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LotjaGi5g1v0006200.1

Overview

Field Value
Gene ID LotjaGi5g1v0006200
Transcript ID LotjaGi5g1v0006200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description AP-2 complex subunit sigma; TAIR: AT1G47830.1 SNARE-like superfamily protein; Swiss-Prot: sp|Q84WL9|AP2S_ARATH AP-2 complex subunit sigma; TrEMBL-Plants: tr|A0A0B2RY87|A0A0B2RY87_GLYSO Phosphotransferase; Found in the gene: LotjaGi5g1v0006200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:1487645..1492969) extracted from Lotus japonicus Gifu genome v1.2.

GGACTTTGAAAGTCAAACAAGGCAGGAGAGAACACAATAACCTCGTCTCAAGAATTGTATCAAAATCAATCAATTTAGCG AAAATAATAAAAAAGAAAAAGAAAAAGAGCTGGAAAACAAAGTGGTTGTGGTTGCTCAAATCAAATCAAATCAAATAAAA TCATCATCGTCCCTTTGCATTTGCATTTGCAGTTGCAGTTGAAAACAACCTCAGCGGGGCTACGTCGTTTCCCCCAAATC CCTAAATTGCAAATCGATTTCTATATCAAATGGTACTCATTGTATTCTATTTGATCTCATTCTCTGTTCGATTTCAATTC TTCGTTTTCTGATTTTCCCTTTTTCGCATTCGCAGATCCGATTCATTCTGTTGCAGAATCGCCAGGGGAAGACCCGTTTA GCCAAATACTACGTTCCTCTCGAGGATTCCGAGAAGCACAAGGTCGAATACGAGGTAGGTAACATAACATGTCTTCAATT TTTCCCCCATTCCTGTTCCTAATTAATTTTCTTTAATTTTCCTTTTCAGGTTCATCGCTTAGTTGTAAACAGAGACCCCA AGTACACCAATTTCGTTGAGGTCATCCTTCTTCAATTAGACTTAGTATTATTTGCTTTGCTTTGCTTTCATAGAAATGAG AACTTTGTCTCTGTGTGATTGAGTTATTGATCGACTTGCTATGCAGTTAGTTGTTTGTGTTCTAACTTCTAACCAATTGG GGTAACATCTCTTGCAGTTTCGTACCCACAAGATAATATACAGGCGATATGCTGGCTTGTTTTTCTCGCTCTGTGTTGAC ATCACTGATAATGAGTTGGCTTATTTAGAGTGCATCCATTTATTTGTCGAAATATTGGATCACTTCTTTAGCAATGTGTG CGAGCTGGATTTGGTTTTTAACTTCCACAAGGTTTCTTCTTATTTAACACCTCATTCTGATGTGTGTTATTCCATCATAT TATTCGTTCTTTTTCCGGTTTCAGACGGGTAATTCCTAGCCTGTATTTGATTGTTATATGAGATAACTGTGATTGTTTAG GTATATGTCTATCCTCTCAAGTTTCTAGTTACAGTGTTGTGCTTTATTTGACTTCTATTGTTGCTCTTTATCTGGTTTCT GCTGCATTACTCTTGAGCATGTATTAGAATATTGGCTAAGCATAGCCTGCACTGATCATTATCACTGGAAATTTCCAGTT TCATGTATTCTCTGCCTCTTTTGTTATATTAACAATGTGTTATTGAGTTTATAACAGACCATACCTCAAATGTAACTTTA TCTACTGGTTACATTATCATCCACTAGGGGATTAGTTTCATGTTGTATCTAATACATTTTGTTTTCTTTCAAGTAGAGTT CATCATTGTTGAGGGTTGGGCTTGTACAAGTTATTGATCACAATACTGTTTGCGATTTTGCATTATCTTTTTATTGTTTC CTTGCTCATGTGGTTTACCTATCTGTCTTAAAGGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGA AACTAGCAAGAAGGTATGCATTTCTTTGGTTATTAAGGGCTTGTTTAGTTTGGGAAAGTGTTTTCTATGTTCATTTCCTA TTTTTAATATCAATTCAAAAATGGTTCCTGGTTTTCACTTTGCTTTCTATTTTCAGATATTTATATAGGAAATTATTTTT TGAAAAGATTTGAAATAATGAATTTTTTTGTTTTCTTTTTTTCTTATACCAATATCTATAAACAGGAAATAAAGTAAAAA CAAGGTAATACTCTGTAATAAAAAGTGGAAATAGAAAATGAAAACAAAATATATTCTTAAAATAAATAGGCACTAAGCTT