.
CAAAAAAGAAAAAAAAAAGTTTCCGTAGAATAAAATGATGAGGTACATGTTGTAGCACGAGGAACAAGGCAGACAGTAGT GAGTGGCGAGGAGAGATGGTTTTGGTTCATCCAGTAGGAGTAGGAGTAGGAGTTGGGGTTTGCCGTGGTTTCCTGTCTCT CTCTGTAAGTTATGCCGCAAAAGTAAAACCGAGAAGAAGGTTCTTCTGTAATGCTTCATGGCAAGAGGTTTCTTTTCGTT TCGTTTCTTTCACCCAATGAATGATGAATTATTCAAGATAATTAATTAATTAATGTTCTGTTCTGTTCTGATTGAAGCTT GCGGGAGTTTTACTATTCTCAGCGATCCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCGTTAGGTGAGTCGCTTCG GAGGAACATGGAGGAGAAAAAGAAATTCGCTCTAGAAAACTCGTCCAAATTCAACGCCTTGGCCGACCAGGCCCAAAAGG AGAGGTAAATATCTTATCTGTATCATTCATTCATTCGGATACTTGATTATTGGTCAGTGTCATTATATATTTTCAGCTTT TGGTATGGAGAAAATCGGCCTCGTTGGCTTGGTCCTATTTCTTCATATGTCTACCCATCATATCTTACTGGGGAACTGCC TGGGGACTATGGCTTTGACATCGCTGGCTTTGCCAAGGATCCTGTCGCATTGCACAAATACTTCAAGTATGTCACTCATA TTTTTTATTTTTATTTACTATGCTCATTCCATGCTGATAATTAAGAAATATTAAATATGTTCATTGTTATCATATAATAT GGCTAGTATGAAGAATTTCTTCTAAATAGCTTTTCAATCATCAAAATTTTGACAAAGAAGCTCATAAAAATGTTTATTCA TGATTTCTTTTATATTGTGTGAACCTTTTTTGAATTCAGATTCTGAACTGATCATTTTAACTTCTTTTATCATTAAGCTT CGAGATTTTGCATGCTCGGTGGGCTATGCTTGCATCTCTTGGTGCTCTAATTCCTGAATTATTAGACCTATTTGGAGCCT TTCACTTTGTAGAACCTGTCTGGTGGCGTGTTGGCTATTCAAAGCTCAAGGTTATCAAGTCCTGTCTCTTTGACCATTTT TGTACAGTTCGTCTTATCAAATTGTTGAGCTTTTTCATGTCCAAGTTCGGGAATTAAATGTACGATTATTCTCCATTACC CACTCAGTCAATCTATTAGTTAAAAGGGAAATCGTGTCTCTTATTTAATGTTGGCCAACAATTTGTTCTCCATAAAGCTG CATATGCTCTAGACATGGCAAATGAGTATTTCCATATCTAACCCTATAATTCATTGACATATTCTTTTCTATTATTGTAC TATGAACTGAAACCAGTTGATCCGTTCTTGCGTGAGAAAAATATGCAGCTATTATCTTTTTCAGGATGACTTTATGAATG TGTGCTTTTATATTGAGTAAACTGGTAAATTATGGTAATGTAATCAGCTCTCCTTGCTTACGAGTCTTTCAATTTTTGAA GGGAGATACTCTAGATTACCTTGGCATCCAAGGTCTTCACTTAGCTGGAAGCCAGGGAGTGGTTGTGATTGCTATTTGTC AAGCACTTCTTATGGTAATGCTTGTATTAGTTGTATCCACTATCTATTGAATGATAAACTTGTATTAGAATCAGTGAGTA AGATATTACACACTATGAACGTATATAAAAGTTCATGTAGAAGAGGCAAATTGAAATACAATTAACTACTGATCAGAATC AGTTGAGGGAAAACTAACTAAGCTGCTAACAACTAACTTCTATTCTTAGCTTCTATACAATTAACAACTAACATCTTGAC TATAGTAGGTAATACTCCCCCTCAAGATGGAGAGTCAATATTTTTGATCCCCATCTTGGATAAGAGTAGTCTGAAAGTAG GCAAGGGAAGTGCCTTGGTCAAGATGTGCCCGAACATGAAACAAATTAATCCCTCAATCCCTCATTGACCTTGTCATGAA CAAAGTGGCAATCGAGCTCAATGTGCTTAGTTCATGCTTGAAATGTAGGATTTGTAGCTGTTAGATATCTTGTAAATAAG TAGGATATCCTTTATTAATTGTAAATAGGTAGCATAATCATGTAATTAGGGAAATAAGATTATTTTGTATTTATTGTACC