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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0022000 |
| Transcript ID | LotjaGi5g1v0022000.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT1G12775.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial; TrEMBL-Plants: tr|A0A1J7GLU8|A0A1J7GLU8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0022000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:3967354..3973376) extracted from Lotus japonicus Gifu genome v1.2.
CACCAGACCTCATCAACGCGCACCACCACGCCGGCCGCCGCTCCACCACGCCGGTCGCCGCTCCACCACCGATCAGTCCA GCCGTCCCTCTCTCTGGCTCTGCGGTTCTATAGACTACAGGTATTACTGATTTCCTTTCTCTTTCTCTTGTCCTAACCCT AAATGGCAAAATTGATTTCCTTTCTCAAGCTTGATTTGATTTCCCTAAATTGATTTCCTCAAATCATTCAAATTATGCAA ACTCTCAGCTTGGTTTTGTCTCAAACTCTCTCTCTCTGATGTGCTGTCTGTCAATTAGATGATTGCAGATTTGCAGGGTG GGAATATATGTGTTAGTGATGGGTTGCTAGAAAATGCTCTCTGCATTCTTGTTTTGGTTTCTCTATTTTAGTGGGGCTGT CATGAGTTGAGGGGGATGAAAATCTGATTGAGTTAGTTTAGCTTTAGTTTTTTTTTAAGACCAAAATGCATCAGTTCAGC CTATAGCCATAACCAAAGGTCCAGGACCAGCTTTTACATGTTTCAAGTGAATTGATAAATGTGATGCAAGTTGAATGCAA TAGAAGACCATTCTTATTCATTAAATTCCATCATATGTACGCAGATCAGTTTTCTCACTGAGTTGGGTGCTTAGATTCTT TTCTCCCAATTACCCCCTGAACTAGTAGTTCTTTGTTTTATGAGTGAGTCTTCTTTTTCACATGTTATATGTAACAAGGC ATGCAATCCCCAAACTTCCTCGCATTCTTATGCCGTCCTCTTCCTTCCTTCCATATGCTCAACAGACCAGGCACCGTCTT CATTCAAACTCCTCATTGCCACCGCAAATTTCATACTATTGATGATGCTGTGGCTTTGTTTCGTCGCATGCTCCATATGC ATCCCCCACCATCGGTTGTGGAATTCACCAAAATCCTAGGAGCAATTGTAAATATGAAAGACTATGCCATACCTATCTAT CTTTATACTCAAATGGAATCTAGGGGCATCCTGCCATATACAGTTACTTTAAACATCTTGATGAATTGTTACTGCCATCT GGGTCAGCTGGGTTTTGCTTTCTCTGTACTGGCTAAGATTCTTAAGTTGGGTTACCAACCAAGTGTTGTATCTTTGACTA CACTAATCAAGGGCTTGTGCATTACTGGTAAGGTGTTGGATGCATGTACAATTCATGACAATATAGTCGCAAAAGGGTTC CGCTCAGATCAAGTTATGTATGGAACCTTAATGAGTGGTCTGTGTAAGAGTAAAGGATCAGGAAATGCCATTCAAACACT TCAAGAATTGGAGGCCTTACAATTGGTTAAGCCGAATCTTGTAATCTACAATACAGTCATTCATGGTTTGTGCAAAGATG GACTTGTAAACAAGGCACAGAAATTGTGTTCTGAAATGATTCAACGCGGAATTTTCCCTGATGTTGTCACTTTTAGTTCG TTAATTTATGGCTTCTGTCATGCAGATCAGTGGAAAGAGGTCAGGTTATTGCTAAATGAGAATAGTCTAGATGTTTGTTC CTTCAACATAATAATGGATGCATTATGCAAACAAGGGCTGCTCTTAGAAGCCCATGCTGTTTGTTATGAGATGATTAAAA