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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0015200 |
| Transcript ID | LotjaGi5g1v0015200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G19520.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q940Z1|PPR51_ARATH Pentatricopeptide repeat-containing protein At1g19525; TrEMBL-Plants: tr|A0A151S940|A0A151S940_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi5g1v0015200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3081198..3085378) extracted from Lotus japonicus Gifu genome v1.2.
TTGCACAAAATTTGGATTCTTTTTGGTGGTCAAAATTTGGACTCAATTTGACAAAAAAAGTAATATTGGGCTCAGCCCAG TACTTTAATGGGCCTATGACAAATATTTTGGGCTCATAGTTTTTCATTTCATTTCCTGCATCATCTTCTTCTTCTTCCTC CTTCGTTACATGACTGTAAACAGTGTCAGCCATAAACCTAAAACCCTAACTCCATTGATGCAGTAGATTCAATTTCCCCA AATCTCAGAAACCATGACTTGGAGAACCTTACTCTCTCGCTGCACTTCAATACACACCATCAACAAGCTCAATGCAATCC CCAAATCCCATTTCCACGCTCGCTCCATCTTCAAACCTCTCCTCATTCCGCCACCCACCGCCACCGCCACTCGCCACCTC CATTCTCAACCCACCTCCAACTCGCTTGTCGACCCGGCGGCGATCCTCGCTCAGCGAAACGACGATGAGGACGACGACAA TGGAACCACGAACGAGTTCCTCTCCCGGTTCGCCTGGATGATGCGGAAAAAGGTGAAGGAAGCGTACCCGGAGTCTGATA AAGCCACCATTGACGCCATGCTTCTTGTGATTGTTGACAGGGTTGTGTCGGAGATGGAGAAGGGCGGGTTGGGCGGCGCG GCGGCGTCGTCGGTTCGTCCTTCCGGGGATTTCAGTGAGGATTTGTGGACGACTGTGTGGGAGGTGAGTGGTAAGGTGCT GGAGGATATGAATAAGGAGAGGAAGAAGGAGAAGATGAAGGGCTTTTTGCAGTGTGAGGAGGTGAAGGAGATGTGTAGGT TTGCCGGCGAGGTCGGTATTCGCGGGGATATGCTTAGGGAGCTGAGATTCAAGTGGGCACGTGAGAAGATGGAGGAGCAT GATTTCTATGAGGATTTGGAGAGGATGAGGAAAGAGGGAGATGTTGAAGAGACTGATGAACCTGAACATCATGTGAAAGA GGGAACTGAGGAGAAGGGTGAGGGTGAGGGTAAGGTTGCTGAACTTCCAAAGAGGAGGGGGAAGATGAAGTTTAAGCTTT ATGGGCTTGATCTCTCTGATCCTAAGTGGGAGCAGGTGGCTGAAAAGGTCCATGAGTCAGGACAAGTGCTTTGGCCAGAG GAGCCAAAGGAAATAACTGGGAAATGCAAACTTGTTACTGAGAGAATCATGTCATTGAAGGAGGAGGAGGAGGAGGAGGA TAACTTGACAACCCTGTTGGCTGATTGGGTGGAGCTTCTACAGCCTAAGAGGGTGGATTGGATCAATTTACTTGAACGAT TGAAAGAGCAGAATCGTCCTTTGTATTTCAAGGTAGGCCGGTGGTTTGCTATTATTTAGAGGAAAAGAAAAAAAAATTGA AGATCTTGATATGATTTCGGTTTCTCTAATAAGTTGAAATCACACCCTTCAACTTTTGCAGAAGCTCTCTAATCTAATTT GTCAATAAATGCCTATAAACTTCTAACTGTTTTTCCTTAGTTAGAAAGTAAATACTTTTAGCTATCTCTAATGAAAAGTC CCCCATAGGGTAGAAGTTAATCCAAACCGGGCCTTTAGATAGATCACCTTACTATGTGTGTGTTTGGATACCAGTTGAGT GCACTATGAACAAACTTTTATATTTTTGAATTGTAGTGCCTGCTAACATTGTTTGCACTAGTACCACTAGATATCGAAAC