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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0007800 |
| Transcript ID | LotjaGi5g1v0007800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G04130.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9M8W9|PP211_ARATH Pentatricopeptide repeat-containing protein At3g04130, mitochondrial; TrEMBL-Plants: tr|A0A1J7J138|A0A1J7J138_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0007800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:1775436..1777619) extracted from Lotus japonicus Gifu genome v1.2.
AATCCTTACACGCTCACACACACAGATGAGACTCTGCTACACTCTTCGTTCTCTTATTCGATCCAAAACCAATGCCCAAA GACGCACTTTCACCGTTGCTGCAGGTAATTTTATTTTATACTGAGCTCTGTTTTTATTTGCTGTTGAGGAAGAAATTATC AATTTTCAATGCATAGTATCATCATATCATATATATGTTATGTTGATTATTTTTCTTCATTAAAATAGTTGCTAGTGTAA GATGCCTGTTTTCATTCACTGCTAATTTCCTGTATGCTTTTATTTTCAACCAGAATTTATCTCCTGATTATCATCCCTGG CCCTTGTCATGACTTTGCTTTGCCGCCGATGCAATGCAGTCATTATACTCTCGCAAATGCTGTTGCAGCTTATTTTCTAG GTTAGCAATAGCGTCTTGTGGAGCTAGAGGCTTTAGGCATCAAGAACAATGTCAAAGCCTTATGAGATCTGTCGACATTC TCACTTCAAAAGTTGCCAAAGGAAGCAGTGAGGAGGAAATTATCCGGTCTCTATGCAATGATCAAGCTTGTGATGCCATA CATCTGTCTCCAAACCTTATTAACATATTGCTCCGTCGATATAAGGATGATTGGAAGTCTGCATTGGGCTTGTTCAAATG GGCCAGTTTGCATTCAAACTTTCAACATTCCCCAGAATCATATGACATGATGGTAGACATATTGGGTAGAATGAAGGTAA TGGACAAGTTGAGAGATCTCTTAGACCAAATGCGTTGTGAGGGGAGTATCATCACTCTCAATACTATAGCCAAGGTAATG AGAAGGTTTGTTGGGGCAGGACAGTGGGCAGATGCTGTGAGAATATTTGATGACTTGCAAACTCTTGGCTTGGAGAAGAA CACAGAATCCATGAACTTGTTGCTTGATACCCTATGCAAGGAGGAATTTGTTGAGCAAGCTCGTCAAATTTACTTGGAGT TGAAGCAGCACATTGCTCCAAATGCTCACACATTTAACATATTCATTCATGGTTGGTGCAAAATCCGTCGTGTAGAAGAA GCACATTGGACAATCCAAGAAATGAAAGGATATGGTTGTCGCCCTTGTGTTATAAGTTATTCCACCATCATCCAATGTTA TTGTAATGAACAGAATTTTAGCAAGGTCTATGAGCTTCTTGATGAAATGCAAGCTCAAGATTGCTCCCCAAATGTGGTTA CTTATACTATCATCATGTGTGCACTGGCAAAGGCAGAAAAATTTGATGAAGCTTTGCAAGTAATTGAGAGAATGAGGTCT GCTGGATGTAGGCCTGATACACTTTTCTACAATTCATTCATCTATACATTAGGGAGAGCAGGCAGAATAGATGATGCTAA CCATGTGTTTAAGGTTGAAATGCCTAAAGCTGGTGTGGCCCCAAATACATCCACCTATAACTCGATGATTTCTATATTTT GTCATTATGCAGAAGTGAAGAGAGCTTTTGACATATTGGAGGAGATGGAAGATTCAGGCCTCTGTAAGCCTGATATTCAA