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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0017400 |
| Transcript ID | LotjaGi5g1v0017400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 26S proteasome non-ATPase regulatory subunit; TAIR: AT4G24820.1 26S proteasome regulatory subunit Rpn7; Swiss-Prot: sp|Q93Y35|PSMD6_ARATH 26S proteasome non-ATPase regulatory subunit 6 homolog; TrEMBL-Plants: tr|V7CBH3|V7CBH3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0017400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3460599..3465306) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCGGGTTATGAGTGTAGTTGAGATCCATTACTACAATTTCCAGCGCACCATCAAACACAAAAGTGACTTTACCTATA ACTATTTAACTTGCATACGAAAAAAAAAACTATAACTACTTTACTTTCTTTTAAATCAATTTTTTCTTAAATAAATAAAT CTGCTCAATTATTTATTATTTATTATTTATAAAATATATAAATCAAATAGCATGTTCTACAAGTAAGCCTCTTTTCCATC TACAAGTAGTTCATCAGTGACATTGTGCATCTGTTAAAACTTGAGCCTCTCCATATCTGCATTTGCATCATCGAAGAAGA GAAGAAGATGGAAGGAGAAGAAGGTTCTCAACAGGCACAGCTTGTGCTCGCCGACAAGCTCTTCCTTCTGAAACAACCCG ATGTTCAAGACATCGACAAGGTTCGCTACAAAGAGGACGTTTTCAACTATGTCAAGGATAACGGTAAGGACAAGAGGGTT CTCAGCTTGCTCATCTTCCTTCCATCACTATCAAAACCCTAACTCTCGTTTTTTTGTACAGATATGCTCCCTCTTTACGA AACCCTAGTTGCTGATTCCGTATTGGACATGGATCCTACCCTTTTGGATTCAATGCGAGCTAAAATTGACGATGAGCTCA AAAAGATCGACGAAAAGTGAGTCTGTCTTTACGATTTATTATAATTGCCCAATTTTAATTGAGAATTTCAGATTTCAAAT GCAGTAGTAGGTTAAATACAGAATGAGAGTGATAATTTGGTATTGTTGAGGGCTTTTTGTTCTTAGCATTATTGATGCTT ATCAAGGATGGAAGACTGGTATAGAATGACAAATTATCTGTTATTGTTATTGATCTTGTGTGAAATTAAAAGCTACATTT ATAGGAGATTCAGAGAAGTTACAACTTACTAGTGCTTATAGGTTAACTGTTACAATTCTAACTAACAACTAGTCTTCAGT AACTTAGACTCTCTGAACTACCCGGTGCCCACCATTAACCGAAAATATATTGGCATGCTAACTTATATACAGTAATATAG TCTAATACTTCCCCCTCAAGATGGTAGATAAATATTGAGGATCCGCATCTTGAACATAAGAGATTTGAATATAGGTGTTG TGACTGCGTTTGTGAACAAGTCTGCTAATTGATGCTCGGACTTGACGGGGACTAGCTGGATAATGCCATTATTTATCTTA TCACTCACAAGATGGCAATCTATTTCAGTGTGCTTTGCTCTTTCATAATACTAGAGTAGGGGTCCGGCTCCTCTAAAGTG AGTAAGTATGTCTACTCACTTTATGGGGTAAAGTAAGTCATTACTCCATTGATTGAGTTGTTTTTATTGACTTTTTTCAA ACTAGGTAATCGCTATTAATGGTGTTACGACTTACTTTACTCTCACTTTAGAGGAGCCAAATCCCCAGAGTAGGACCTGA ATCAATGCCAAAGTCCTTGAGCAAAGTAGATAACCATGTGACCTGACTAGTAACATTTGCAACGATGTTGCGTTGTGACT GTAATTTTTAGAGTTCATTCTGCATTTTTTTTATGTGTTACTTACACAAATATAAAGCTGAATGACTATTGTAACCCATC AAATCCCAAACCTGTTGGCTGAGAGAAAAATGAGATGAATTATACCAAAATCCATCATTTTCACTCCAGCAGAGCTGACA CTGTAGCACTACAATCAGTGTCCACCACACTTGAGGAAGATATCATGTTGCCATCGAACTGAAGATGTCTCATGATGATG AACCTCGTTGCTGCTTCCCCATGTGGCTGAGGGCCACATGTACAAAACTGATTGTATCTCCTGGAAACTAGAAGTTTCAG GGCATGACCGCCTCTGATTGTATGACTTGTGATAAATGATGCATGTGTTTTTTATGACGGTCTGCTTTTCTTTTTTATCT