TTTATGGTACCTATTATATATAATGAGCTCCGCTGTGTAGTTGAAACACACGGATTCACCAAATTCCTCATCTCTTTCTT GTCATTCAACAGTAGCAATATGAACCGAGGCCTGATTATCACAGTGAAACAGCTGCTGAACCAGTGTGAACTTGAAAATC ACTGAGGAGGTAATTTAGCCATGTGATTTCTGAAGATACTGCTGCCAAACCTCGGTACTCAGACTCGTGAATCACCAAGA AACCTGTGGTAGATCTTCGGGTGTCTAACCCGTGGTAGATCTTCGGGTGTCTACACAGGTGGCCCAATCAGCATCCATAA AAGAGTAAGAAATGTCAGGCCGAGAGAGGGTGAGATAGAGTAATCTCCTAACTAATCTCCAGTATAAACTGTTGCAGGAA GCAAATCACCATCAGGATCATTCAGTTTGAGCTGAGTTTGCGTAGCAGTGTAGTAGGTTTAGAACCAAGGAAACCAGTGT CTTCTAAAAGAGATAAGGTATACTTTTCAATGAAAGAAAGATCCCAGCCTGTGTTCTTGCAATCTCTAGGCCAAGAAAAA AAGTGAAGAGTGCTGAAGTCTTTGAGCTGTAAATGTGCTTGCATTTCAGATTTGAGAGAAGCAATGAGTTTTTGATTTGC ACTAACTATGATGATATCATCAACATAAACTAGAAGTGCTATAAAGGAAGCTCCTGAATTCTTGGTGAAAAGTGAATAAT CTGATTTGGATTGTGTAGATCCCAACTTTAACAAAACTGCAGCAAACTTACTAAACCATTGTCTTGTAGCCTGCTTCAAG CAAAAAATGGACTTGTTCTGTTTACAAACCTTCTTTTGGGTTCCTTTTGTCTCCCCCTCAACATGATAGCCAAGGCGTAG GTCTATGTCAATTTCTTCAAAAAGATCTTGAAAGATGAATGGAACCAACCCTTAACACTGATATGCGTGTCATATTTGGA AATGTGACTGAGGAATTGTGGAGGAAATGGAAATCATGAAACACTTTACTATCAAAGCATACATAGTGGGTAGCACCCGA GTCCACTATCCACTCAAAAGAAGATAAAACATGAGTCAGAATACTAGAAGTGGTCAAAACAATACCTGCTTCTCCTAGGG ATGCATCAGGATTGTTAGGATCTGAATAATCCTAATGGCACCCACAATTAGAGGAAGACAAAAATGGATATTGTTTTGGA CCTAGATCTCACATGAAGAAGAGACCTTATCCAAAACCCTAGCAGACAAAGCTAGGAGAAGATAAGAATGTAATATATTA ATGAAAAGATCCTTTTTACAATGAATGACCTCCTCTTTTATAGTGGGATGGTCCAATATCCTAATACTATACTAGTTGGG CCCTTGGGCCTAAAAAATCCTCAGCCCAGAGAGTTGGTCGCCCTATGGAGGTCTCGCCTAGCCGTCCTATAGTCGCGTCA AGGTCTAACTCTGGGCGGGTCCTATCATGAGCAGGTCCCGCCCAGTCCAGATATCTTTGGTATTTTTTATATATATTTAA ACTAGGAAACAAATGCTGGAAAATAAACCAGAAGGTAAACCTTCTTACAAGGGAAAATCCCTTCGAAGGGCGAAACCCTT TTACAATACTCAATACTCAAATCATACCCTAATCTAATGAGAGAGCTCTTATTTATAATAAACTAATCCTAATAAAGATA GACTTAACCACTAAGAGATAAAGATAGACTACCAAAAATAAAGTTAAACTCTTAAAATAAAAGATAGACTCGTAAACTAA AAAGATAGAAATAAAATAAACTCAATCCCTTATATTTTGAACCTAATAAGGTGTCACATCACAAGTATGAGAAGAGGATG AATACAGTTGATTGGACAGAAAGTGGTTCAGTTGTTGACATTGATCTAGAGACAGAATTTGCAGAAAGCTCACCAGATGT TTGAGAATTTGTATCTGATACTTGCCCTATGATGGCTGAAGAAGGTAACTTCAATTTTCGCTTGGACCCTGGTGGATAAC CATGCAGCTCGAAGTACCTCTCAGCTGTGCCACAATGTGAACATGTTGGTTGATTCTTCCAAGACTTGTACTTAGATCCA GAATCTTGAACTCCTTTAGAGTTAGGCTTCGGAGCAGCTAACCTTACAGCAAAAGCCATGAATGAATCATTAGAAATTGG AGCAGAACCAACCTCCCTCTGCCTTTCTTCTTGAACAACCAGAGAGAACACCTTGTTGATTGAGGGTATAGGTTCCAGAA