GAGGTGTTCAGCCTGATGTTATTTCTTATACTATTTTAATGGATGGCTATTGTTTAAAATGTAAAGTGGACAAGGCAAGA AAATTATTTGATATGATGATTGAAGCGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCCTCATTCAAGGCTACTGCAA GATTGAAAGAGTCGATGAAGCTATGAATCTATGTGAAGATATGCTCACTAAGAATTTAGTTCCAAACGCTGTCACCTACA AATATCTGTTTGATGGCTTGTGCAGATTTGGGAGACTCCCTGATGCATGGAACTTTCTTACTCGAATGCATTATCGTGGC CATCGACCCCCTGATCTTACCCCTTACAATATCATATTAGAAACTTTATGCGAACAGCATCTGGATAAGGCAAACAAAAT TTTTAATTCCCTCATCCCTGAACCTAATGTTCAGAGTTACAACATCTTGATTAGTGGTTATTGCAAGAATGGAAGAGTAG ATGAAGCTATGAGTATTTATCAAAATATGTGTTTGAGGAATATAGTTCGAGATAGTGAGACCTTCAAGTTGTTGATAAAT GCTTTCTGCAAACGGAAGCAATGTGACAAGGCAATTGCATTATATAAAAATAATCGTGACTTGTGCCCATTCAAAATACT TATGGATGGCTTGCGCAAAAATGGAATGGAGGAGGTAGCACAGAGGGTTTCCCAGCTTTATGGAGCCTGTGATCCAGATG TGGCATTAGTTCGGAATCAATTAGCTCTCTAAAGATGATTTGGCAGAATCCAGAATGACCTTGCGTTGCTCTGTGAAGAT AATTTCACCATTTTCTCGTCCTCCCTGTTTTCTCCCACCACGTCCCTCCATCCAATTTGAAGTTCAGGTGATATTTATTG CTCACTTGAAGCTTAAAGTATATACAGCTGTTATTATAAATTTCACTTGCCTTCTATTACAATTGCTATTTGCTATCAAG TTTTCTTAGACTTGAATTTAACTTCACGCCCATGTTTCACCTTGGTAGTTGCTATTTCACTTTTCCTACATCATTTGTAT TTTATATGTATGTATATTCTGGTAAAATAAAGAAGTTAAAAGGAGCAGCAATATTTCAACTTCACATCTAATGGCAGGAG GTAAATAATACCGTGGGGCCAACAGCTCAAAGAGGAGTTGCTCTGTTATTTTCTGCTCCTGCGCTTGCATTTTCAAGGTG GTGTCAAAGGAAACCACAAGAACTTCCCCTGATTTGCTGGTGAGCCTTGTCAAATTTTTACTTTGTTTGAACTCGGTATT TAGATGGAATTTGATTTTCTTACATCTATTTCCAGGTGATAAGGGTCTTAAGAGGTTCAACCTGATGTTATTTCACTATT TTAATGAATGGATATTGTTTAAAAAGTAAAGTGGATGAGGCAAGAAAATTATTTGATAAGGGAAACTGGAATGCCAAAGG CTGCACAGTTGCTGGGTCATCTCCATTTTTTCCTCCTCCCCCTTTTTTCCCTCATCGCTTCCCTCCATCTAATCTGAACT CCAGGTAATATTTATGAGAAATAATTTTTAGTACGGAAAAAAAATGTTAATAATTATGTAAACCTTTGTTTTTTTTCCTT TCAAAATTTGCAACTTTTAATCAATTTAGCTTTCCATTTTTTTGTCTGTCTAATGCAATTCTTGTGATTCTTCTAAAATC CCTTCGTCATATATAGCACTCCTCAATATTTATTGGTCACTTGAAGCTTAAAGTTTATACGACAATTTCTTAAAAGCTTC ACTTGCCTTCTACTACAATTCCTATTTGTTGTCAACGTTATTTTCTAGTCTGGACTATGGATTTTAACTGAAAGCACATG TTGAGCTTTTTTGTTGAATAATGGATGTGGCTTATATTGGCTACCATATTCCATGTTTTTCTTTTTCTAATTTCTTTTAT TAAGTGGCTTTCATTTAGTTGTCAGGATCTGAATATGGTGCTTTCACTCAACATTTTAGGTGTACAGTCCTCTGCTAGAA AGTTGTTGATTTTCTTGCTGAGTTTTGAAGGCTAAATTCTTTATTGACCCATTTGGAATACGAAAGTAAAGTCATGGATC