TTGACACGTGGTTACTAGTGTAAGGTTTAAACTTCAAACTGTGTTATTACCCTGTGATTTCAGGCCTAGTTATATGGGTG CGTTTGATTTTCTAAAAAATGATGCACTGGAAAAAATGAAACTCTTTGTTCTTGTTTGATTTCAAAAATGGATGGGACCA GAAAAAATAAAAATAAAATTGTTATTCACTCAACCATTGGACAACTTTGTCCCACCACAACACTATTTAAAGACAATATA TCACTCTCTTCCTATCCATCCTGAGTCCTGACCCTCTTCCTCATTCTCGCCCTTATCAAAATGCAAACAACTGCAACTTA CCCTGCCACTAACCCTTTTCCTCCCTTTCAAAAGCACTCACTGCTGCAATCATCGGTGGATACGGACAAATGTTTCCATA TTTTAAGCTTTGTGCTTTTGTGGGTTTGTGCAATGTTTCATGTCGCCCATCTGACATCTGTAATGACAACAAATCCATGA CGAATCCCTGAGTGCAAAGATCAGATTTAAGTTTGCATTTTTTCATGAATCATGATAGTTTCTTAAGGAAATAAAACTCA TTTTTAAGATGACCATTCTGCGCTGCATGAATTTTGCATTAGATAGAAGATATTTAGTAAATTTTACATTATTCTTGTGT CGTCGCTTAGTGTGCAACTGTGCATCATATGCACCCAGTGAAAGTGAGACAGAACCTCAATCTCATAACAATTAACAAAT TTGTTTTTGTGCTTGCAGGCTATCATTGAGAGAATGGGGGAACTGGAAAAACTAGAGTGAAATATTACATTTCTGCAGAA TCATAGTGGTTGGGAGATTCTCACAATTTTCTCATGCACTTGGCATGATTCTTGTGTTTCAATTGTGATTCAGAATTTTG AAAATATTTTCCCTTGAGCCATGTATTCAGCACGCTCTGCCTAGGCTTCTTACTCGGCTTGTGTTAATACATTGAAGACA TTCACATTCATATGATCAGGTTTTCTTGTAACCTTTATTCCATTGTCTCTTTTGTTTGTTAAAGAGTTTCTTTGCACTTC TTGGTGGTTTGTAACATTCCAGAGAAAAATAACTTTAAATAACTATAATGTATAAGCATATTCAAAATGATTGCTTTTTA TGATACACAAGAAATGCTAGTGAACAAGTGTGGTTAATGTTTTTATCATCAGTTAATTGAGCCCTGGGTGTCCTAGGAAA TGAGTAGATTTAAGCGTGATTCTTTCAAGTTTAAGGTCTTGTTGCTATGTAACTATCGTGTGATTCCTCACGTCAGCATC TTTGGATCAACTTCTCTTTCTTCGGAATAAATTTTGAAAATCAGAAGCTACCCACTGAAGTTTCTCTTGAGAACTGATTC TGACTTTAAAATCAATGGTAGAAAGGTTTTTAAATATGCACTTTACTAGTTAAATCCACAAGAGTAACTCGCAAGTTTTG TGCTGCTTCCTATATATGCTCGTCAAAACTTGGTCATATAGAAATAAGGCTTAATTGCACTTTTGGTCCCCCAACTATGG CCTTCCTGCGAAAATCGTCCCTAAACTTCAAAATTAGCAAAACTCGTCCCTCAACTATACACACAGTTGCACTTTTGGTC TTCCGTTAGCATTCCGTCAGAAAACTAACAGAATATTCCGTTAAAAATGAATTAAAAAATAAAGAAAAAATAAAATTGAG AAAAAATAGTATTTTAATTGAAAAAATAAAGAAGCTCACTTAAATCCGTTTCCTCTTCCTCCTCCTCTTCTGTAGATCAT GGTTCTCGTTCAAAGCTTCAAAGTTTCTGGGTTTTTGGTCGGGTTTCTGGGTTACAAGCTTCGAGCTCCCCCTCTCCAGA CACCATATGATAGGTTGAAGCTGTATCTGTAACAATGGTTTGAGATTTGAAAAAAAAAAAAGTCTTGGATTTTCTTCTCT GGTTTTCCTTTCTCAGTTATGGTAGATCTATTGTGAGAGGGAAGAAGGGGTTTGTGGGCTCAGTTTCTGGGTGGGGTTTG GGGTGGGTTCCGGTTGGGTTTCTGGGGAGGGGTGGGGTTGGTGGAGGGAGAGGTGGTTCTGGGTTGTGGTTTGCTGGTGT GGGTTCGGTGGAGGGAGAGGTGCGAGTGAGAAAGATGAGATGAAGATATGGAGGGAGAGGTCTGCAACTCCTTCTTTTGG GTTGTGAAATGGATTTCTAATTTCATGAGGAGATGAGAAAATGGGATCTGCAAAGAGTGTTGAAGAAAAACCCAAAACCC CTTTCTCTCCAGCAATCCGCTCCAATTCAATTTCAGTATGGAGAGTTTGTGTTGATGGTTGAGGGAGGTAGTGGTGAAGA