GTAATACCTGGCCTTGAATTTGGGAGAATGAGTCATTCAACCCCATGAGAGAACACATAACATATTCAGTCTTGTAATAT TCCAAGAGAGGTCGAATTCCTCCACAAGTGCAATTGCAATTTTGCTTGTAAGTGACTAGTTCTTCCCAAATTGTCTTGAG TTGAGTTTGGTGTAGTAAGTGCGCTGAGTAAGACTCATGAAATCATGGCGTAATTGGAAGATTCTTGGATCATTTTTCTA CTGGAAGCGCTCTGTGAGATTCTTCCATATCTCTGAAGCAGTGTCTGAATACATACTGGTGGTAATGTCCTTTGAAACAG CATTGAAGATCCAGGAAATGACCACATTATTGTTTCGAATCCATGAATTGAGCTGTGGATTATCTTCTTCGGGCCGAGGA AGAGAGCCATCAACGAAAGGTACCTTGTTCTTCATGGACAAAGCAACAAGTACAGCACGGCTCCAAGTGTTGTAATTGGA TTCAGTGAGTGGTTGAGAAACAAGACGAGGTCTAGGCCATCGGAAAGATGAAGGAAGAAATGATTGGCAATGTCTTCCAT AGCTACAAATAGAAATCGACGATGATGATTAAGCTAGATGAAGACGAAGATGATGCCAAAGAAAGAATGATTCATGAAGA AAGGAACAACATGAAGGCTGTGAAATCAGAGTCACGGAAAAATACTATCTGATACCATATTGAATGATAAACTTGTGCTA TTATAATCAGTGAGTAAGATATTACACAGTATGAACTTATATAGAAGTTCATGTAGAAGAGGGAAATTGACATACAACTA GCTACTGATCAGAATCATAAATGAATCTGTTATTGAGGGAAAACTAACTAAAACTACTAAGAACTAACTTCTATTCTTAG CTCCTATACAATTAACAACTAACATATTGACTATAATAGGTAATACTATCCACCTTCGCCTTATGAGCTCTGCTAACATT ATTTATTTCTTGTGACATTTGTCTTCCAATATAAGTTTTTGAGCCTTGTGATGTGAGTGGTGCCTTGGTGTAGCATATAT TGGATGGCAGTCTTTTTTTTAGCTCTACAAACGTAACATGTTAAAAAGACTTTCCCAGGCTTTTCTCATGGCCGCTCATC CTTCGTAGGTGGTCTGAGATACCTGACTGCAACTATAAAATCATACTTAGTTCGTAACAAAAATTTATATTCTCCTAAAT CATAGTTTCAATCATTGTAGCTGCTGCTTAAGTACAAAGTTTATCACTATCAGACAGTCACATTATATACTAATTAGAGA TTCTTGTTATTTAACAGGTTGGACCAGAGTACGCTAGATATTGTGGGAGTGAGGCATTGGAGCCTCTAGGAATATATCTA CCTGGTGATATAAATTATCCTGGAGGAGCATTGTTTGATCCTTTAAATCTTTCAAAAGATCCTGAAGCATTTGCAGAGCT GAAGGTGAAAGAAATAAAAAATGGACGCTTAGCAATGATTGCCTGGTTAGGCTTTTACATGCAAGCAGCTCTGACGGGTA AAGGTCCGGTGCAGAACCTTCTGGATCACTTCTCAGATCCATTTCACAACAACTTGCTGGGCTCCCTCAACTTCTTGAAA GTAATCAAGTATTAGTAGAAAGGAACTTACATCCATTCGGTTGCTCTTTTTCTAACTTTTTTTGGAGTTAATTCAGGTCA AATGGTATAGCCACGGTGATTGTCTCTCGCCACATTCAATTGTCAACTCCCACTCCAAAAGAAACTGGTCTTTACCTTTT TTTTTTATTGTTTTTAGCGAGAAGTACTATTTAGTCTCGGACAAAATATTTGTGATAGTTTATATCACAAACTTTGTAAT ATATCATTGGGTGTCTGCAATGCAATTATGTGGGCAATGGATGCATAAATGCATTGAATTAGTTTTCATTGTATGATTGT AAGGGCTTGAATTTTTGCGCTGTCTGAAAAGGCAAAGGTAAGGCTCCTTTTGTTTGGTGATGTCTACCCATTGAAAGTTT ATAAAATAGTAATTGATTAGGTATTTAAGTTAGGGGAATTGTTATTTGAGAAAAAGTTTGATGCACCGACGGTGTAAAGT TTTTT