AGTTATATCATTGGTTCAGGATCTGCTTTTCCTACGTGGTGTACATTATTTTATATGTATACAATTTAATATCTAATGGT AGGAGGTAAATAATACAACTGCGCCAACTACTCAAAGAGGAGCTTCTCTATTACTTGCTTCGCATGCACTTGCATTTTCA AGGTGGCGTCGTCAAAGGAAACCACAGGAATTTTCCTCTGATGTGCTGGTGAGCCTCGCCAAATAGCTACATCGTTTGAA CTTGGTAATTAGTTGGGTTTTGATTTCCTGACATCTATTTCCAGGTGATAAGGATCCTGAAGTAACATCCTGGTGAAGCT TAAGAGGTTCTTGCCATGAGAACTGCAAGTTTCAACAGATACCTTAAGCAATAAGAATATTCTTGGAAAGGGAGGGTACA AAAGGTGCTTTGCAGAAGGTTCATTGGTACTATAATGGAAATGTTGCCCCATGCTCAAGAGGTAGATCTTTTGCAATTTT CTCCCTTTTGTCGTAGGGAAGACCCATAGCCCTGTAAACAACATAACAATCATGTTTATAGCACCTAGTCTGATTCTTTG CTGTGGAATGACATTAATTTGGGTTTTTAAGGAGATGCATACCAGTTTATGTGTAGGTTAGGAAACTCGTTCGAAAATCA TGGTGGATATAAGCAACTTCCCTTAGGTTTTGCTCTTGTCCACGATAATTTTGTCCACCGCGAGTTTTCAAACATGCACA TATCTCACTTTTTTGGCTTCTCACTTTTTCTCCTTATTTTGCACCCGTTGTTGCTCCACTCAGTTGTTTATAGCCCACTA ATATCAGTGTTTCATTATTAGGGGTGTGCAAAACCCACTTATGAACGACAACCAAATCTTGAACCGAGCCAAATCAAACC ATAACATAACCAAACTGGTAAAACATTTTTATACCTGAATATATTTTTGTTAAAATTTAGTTCAGTAATTCAAACTGCAT ATAACCAATTCAGTGAACTGCGTTATGCGTATACCCAAATTTCAAAACACAGAATCAAAATTTATATATAGGAGCCCCAA ATCAGTACATTTCTTCCCGAAAGAAGTCATTGGAAGATATGATACACTTTTATCTTAGATGTCAGGAAATTATATGATTC TACCAAAATGTCATCTTGTGTCACAACTCACAACCATTTAAATTTGGCATGACTATGGCTATAGCTTTTGAAAATTTATA GTAGTGTCTTCCAGAAACATGTAGTGAATGAGCTTCAAATTTATAGATATTTCCTTCATTGTAACTTTCTATTTTACTTT TAATGAGATAAAAAGGCTGTCGTGGATAAATATCTATTGCAACAAATCAACCATTTTAAATCTTGCTGCCACTGGTTTTA AGATCCTCTGAGGTGCATGGTGCCATTTAAAAAGCAAAATGCAGCATTGATAACCATCGATTTAAAATGCAGGGTCTGTA GGATTGTGTTGGGGATCGTTTCAGTGCAGCATTGCTTGCGGTTTAGAGGCTTGGATACGGAAGGTTTGTGTCCTCTCTGT GATTGTGAAGCTGAAACTATTGATCATGCTTTTTTGTCATGCAATCATGTTCAGATGCTTTTGATTGGATCTCTACTTGG CTTACGGTACATGTCTTATTCTGCCACCTCTTTTATGCTTACTTACTGCATTTCATGGCAGATGCGGATGATGATGTTGC TTTATTCTTCAGTTTACTATATTGCATCTAGGAGCATTGAAACAATGTCATTTTTAAGGAGTTGCAGCTTGATGAGTCGC CGTCTCTTCAACGATCTTCACGCTGCATGCTCTTCCTGATTTATGTTTTGTTTCGTCCATGGCTGCCCCTTTGACGGTTA CATGGCAGCAAACCAGCAACCTTCGGGTGGGAAAATCAAAATTAATTTGATGTGTCAGTTGTTGAGCATTTGGATGTGGG GTTTGGTCTCCTTGCTGGTGATCATGAGGGTGAGGTTCTCGCTGCAACTAGCGCTTTCCCCCTCTCGGTGTTGCCTCCTT TGATAGCGGAGGCGTTTTGTTGGGCTCTTTCTTCAGATATGACTTCATGTTTTGGATCATTTTGCTTTGAGATAGGCTAT TTACAGCTCTATGAGACTTGGATGAAGACTTAGCCCGGGTCTTCGTATGTTTGCACTTTAGTGAATGATTGTCGTTTACT TGCTTGTTATTTTGATTTTATTGAACCCTCTTTTGTTTGTACAAGCAGCAATAGTTCTGAGGTTTTTTTTTTTGTGTGGC TGATAAGACATTTGCTTTTCAGAACTTGGTTTGGATCGAGGAGGTCCGCCTTCATCCTCTTACTAGGCATGATGTATTAG CCTCTAAACGTGTTTCTCCGATT