AGATCTAGATACTAATATGATATTTTAGAACAGTGAAAAGAAGGAAATTACAGCTATGAGAATACGAGATATATCCTCTA CGACCTAGAAAACTTGATACTCGGAAACAAAAAATGCTGAGACTGGGCGAGATGACAGTCATAGCATTTCCCATTTTGCA ATTCTTCGAGATGCAAATAATTATTTGAGAAGTGGCACGTTTGATAATCCTTGAACTTATGATATTACATGTTGCCTTAT TTTAGGATTGCTGATGCTGAGGAAAACCTCGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCATTGTTTTTCAT CCGGATTGGGGACAAGGTATGTATAGCTTTTATAACTTTGTTTATTTCCTGTCAGCTGCAGGGATCAGTTTTTGATAATT CTCTTATTTACCAGGAAAAAGCTTTGGAACATCTTAAGTTAACTGAAACCAAGACAGTTGCTGTTGGACAGAAGATGGAC CTGGTGTTTCATACATTACAGCTTGGTTTCTTTGATATGGATTTTGATCTCATTTCGAAAAGCATTGACAAAGCCAAAAG GTAATTATTTTAGTTATAAATGTGTGTAGTTATACCATCTGCTCTGCTTTTTGGATGAGAATTGGTTTTCTAACTGTTTG CACTGTGATGGCAGCTTGTTTGAAGAAGGTGGTGATTGGGAAAGGAAGAATCGACTGAAAGTGTATGAAGGCCTGTACTT CATGTCCACACGAAACTTTAAGGAGGCTGCCAAATTATTTTTGGATTCTATATCAACATTTACGACCTATGAACTCTTTC CCTATGACACCTTTATTTTCTACACAGTGTTGACTAGCATTATATCATTGGACAGAGTTTCCTTAAAGCAGAAGGTATGT TGATTCTTTCATGAAGCCTTGTACATTTATGTTTTTTTCTGCACTGTTGTTTAATTTATTGTTTCTTGGCAAGTTGCCTG CTTATGCCTAATTACTAACTTCAGCTAATTTGCATCAGGTAGTAGATGCTCCTGAGATCTTGACAGTGATTGGCAAAATC CCACATCTTCCAGAGTTTTTGAACTCCTTATATGATTGTCAATACAAGTCTTTTTTCTCAGCATTTGGTGAGTAGACATC TGCAGAATCTCAGTTATCTTTTAGTGATTTTTGAATGTTCCGCTCTCCACATGAAACACTTTATGCTTTGTGTTATAATT TGAGAATCTGTGGAAATCATGTATTGTATAGCAGGGGCTACTAAGTGCTGGCAAACAATTCATTCCTATCTTTTTGGTCC CATGTTCTTAGTTTCATTTTATTTTGTGATTTTTTTCAGCTGGCCTGACGCAGCAAATTAAGTTGGACCGCTACCTGCAT CCGCACTTCCGATATTACATGAGGGAGATCAGAACTGTTGTTTATTCCCAGTTTTTGGAATCTTATAAGAGTGTGACAAT TGAAGCAATGGCAAAAGCCTTTGGAGTTACAGTGGATTTCATTGATGTGTAAGTGAATGCATCTCATTAGCTCAATTTCA GCTTTAGCACCTTATTAGTTTTAAAATGCCGTGGGAGGCAACTCATTACATGTATTCTTTCCAGGGAGCTATCGCGTTTT ATTGCAGCAGGGAAGCTTCATTGTAAGATTGACAAATTTGCAGGCGTTCTCGAAACTAATCGCCCGGATGCTAAGAATGC TCTTTACCAAACAACTATTAAGCAAGGGGACTTCTTATTGAACCGGATCCAGAAATTGTCACGTGTGATTGATCTCTAGG TGTCTTTCGATTTTTAGATTGAAAGTTTTCATTGGAAAGGTTGAGGTATTGACAATTCAAAGACATCCTGTGGGCATGAA GCATGACATTTCTATAGTCTATTTGATTAGATTTCCAAATTAATGAACAATCCAGCGTACTGAATCCAATTCAATCAGTT TTTAATTATCTTTGCGACAGTTAAGTTGTTTTTATGATGCTATTCCAGTGTTTGAACCTTCTTAACAGCTTATTTTGTTT TGGAAAATGCTGATTTATATGGATGCTATGCAATGCAAACGAATGGAAATGAACACCAAGCTAATTTTAATTGGTGGAAG TTAAAATTATTGTGTTTCTTCCAAGGTTTCTTTCGTAACTAGCAATACTCTTTTCTTTTTCGGTTGCGCTTGAAAGCATA TAGAGTTCTTTGGTCCTAAAATTACTCGAGTTAAATGAATGACATAGGTTGGAATGACCAGATTGCCCAATAATATGGCA CGACGCCATAACAGTTTCAAACTAGAGTGGGTATAACATGTCGGTTTTCGTAGCATTTTAATTTTAGGAAAATGCTAAAA GTGCACGACGTGAGATAGGCACGACAAGCATGTACGTGAGATAGCCTGTCGTGAGAGGCACGACAAGCATGACGTGATTT TTTTTTTTCAAATACCATCACTTTCCTTTCATCCATTATCGCTTCACTCCTCTCTCTACTTTATTTTTCATGGTTCATCA CTGGAGACCCCTTAAAATTTACTCTTCCTGGGTTCAATTCAGGATTCACGACGACAAGTGGTGGCTAAAGCAGAGGTTTT GCAGTGATGGGCCTGTCGAGATCAAAGACAAAGTCAACGTTATCTTTATCTTTTGTAATTAGAAATAGTATATTTTTTTT AAGGTAAGAAATAGCATATTTATCTCCTATGATTTTGGGATACTTCATTGTATATATTTCAGCTGTATTTTCTATTTAGA GACAACATTTTGTACATTTTTTTATAAGCAATATATTTTATATACAATTAGCTCATAATCTTTAGGCA