ACATACCACCCATTGATCAAGTCATGCTTCAAGATGGGAAAAATAGATAGTTGGTTGAATGAAATATTAAATGACATGGT CAATAAGCATCATCTTGGTCTTGATCTTTCAACCTATACACTGCTAATTCACGGACTTTGTAGAGCTGATAGATGCAAGT GGGCATTCTCTCTGTTTGAGGAGATGATAGGTCTAGATATAGTGCCTAGATACAGAACTTGCTGTTTGCTATTGGAGGAA GTTAAATTGAAAAATATGTATCAAGCTGTTGAGAAAATTGAGGATCTTATGAAGAAATTATAAATGCATTCCCTCAATGT TCAAGGTTTATTTGCTATTTCTTAATTCTGTCTGTGACCTTTATTATTTTGCTAGCTCCTCAATGCTATTCCCTTAATAT ACACTGGCTTTTCAAATTTTGAACTGATGAATTACATGGATGATATTTCTTTTTCCTCTTTTTTCAACGGGGTACAGGTT GTATCACCTATTGACATTACATATAAATGATATATGTAAGAATTCTACATGTAATATTTGCCAAAGTTTGATCAAATATA GTGCCTGTGAAGTATTCCCCCCCCCCCCCCAGGGCATGAGTGGTGGAGATCGAACCTATGAAAATATATTGATGTAGACT TGGTATTATTACCCAATAACTTCA
CDS sequence (LotjaGi5g1v0007800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGTCATTATACTCTCGCAAATGCTGTTGCAGCTTATTTTCTAGGTTAGCAATAGCGTCTTGTGGAGCTAGAGGCTT TAGGCATCAAGAACAATGTCAAAGCCTTATGAGATCTGTCGACATTCTCACTTCAAAAGTTGCCAAAGGAAGCAGTGAGG AGGAAATTATCCGGTCTCTATGCAATGATCAAGCTTGTGATGCCATACATCTGTCTCCAAACCTTATTAACATATTGCTC CGTCGATATAAGGATGATTGGAAGTCTGCATTGGGCTTGTTCAAATGGGCCAGTTTGCATTCAAACTTTCAACATTCCCC AGAATCATATGACATGATGGTAGACATATTGGGTAGAATGAAGGTAATGGACAAGTTGAGAGATCTCTTAGACCAAATGC GTTGTGAGGGGAGTATCATCACTCTCAATACTATAGCCAAGGTAATGAGAAGGTTTGTTGGGGCAGGACAGTGGGCAGAT GCTGTGAGAATATTTGATGACTTGCAAACTCTTGGCTTGGAGAAGAACACAGAATCCATGAACTTGTTGCTTGATACCCT ATGCAAGGAGGAATTTGTTGAGCAAGCTCGTCAAATTTACTTGGAGTTGAAGCAGCACATTGCTCCAAATGCTCACACAT TTAACATATTCATTCATGGTTGGTGCAAAATCCGTCGTGTAGAAGAAGCACATTGGACAATCCAAGAAATGAAAGGATAT GGTTGTCGCCCTTGTGTTATAAGTTATTCCACCATCATCCAATGTTATTGTAATGAACAGAATTTTAGCAAGGTCTATGA GCTTCTTGATGAAATGCAAGCTCAAGATTGCTCCCCAAATGTGGTTACTTATACTATCATCATGTGTGCACTGGCAAAGG CAGAAAAATTTGATGAAGCTTTGCAAGTAATTGAGAGAATGAGGTCTGCTGGATGTAGGCCTGATACACTTTTCTACAAT TCATTCATCTATACATTAGGGAGAGCAGGCAGAATAGATGATGCTAACCATGTGTTTAAGGTTGAAATGCCTAAAGCTGG TGTGGCCCCAAATACATCCACCTATAACTCGATGATTTCTATATTTTGTCATTATGCAGAAGTGAAGAGAGCTTTTGACA TATTGGAGGAGATGGAAGATTCAGGCCTCTGTAAGCCTGATATTCAAACATACCACCCATTGATCAAGTCATGCTTCAAG ATGGGAAAAATAGATAGTTGGTTGAATGAAATATTAAATGACATGGTCAATAAGCATCATCTTGGTCTTGATCTTTCAAC CTATACACTGCTAATTCACGGACTTTGTAGAGCTGATAGATGCAAGTGGGCATTCTCTCTGTTTGAGGAGATGATAGGTC TAGATATAGTGCCTAGATACAGAACTTGCTGTTTGCTATTGGAGGAAGTTAAATTGAAAAATATGTATCAAGCTGTTGAG AAAATTGAGGATCTTATGAAGAAATTATAA