CDS sequence (LotjaGi5g1v0022000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAATCCCCAAACTTCCTCGCATTCTTATGCCGTCCTCTTCCTTCCTTCCATATGCTCAACAGACCAGGCACCGTCTT CATTCAAACTCCTCATTGCCACCGCAAATTTCATACTATTGATGATGCTGTGGCTTTGTTTCGTCGCATGCTCCATATGC ATCCCCCACCATCGGTTGTGGAATTCACCAAAATCCTAGGAGCAATTGTAAATATGAAAGACTATGCCATACCTATCTAT CTTTATACTCAAATGGAATCTAGGGGCATCCTGCCATATACAGTTACTTTAAACATCTTGATGAATTGTTACTGCCATCT GGGTCAGCTGGGTTTTGCTTTCTCTGTACTGGCTAAGATTCTTAAGTTGGGTTACCAACCAAGTGTTGTATCTTTGACTA CACTAATCAAGGGCTTGTGCATTACTGGTAAGGTGTTGGATGCATGTACAATTCATGACAATATAGTCGCAAAAGGGTTC CGCTCAGATCAAGTTATGTATGGAACCTTAATGAGTGGTCTGTGTAAGAGTAAAGGATCAGGAAATGCCATTCAAACACT TCAAGAATTGGAGGCCTTACAATTGGTTAAGCCGAATCTTGTAATCTACAATACAGTCATTCATGGTTTGTGCAAAGATG GACTTGTAAACAAGGCACAGAAATTGTGTTCTGAAATGATTCAACGCGGAATTTTCCCTGATGTTGTCACTTTTAGTTCG TTAATTTATGGCTTCTGTCATGCAGATCAGTGGAAAGAGGTCAGGTTATTGCTAAATGAGAATAGTCTAGATGTTTGTTC CTTCAACATAATAATGGATGCATTATGCAAACAAGGGCTGCTCTTAGAAGCCCATGCTGTTTGTTATGAGATGATTAAAA GAGGTGTTCAGCCTGATGTTATTTCTTATACTATTTTAATGGATGGCTATTGTTTAAAATGTAAAGTGGACAAGGCAAGA AAATTATTTGATATGATGATTGAAGCGGGTTTGGTGCCTGATGTTTGGAGTTATAACATCCTCATTCAAGGCTACTGCAA GATTGAAAGAGTCGATGAAGCTATGAATCTATGTGAAGATATGCTCACTAAGAATTTAGTTCCAAACGCTGTCACCTACA AATATCTGTTTGATGGCTTGTGCAGATTTGGGAGACTCCCTGATGCATGGAACTTTCTTACTCGAATGCATTATCGTGGC CATCGACCCCCTGATCTTACCCCTTACAATATCATATTAGAAACTTTATGCGAACAGCATCTGGATAAGGCAAACAAAAT TTTTAATTCCCTCATCCCTGAACCTAATGTTCAGAGTTACAACATCTTGATTAGTGGTTATTGCAAGAATGGAAGAGTAG ATGAAGCTATGAGTATTTATCAAAATATGTGTTTGAGGAATATAGTTCGAGATAGTGAGACCTTCAAGTTGTTGATAAAT GCTTTCTGCAAACGGAAGCAATGTGACAAGGCAATTGCATTATATAAAAATAATCGTGACTTGTGCCCATTCAAAATACT TATGGATGGCTTGCGCAAAAATGGAATGGAGGAGGTAGCACAGAGGGTTTCCCAGCTTTATGGAGCCTGTGATCCAGATG TGGCATTAGTTCGGAATCAATTAGCTCTCTAA