ATACCCCACGTTGCATATTTTCAGTTTTTAACAGTGCTGGGATTTTCCTAGATGAGTTGTGCATATGAATTTGATCTGAT ATTTTAGCAGATTATTATTATTATCATTATTGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTA TTTATTAGGACATGCCAATGTTTGGACCTAAATGCTGAATATCTATTTGGAAATGAAGGTCCGGATGGGGGACATGCATA TGCATTAGGGAAATGGCATAACTCCATCCTGTTAGTCTGCCTTTTGATATTTTGGTTGGAGATGTTTGAATTCCCGATAT CAGCGTGATTGCGGAATGGATCAATTCTTTCTTGCATTAATTTGCAAAACTGGGTATATGTTGTTCCTTGAGATTTATGT ATGATCTGAGGCATCCAGCCTCTTTATTTTTTGTTACCTTTTACTTTCTCTGGATGAGAGCTTAGTTACATATCCATCCT CTTGTCAAAGATAACATGCAAGCTGTTGAGTTGTCTTGTTTTTTCTACATGGTTCTTTGCTTGCATTCTTACACTGTATC TGTATGATATAGTAAGGATATTGTTTAATAGACCCCTAGTCAGTTGACACATGCAAATCATTACCCTGTCACAAAGAAAT ATTTAAGCAGGAATTGTACAAGGTGATGGTGAATTATTCATTTGATCTAGGATCTGATCCTACTTGTGCACGACATTTTA TGGATAGTTTGTTTATGTGCTAATTACTTATTTTAAAACACAGATGATTCTAGGAAGACATTCCAAGAGGCTGGATATGG ATTTAGGATTTAATTTTTGAAGTGAATTGCTGATTCAAATTTTTTGAATGAAGTAAGGCCTCTTTGGATTTAGGATTTAA TTTTTGTCAAACCGTTTGCTTTTACAGGTGGCAGAAATTATACTGACTGAAGATTCGTTCCAAACAAATATATCTGACTA CTATAGGCTTATTGATATCTATGCTAAAGAGAACCGCTTTGATGATACTGAGAGGATCCTTAAGAAGATGAATGAAAACC AAATAGGGCTCGATGCTTCAACAGCCAGTGCATTGGTCCACCTGTACTGCAAGGTAGGCAATCTTGAACGTGCAAAAGAA GCTTTTGAGGTCTTGACTAGAAAGGGCTTTCAACCAGACATTAAAGTCTACAACTCAATGATCATGGGCTATGTAAATGC TGGTGATCCTAAGGCTGGTGAGAGTTTGATGAAGAAGATGGAGGAGAGAGGAGGTATTAAGCCCACAAAGGAAATATATA CGGCATTGCTCCGAGCTTACTCTGAGCGTGGTGATGTTATTGGAGCTGGGCGAATTTCAACAGCTATGCAGTTTGCAGGA TTCCAGCAGAGTATGGAGACATGCACCCTGCTTATTGAGGCACATTCACGAGCAGGTGACCCAGAACAAGCAAGAAACAA CTTTGACTACATGATAAAATTTGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCGGCTTATGAAACGAAAA ATTTATTGGACAAGGCATTAAATCTTCTTCTTGAGTTAGAGAAGGATGGGTTTCAGCCTGGGGTCGCAACTTATTCTGTT CTTGTGGACTGGCTTTCTAAAATGAATCTTGTTGATGAGGTTGAACAGCTTTTAAACAAAATTGCTCTTCTGGGCGAGGC ACCTCCTTTTAGGATTCAAGTGAGTCTCTGTGGTATGTATGCAAGGTGCAAAATGGAGAAAAAGGCCCTTCAAACTCTGG GCGTTCTGGAAGCTAGAAAGGATGAACTAGGACCACAAGAGTTTCAGACAATTATACAAGACCTTATTGAAGGTGGGTTT CAGAAGCATGCACAAAGAATGTGTAAGATCATGGAAGCACAGGGTTTCACTCCATCATATGAGCTTAAGGGGGCCATCCA ACATGGCATTATAATGCCAAGAAGGAGATGGTCATGAGAAGTGCCATGCTACTGTTGTTCTGCAAAGTGATCAACAAATG CACCGCCTTATGAAGGAAGCGCTGGTTTGCTGGATTGACCATCCTTAACCAATAAAGGGTTGAGTTTATGCTTGATGATA CGTTGTTAGTTTCTCAACTGTACCATCCTTATGAATTTTGCCATGATTACATTTTTGCAAGTGTTCAGATTACTGATTTA