CDS sequence (LotjaGi5g1v0000500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTTTGGTTCATCCAGTAGGAGTAGGAGTAGGAGTTGGGGTTTGCCGTGGTTTCCTGTCTCTCTCTGTAAGTTATGC CGCAAAAGTAAAACCGAGAAGAAGGTTCTTCTGTAATGCTTCATGGCAAGAGCTTGCGGGAGTTTTACTATTCTCAGCGA TCCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCGTTAGGTGAGTCGCTTCGGAGGAACATGGAGGAGAAAAAGAAA TTCGCTCTAGAAAACTCGTCCAAATTCAACGCCTTGGCCGACCAGGCCCAAAAGGAGAGCTTTTGGTATGGAGAAAATCG GCCTCGTTGGCTTGGTCCTATTTCTTCATATGTCTACCCATCATATCTTACTGGGGAACTGCCTGGGGACTATGGCTTTG ACATCGCTGGCTTTGCCAAGGATCCTGTCGCATTGCACAAATACTTCAACTTCGAGATTTTGCATGCTCGGTGGGCTATG CTTGCATCTCTTGGTGCTCTAATTCCTGAATTATTAGACCTATTTGGAGCCTTTCACTTTGTAGAACCTGTCTGGTGGCG TGTTGGCTATTCAAAGCTCAAGGGAGATACTCTAGATTACCTTGGCATCCAAGGTCTTCACTTAGCTGGAAGCCAGGGAG TGGTTGTGATTGCTATTTGTCAAGCACTTCTTATGGTTGGACCAGAGTACGCTAGATATTGTGGGAGTGAGGCATTGGAG CCTCTAGGAATATATCTACCTGGTGATATAAATTATCCTGGAGGAGCATTGTTTGATCCTTTAAATCTTTCAAAAGATCC TGAAGCATTTGCAGAGCTGAAGGTGAAAGAAATAAAAAATGGACGCTTAGCAATGATTGCCTGGTTAGGCTTTTACATGC AAGCAGCTCTGACGGGTAAAGGTCCGGTGCAGAACCTTCTGGATCACTTCTCAGATCCATTTCACAACAACTTGCTGGGC TCCCTCAACTTCTTGAAAGTAATCAAGTATTAG
Protein sequence (LotjaGi5g1v0000500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLVHPVGVGVGVGVCRGFLSLSVSYAAKVKPRRRFFCNASWQELAGVLLFSAIPFTAVKAIANSPLGESLRRNMEEKKK FALENSSKFNALADQAQKESFWYGENRPRWLGPISSYVYPSYLTGELPGDYGFDIAGFAKDPVALHKYFNFEILHARWAM LASLGALIPELLDLFGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHLAGSQGVVVIAICQALLMVGPEYARYCGSEALE PLGIYLPGDINYPGGALFDPLNLSKDPEAFAELKVKEIKNGRLAMIAWLGFYMQAALTGKGPVQNLLDHFSDPFHNNLLG SLNFLKVIKY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 6 | 27 | 22 | - | – | |
| PANTHER | 27 | 324 | 298 | 7.9E-170 | – | |
| PANTHER | 27 | 324 | 298 | 7.9E-170 | ||
| Phobius | 28 | 157 | 130 | - | – | |
| SUPERFAMILY | 101 | 320 | 220 | 1.57E-59 | – | |
| Gene3D | 111 | 326 | 216 | 1.5E-67 | ||
| Pfam | 120 | 295 | 176 | 4.9E-42 | ||
| Phobius | 158 | 181 | 24 | - | – | |
| Phobius | 182 | 200 | 19 | - | – | |
| Phobius | 201 | 226 | 26 | - | – | |
| Phobius | 227 | 330 | 104 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Photosynthesis, light harvesting | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0000500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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