Protein sequence (LotjaGi5g1v0007800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSLYSRKCCCSLFSRLAIASCGARGFRHQEQCQSLMRSVDILTSKVAKGSSEEEIIRSLCNDQACDAIHLSPNLINILL RRYKDDWKSALGLFKWASLHSNFQHSPESYDMMVDILGRMKVMDKLRDLLDQMRCEGSIITLNTIAKVMRRFVGAGQWAD AVRIFDDLQTLGLEKNTESMNLLLDTLCKEEFVEQARQIYLELKQHIAPNAHTFNIFIHGWCKIRRVEEAHWTIQEMKGY GCRPCVISYSTIIQCYCNEQNFSKVYELLDEMQAQDCSPNVVTYTIIMCALAKAEKFDEALQVIERMRSAGCRPDTLFYN SFIYTLGRAGRIDDANHVFKVEMPKAGVAPNTSTYNSMISIFCHYAEVKRAFDILEEMEDSGLCKPDIQTYHPLIKSCFK MGKIDSWLNEILNDMVNKHHLGLDLSTYTLLIHGLCRADRCKWAFSLFEEMIGLDIVPRYRTCCLLLEEVKLKNMYQAVE KIEDLMKKL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 9 | 19 | 11 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 489 | 465 | - | – | |
| PANTHER | 27 | 263 | 237 | 5.2E-79 | – | |
| Gene3D | 52 | 195 | 144 | 3.4E-18 | ||
| ProSiteProfiles | 106 | 140 | 35 | 7.728 | ||
| ProSiteProfiles | 141 | 175 | 35 | 7.476 | ||
| Pfam | 175 | 223 | 49 | 1.0E-8 | ||
| ProSiteProfiles | 176 | 206 | 31 | 7.892 | ||
| Gene3D | 201 | 275 | 75 | 2.9E-17 | ||
| ProSiteProfiles | 210 | 244 | 35 | 11.937 | ||
| TIGRFAM | 212 | 244 | 33 | 4.3E-5 | ||
| PANTHER | 234 | 408 | 175 | 5.2E-79 | – | |
| Pfam | 244 | 293 | 50 | 2.1E-14 | ||
| ProSiteProfiles | 245 | 279 | 35 | 10.775 | ||
| TIGRFAM | 247 | 281 | 35 | 8.4E-10 | ||
| ProSiteProfiles | 280 | 314 | 35 | 13.055 | ||
| TIGRFAM | 282 | 316 | 35 | 9.5E-11 | ||
| Gene3D | 287 | 406 | 120 | 1.7E-32 | ||
| ProSiteProfiles | 315 | 350 | 36 | 10.808 | ||
| TIGRFAM | 319 | 352 | 34 | 3.3E-5 | ||
| Pfam | 350 | 399 | 50 | 3.6E-12 | ||
| ProSiteProfiles | 351 | 385 | 35 | 11.093 | ||
| TIGRFAM | 354 | 387 | 34 | 1.5E-6 | ||
| ProSiteProfiles | 387 | 418 | 32 | 7.64 | ||
| Gene3D | 407 | 489 | 83 | 1.1E-8 | ||
| PANTHER | 410 | 488 | 79 | 5.2E-79 | – | |
| ProSiteProfiles | 424 | 458 | 35 | 11.345 | ||
| Pfam | 424 | 451 | 28 | 2.6E-8 | ||
| TIGRFAM | 427 | 458 | 32 | 1.0E-6 | ||
| Coils | 472 | 489 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0007800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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