CTTCTTGGAATAGTTCTTTTGAACTTTATCACTTTGTATAATAGATTAATTAATTTGGATAGGCATTTTTCGTAGTAATA ATATACAATCTCTGTGACTCTAGGCATGTTTGTCACTGATGCATGATTTGTTTGCCTTCAGCTCTTGCATGCCTGGGATA CAGTTGCATGTTGCGACTTCTGATAACTTTTTTTTAACCTATCTGTCAATGGATTGCAGGTATTCTACATGCTTTCATTT GATATTCTTTTATGTCATTTAACAAAACTATAATAAAGACTGATCGGTATGATACATGCTATAAATATGTGTGTTGATAT AAATTGATTTTTATTAAATTT
CDS sequence (LotjaGi5g1v0015200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTGGAGAACCTTACTCTCTCGCTGCACTTCAATACACACCATCAACAAGCTCAATGCAATCCCCAAATCCCATTT CCACGCTCGCTCCATCTTCAAACCTCTCCTCATTCCGCCACCCACCGCCACCGCCACTCGCCACCTCCATTCTCAACCCA CCTCCAACTCGCTTGTCGACCCGGCGGCGATCCTCGCTCAGCGAAACGACGATGAGGACGACGACAATGGAACCACGAAC GAGTTCCTCTCCCGGTTCGCCTGGATGATGCGGAAAAAGGTGAAGGAAGCGTACCCGGAGTCTGATAAAGCCACCATTGA CGCCATGCTTCTTGTGATTGTTGACAGGGTTGTGTCGGAGATGGAGAAGGGCGGGTTGGGCGGCGCGGCGGCGTCGTCGG TTCGTCCTTCCGGGGATTTCAGTGAGGATTTGTGGACGACTGTGTGGGAGGTGAGTGGTAAGGTGCTGGAGGATATGAAT AAGGAGAGGAAGAAGGAGAAGATGAAGGGCTTTTTGCAGTGTGAGGAGGTGAAGGAGATGTGTAGGTTTGCCGGCGAGGT CGGTATTCGCGGGGATATGCTTAGGGAGCTGAGATTCAAGTGGGCACGTGAGAAGATGGAGGAGCATGATTTCTATGAGG ATTTGGAGAGGATGAGGAAAGAGGGAGATGTTGAAGAGACTGATGAACCTGAACATCATGTGAAAGAGGGAACTGAGGAG AAGGGTGAGGGTGAGGGTAAGGTTGCTGAACTTCCAAAGAGGAGGGGGAAGATGAAGTTTAAGCTTTATGGGCTTGATCT CTCTGATCCTAAGTGGGAGCAGGTGGCTGAAAAGGTCCATGAGTCAGGACAAGTGCTTTGGCCAGAGGAGCCAAAGGAAA TAACTGGGAAATGCAAACTTGTTACTGAGAGAATCATGTCATTGAAGGAGGAGGAGGAGGAGGAGGATAACTTGACAACC CTGTTGGCTGATTGGGTGGAGCTTCTACAGCCTAAGAGGGTGGATTGGATCAATTTACTTGAACGATTGAAAGAGCAGAA TCGTCCTTTGTATTTCAAGGTGGCAGAAATTATACTGACTGAAGATTCGTTCCAAACAAATATATCTGACTACTATAGGC TTATTGATATCTATGCTAAAGAGAACCGCTTTGATGATACTGAGAGGATCCTTAAGAAGATGAATGAAAACCAAATAGGG CTCGATGCTTCAACAGCCAGTGCATTGGTCCACCTGTACTGCAAGGTAGGCAATCTTGAACGTGCAAAAGAAGCTTTTGA GGTCTTGACTAGAAAGGGCTTTCAACCAGACATTAAAGTCTACAACTCAATGATCATGGGCTATGTAAATGCTGGTGATC CTAAGGCTGGTGAGAGTTTGATGAAGAAGATGGAGGAGAGAGGAGGTATTAAGCCCACAAAGGAAATATATACGGCATTG CTCCGAGCTTACTCTGAGCGTGGTGATGTTATTGGAGCTGGGCGAATTTCAACAGCTATGCAGTTTGCAGGATTCCAGCA GAGTATGGAGACATGCACCCTGCTTATTGAGGCACATTCACGAGCAGGTGACCCAGAACAAGCAAGAAACAACTTTGACT ACATGATAAAATTTGGGCATAAGCCTGATGATAGGTGCACTGCTAGCATGATTGCGGCTTATGAAACGAAAAATTTATTG GACAAGGCATTAAATCTTCTTCTTGAGTTAGAGAAGGATGGGTTTCAGCCTGGGGTCGCAACTTATTCTGTTCTTGTGGA CTGGCTTTCTAAAATGAATCTTGTTGATGAGGTTGAACAGCTTTTAAACAAAATTGCTCTTCTGGGCGAGGCACCTCCTT TTAGGATTCAAGTGAGTCTCTGTGGTATGTATGCAAGGTGCAAAATGGAGAAAAAGGCCCTTCAAACTCTGGGCGTTCTG GAAGCTAGAAAGGATGAACTAGGACCACAAGAGTTTCAGACAATTATACAAGACCTTATTGAAGGTGGGTTTCAGAAGCA TGCACAAAGAATGTGTAAGATCATGGAAGCACAGGGTTTCACTCCATCATATGAGCTTAAGGGGGCCATCCAACATGGCA TTATAATGCCAAGAAGGAGATGGTCATGA