Protein sequence (LotjaGi5g1v0022000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQSPNFLAFLCRPLPSFHMLNRPGTVFIQTPHCHRKFHTIDDAVALFRRMLHMHPPPSVVEFTKILGAIVNMKDYAIPIY LYTQMESRGILPYTVTLNILMNCYCHLGQLGFAFSVLAKILKLGYQPSVVSLTTLIKGLCITGKVLDACTIHDNIVAKGF RSDQVMYGTLMSGLCKSKGSGNAIQTLQELEALQLVKPNLVIYNTVIHGLCKDGLVNKAQKLCSEMIQRGIFPDVVTFSS LIYGFCHADQWKEVRLLLNENSLDVCSFNIIMDALCKQGLLLEAHAVCYEMIKRGVQPDVISYTILMDGYCLKCKVDKAR KLFDMMIEAGLVPDVWSYNILIQGYCKIERVDEAMNLCEDMLTKNLVPNAVTYKYLFDGLCRFGRLPDAWNFLTRMHYRG HRPPDLTPYNIILETLCEQHLDKANKIFNSLIPEPNVQSYNILISGYCKNGRVDEAMSIYQNMCLRNIVRDSETFKLLIN AFCKRKQCDKAIALYKNNRDLCPFKILMDGLRKNGMEEVAQRVSQLYGACDPDVALVRNQLAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 21 | 374 | 354 | 5.31E-5 | ||
| Gene3D | 25 | 146 | 122 | 9.1E-20 | ||
| PANTHER | 40 | 253 | 214 | 1.4E-100 | – | |
| ProSiteProfiles | 58 | 92 | 35 | 6.993 | ||
| ProSiteProfiles | 93 | 127 | 35 | 9.646 | ||
| Pfam | 94 | 140 | 47 | 3.2E-9 | ||
| TIGRFAM | 95 | 128 | 34 | 3.5E-5 | ||
| ProSiteProfiles | 128 | 162 | 35 | 8.528 | ||
| Gene3D | 147 | 261 | 115 | 6.7E-29 | ||
| ProSiteProfiles | 163 | 197 | 35 | 7.695 | ||
| Pfam | 165 | 191 | 27 | 1.0 | ||
| Pfam | 198 | 247 | 50 | 1.3E-17 | ||
| ProSiteProfiles | 199 | 233 | 35 | 12.529 | ||
| TIGRFAM | 201 | 235 | 35 | 2.5E-8 | ||
| ProSiteProfiles | 234 | 260 | 27 | 6.336 | ||
| Gene3D | 262 | 328 | 67 | 3.6E-18 | ||
| PANTHER | 263 | 401 | 139 | 1.4E-100 | – | |
| Pfam | 264 | 311 | 48 | 9.2E-15 | ||
| ProSiteProfiles | 264 | 298 | 35 | 11.696 | ||
| TIGRFAM | 267 | 300 | 34 | 1.9E-8 | ||
| ProSiteProfiles | 299 | 333 | 35 | 12.54 | ||
| TIGRFAM | 301 | 335 | 35 | 1.2E-10 | ||
| SUPERFAMILY | 303 | 503 | 201 | 6.28E-7 | – | |
| Gene3D | 329 | 419 | 91 | 1.8E-24 | ||
| Pfam | 333 | 382 | 50 | 8.6E-17 | ||
| ProSiteProfiles | 334 | 368 | 35 | 12.627 | ||
| TIGRFAM | 337 | 370 | 34 | 2.3E-8 | ||
| ProSiteProfiles | 369 | 403 | 35 | 11.049 | ||
| PANTHER | 395 | 523 | 129 | 1.4E-100 | – | |
| Gene3D | 420 | 531 | 112 | 2.9E-24 | ||
| Pfam | 435 | 484 | 50 | 6.5E-15 | ||
| ProSiteProfiles | 436 | 470 | 35 | 12.529 | ||
| TIGRFAM | 439 | 471 | 33 | 8.5E-11 | ||
| ProSiteProfiles | 471 | 501 | 31 | 7.75 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0022000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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