CDS sequence (LotjaGi5g1v0017400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGGAGAAGAAGGTTCTCAACAGGCACAGCTTGTGCTCGCCGACAAGCTCTTCCTTCTGAAACAACCCGATGTTCA AGACATCGACAAGGTTCGCTACAAAGAGGACGTTTTCAACTATGTCAAGGATAACGATATGCTCCCTCTTTACGAAACCC TAGTTGCTGATTCCGTATTGGACATGGATCCTACCCTTTTGGATTCAATGCGAGCTAAAATTGACGATGAGCTCAAAAAG ATCGACGAAAAGATTGCTGATGCTGAGGAAAACCTCGGTGAGAGTGAAGTTCGTGAGGCTCACTTGGCAAAATCATTGTT TTTCATCCGGATTGGGGACAAGGAAAAAGCTTTGGAACATCTTAAGTTAACTGAAACCAAGACAGTTGCTGTTGGACAGA AGATGGACCTGGTGTTTCATACATTACAGCTTGGTTTCTTTGATATGGATTTTGATCTCATTTCGAAAAGCATTGACAAA GCCAAAAGCTTGTTTGAAGAAGGTGGTGATTGGGAAAGGAAGAATCGACTGAAAGTGTATGAAGGCCTGTACTTCATGTC CACACGAAACTTTAAGGAGGCTGCCAAATTATTTTTGGATTCTATATCAACATTTACGACCTATGAACTCTTTCCCTATG ACACCTTTATTTTCTACACAGTGTTGACTAGCATTATATCATTGGACAGAGTTTCCTTAAAGCAGAAGGTAGTAGATGCT CCTGAGATCTTGACAGTGATTGGCAAAATCCCACATCTTCCAGAGTTTTTGAACTCCTTATATGATTGTCAATACAAGTC TTTTTTCTCAGCATTTGCTGGCCTGACGCAGCAAATTAAGTTGGACCGCTACCTGCATCCGCACTTCCGATATTACATGA GGGAGATCAGAACTGTTGTTTATTCCCAGTTTTTGGAATCTTATAAGAGTGTGACAATTGAAGCAATGGCAAAAGCCTTT GGAGTTACAGTGGATTTCATTGATGTGGAGCTATCGCGTTTTATTGCAGCAGGGAAGCTTCATTGTAAGATTGACAAATT TGCAGGCGTTCTCGAAACTAATCGCCCGGATGCTAAGAATGCTCTTTACCAAACAACTATTAAGCAAGGGGACTTCTTAT TGAACCGGATCCAGAAATTGTCACGTGTGATTGATCTCTAG
Protein sequence (LotjaGi5g1v0017400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEGEEGSQQAQLVLADKLFLLKQPDVQDIDKVRYKEDVFNYVKDNDMLPLYETLVADSVLDMDPTLLDSMRAKIDDELKK IDEKIADAEENLGESEVREAHLAKSLFFIRIGDKEKALEHLKLTETKTVAVGQKMDLVFHTLQLGFFDMDFDLISKSIDK AKSLFEEGGDWERKNRLKVYEGLYFMSTRNFKEAAKLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDA PEILTVIGKIPHLPEFLNSLYDCQYKSFFSAFAGLTQQIKLDRYLHPHFRYYMREIRTVVYSQFLESYKSVTIEAMAKAF GVTVDFIDVELSRFIAAGKLHCKIDKFAGVLETNRPDAKNALYQTTIKQGDFLLNRIQKLSRVIDL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 386 | 384 | 5.9E-223 | – | |
| PANTHER | 3 | 386 | 384 | 5.9E-223 | – | |
| Gene3D | 25 | 306 | 282 | 8.7E-41 | – | |
| Pfam | 63 | 236 | 174 | 2.8E-58 | ||
| Coils | 71 | 98 | 28 | - | – | |
| ProSiteProfiles | 190 | 358 | 169 | 23.6 | ||
| Pfam | 253 | 353 | 101 | 2.4E-14 | ||
| SUPERFAMILY | 282 | 363 | 82 | 9.52E-17 | ||
| SMART | 287 | 370 | 84 | 4.4E-22 | – | |
| SMART | 287 | 370 | 84 | 4.4E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0017400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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