GGAATGAAAGGAGAAGGGAGGGGAGGATGAGGGATTGAGGTTGATGAAGATGGAGAAAGTGAGGAATGAGGAGGGGGAGG ATGAGTGGTGGTTATATTGAGGAAGATGAAGAAATTTGGTGACTGGATTGTGAATTGTGACGGATTATCTCCGTCACTAG TCCCAATCTGTTAGATTTCTGACGGAATGCTAACGGAAGACCAAAAGTGCAACTGTGTGTATAGTTGAGGGACGAGTTTT GCTAATTTTGAAGTTTAGGGACGATTTTCGCAGGAAGGCCATAGTTGGGGGACCAAAAGTGCAATTAAGCCTAGAAATAA AACGATGAATTGCATTCTTGTAAAGCTCATCACATGAGTATTACACTTGAAGCAATGCTGTACTTGTACCACTCTTTGGG AGTTTGTACCTAATTTCTTCACAAACAAAAAGGAGAGGTAGGTCTAGCCCACCTGTCTTGGATGGGGGGAATGAGCTGCT GATGCTGCTGTTTCCCAGAGATTGAAATTGAAGTAATCTTGGATCCAAATATTTCTTGTGAAGCAGGGAAATGGGGAATG ATTGCTTGGACACATGGACTCCCTGCAGAAGAGTGATGGTTCCTTCCACTTTGCCAATTAGGATATTGGGTCCTAATAAT ATTGCAATTCACAGCAGACCTGGATTGAGCTGCTTGTTGCACCCCCCAAAAGTTTTGCTGCTCTTGTTTACTTGAGACTG TTGAACTATATTGAGTTCCACGTATCATGCTACCATTATAATGAGGTTGCTGCAACCGAACCTGCAGTCAATCAAAGCAT TAGGAGTTACTATTAGTATGATAACAAGATCAAGGGTGGCATATTTATGAGGACATCAAATTGCATGTTTTTAGTTGTTA AGATTAGTTTTCATTTTTAGCAGTAAATTTTAGCCATTTGGACTAGGGAAAGAAATAGGTCAGACTCTTCATAGGGACCT ACGACCTAGTCTACATCAGACTCAGACCACATTAATAAATAGACAAGATTAAGGCTTTGTCAAAAACCTATTTAGTTAAA AGTCTAGTCTCGGACCAGTCATAAAGCCTTATAAATCTAACAAGTCGGTGTATTCAAACAAATTTAACTTATAGGAATTT ATTCTTTTATTATACTAGCTTTTTATTTTAATATTGTAAAATCAT
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0006200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATCCGATTCATTCTGTTGCAGAATCGCCAGGGGAAGACCCGTTTAGCCAAATACTACGTTCCTCTCGAGGATTCCGA GAAGCACAAGGTCGAATACGAGGTTCATCGCTTAGTTGTAAACAGAGACCCCAAGTACACCAATTTCGTTGAGTTTCGTA CCCACAAGATAATATACAGGCGATATGCTGGCTTGTTTTTCTCGCTCTGTGTTGACATCACTGATAATGAGTTGGCTTAT TTAGAGTGCATCCATTTATTTGTCGAAATATTGGATCACTTCTTTAGCAATGTGTGCGAGCTGGATTTGGTTTTTAACTT CCACAAGGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACTAGCAAGAAGGCTATCATTGAGA GAATGGGGGAACTGGAAAAACTAGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0006200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRRYAGLFFSLCVDITDNELAY LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11753:SF37
1 142 142 2.1E-95 –
Gene3D
G3DSA:3.30.450.60
1 142 142 7.2E-59 –
CDD
cd14833
1 141 141 2.0637E-94 –
SUPERFAMILY
SSF64356
1 136 136 6.87E-46
IPR011012
PIRSF
PIRSF015588
1 142 142 1.5E-64
IPR016635
PANTHER
PTHR11753
1 142 142 2.1E-95
IPR016635
Pfam
PF01217
1 141 141 1.2E-53
IPR022775

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0015031
Biological process Protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0006200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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