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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0006200 |
Transcript ID | LotjaGi5g1v0006200.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | AP-2 complex subunit sigma; TAIR: AT1G47830.1 SNARE-like superfamily protein; Swiss-Prot: sp|O50016|AP2S1_MAIZE AP-2 complex subunit sigma; TrEMBL-Plants: tr|A0A0B2RY87|A0A0B2RY87_GLYSO Phosphotransferase; Found in the gene: LotjaGi5g1v0006200 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1491176..1492700) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTACTCATTGTATTCTATTTGATCTCATTCTCTGTTCGATTTCAATTCTTCGTTTTCTGATTTTCCCTTTTTCGCAT TCGCAGATCCGATTCATTCTGTTGCAGAATCGCCAGGGGAAGACCCGTTTAGCCAAATACTACGTTCCTCTCGAGGATTC CGAGAAGCACAAGGTCGAATACGAGGTAGGTAACATAACATGTCTTCAATTTTTCCCCCATTCCTGTTCCTAATTAATTT TCTTTAATTTTCCTTTTCAGGTTCATCGCTTAGTTGTAAACAGAGACCCCAAGTACACCAATTTCGTTGAGGTCATCCTT CTTCAATTAGACTTAGTATTATTTGCTTTGCTTTGCTTTCATAGAAATGAGAACTTTGTCTCTGTGTGATTGAGTTATTG ATCGACTTGCTATGCAGTTAGTTGTTTGTGTTCTAACTTCTAACCAATTGGGGTAACATCTCTTGCAGTTTCGTACCCAC AAGATAATATACAGGCGATATGCTGGCTTGTTTTTCTCGCTCTGTGTTGACATCACTGATAATGAGTTGGCTTATTTAGA GTGCATCCATTTATTTGTCGAAATATTGGATCACTTCTTTAGCAATGTGTGCGAGCTGGATTTGGTTTTTAACTTCCACA AGGTTTCTTCTTATTTAACACCTCATTCTGATGTGTGTTATTCCATCATATTATTCGTTCTTTTTCCGGTTTCAGACGGG TAATTCCTAGCCTGTATTTGATTGTTATATGAGATAACTGTGATTGTTTAGGTATATGTCTATCCTCTCAAGTTTCTAGT TACAGTGTTGTGCTTTATTTGACTTCTATTGTTGCTCTTTATCTGGTTTCTGCTGCATTACTCTTGAGCATGTATTAGAA TATTGGCTAAGCATAGCCTGCACTGATCATTATCACTGGAAATTTCCAGTTTCATGTATTCTCTGCCTCTTTTGTTATAT TAACAATGTGTTATTGAGTTTATAACAGACCATACCTCAAATGTAACTTTATCTACTGGTTACATTATCATCCACTAGGG GATTAGTTTCATGTTGTATCTAATACATTTTGTTTTCTTTCAAGTAGAGTTCATCATTGTTGAGGGTTGGGCTTGTACAA GTTATTGATCACAATACTGTTTGCGATTTTGCATTATCTTTTTATTGTTTCCTTGCTCATGTGGTTTACCTATCTGTCTT AAAGGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACTAGCAAGAAGGTATGCATTTCTTTGG TTATTAAGGGCTTGTTTAGTTTGGGAAAGTGTTTTCTATGTTCATTTCCTATTTTTAATATCAATTCAAAAATGGTTCCT GGTTTTCACTTTGCTTTCTATTTTCAGATATTTATATAGGAAATTATTTTTTGAAAAGATTTGAAATAATGAATTTTTTT GTTTTCTTTTTTTCTTATACCAATATCTATAAACAGGAAATAAAGTAAAAACAAGGTAATACTCTGTAATAAAAAGTGGA AATAG
CDS sequence (LotjaGi5g1v0006200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCGATTCATTCTGTTGCAGAATCGCCAGGGGAAGACCCGTTTAGCCAAATACTACGTTCCTCTCGAGGATTCCGA GAAGCACAAGGTCGAATACGAGGTTCATCGCTTAGTTGTAAACAGAGACCCCAAGTACACCAATTTCGTTGAGTTTCGTA CCCACAAGATAATATACAGGCGATATGCTGGCTTGTTTTTCTCGCTCTGTGTTGACATCACTGATAATGAGTTGGCTTAT TTAGAGTGCATCCATTTATTTGTCGAAATATTGGATCACTTCTTTAGCAATGTGTGCGAGCTGGATTTGGTTTTTAACTT CCACAAGGTCTATCTTATACTTGATGAATTCATTCTAGCGGGTGAACTGCAAGAAACTAGCAAGAAGGAAATAAAGTAA
Protein sequence (LotjaGi5g1v0006200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKYTNFVEFRTHKIIYRRYAGLFFSLCVDITDNELAY LECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKEIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
CDD | 1 | 131 | 131 | 1.33791E-89 | – | |
Gene3D | 1 | 132 | 132 | 1.6E-56 | – | |
SUPERFAMILY | 1 | 132 | 132 | 5.04E-45 | ||
PIRSF | 1 | 132 | 132 | 1.2E-62 | ||
Pfam | 1 | 131 | 131 | 1.1E-51 | ||
PANTHER | 2 | 131 | 130 | 1.9E-87 | – | |
PANTHER | 2 | 131 | 130 | 1.9E-87 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. |
Expression pattern of LotjaGi5g1v0006200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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