Protein sequence (LotjaGi5g1v0015200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTWRTLLSRCTSIHTINKLNAIPKSHFHARSIFKPLLIPPPTATATRHLHSQPTSNSLVDPAAILAQRNDDEDDDNGTTN EFLSRFAWMMRKKVKEAYPESDKATIDAMLLVIVDRVVSEMEKGGLGGAAASSVRPSGDFSEDLWTTVWEVSGKVLEDMN KERKKEKMKGFLQCEEVKEMCRFAGEVGIRGDMLRELRFKWAREKMEEHDFYEDLERMRKEGDVEETDEPEHHVKEGTEE KGEGEGKVAELPKRRGKMKFKLYGLDLSDPKWEQVAEKVHESGQVLWPEEPKEITGKCKLVTERIMSLKEEEEEEDNLTT LLADWVELLQPKRVDWINLLERLKEQNRPLYFKVAEIILTEDSFQTNISDYYRLIDIYAKENRFDDTERILKKMNENQIG LDASTASALVHLYCKVGNLERAKEAFEVLTRKGFQPDIKVYNSMIMGYVNAGDPKAGESLMKKMEERGGIKPTKEIYTAL LRAYSERGDVIGAGRISTAMQFAGFQQSMETCTLLIEAHSRAGDPEQARNNFDYMIKFGHKPDDRCTASMIAAYETKNLL DKALNLLLELEKDGFQPGVATYSVLVDWLSKMNLVDEVEQLLNKIALLGEAPPFRIQVSLCGMYARCKMEKKALQTLGVL EARKDELGPQEFQTIIQDLIEGGFQKHAQRMCKIMEAQGFTPSYELKGAIQHGIIMPRRRWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 692 | 692 | 0.0 | – | |
| PANTHER | 1 | 692 | 692 | 0.0 | – | |
| MobiDBLite | 220 | 248 | 29 | - | – | |
| Gene3D | 301 | 453 | 153 | 1.3E-22 | ||
| Coils | 308 | 328 | 21 | - | – | |
| ProSiteProfiles | 367 | 401 | 35 | 8.44 | ||
| Pfam | 374 | 398 | 25 | 0.28 | ||
| ProSiteProfiles | 402 | 436 | 35 | 11.17 | ||
| TIGRFAM | 406 | 438 | 33 | 2.6E-4 | ||
| Pfam | 429 | 486 | 58 | 3.9E-8 | ||
| ProSiteProfiles | 437 | 471 | 35 | 10.26 | ||
| TIGRFAM | 440 | 473 | 34 | 1.4E-6 | ||
| Gene3D | 469 | 696 | 228 | 3.3E-27 | ||
| ProSiteProfiles | 473 | 507 | 35 | 7.081 | ||
| ProSiteProfiles | 508 | 542 | 35 | 10.271 | ||
| TIGRFAM | 511 | 543 | 33 | 1.4E-4 | ||
| Pfam | 511 | 539 | 29 | 0.16 | ||
| ProSiteProfiles | 543 | 577 | 35 | 8.396 | ||
| Pfam | 549 | 575 | 27 | 0.42 | ||
| ProSiteProfiles | 578 | 612 | 35 | 8.068 | ||
| Pfam | 581 | 605 | 25 | 0.19 | ||
| ProSiteProfiles | 648 | 682 | 35 | 6.489 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0015200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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