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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0023300 |
| Transcript ID | LotjaGi5g1v0023300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein OSB1, mitochondrial; TAIR: AT1G47720.1 Primosome PriB/single-strand DNA-binding protein; Swiss-Prot: sp|Q9SX99|OSB1_ARATH Protein OSB1, mitochondrial; TrEMBL-Plants: tr|A0A151RMN9|A0A151RMN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi5g1v0023300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4119223..4124252) extracted from Lotus japonicus Gifu genome v1.2.
CAAGAACTCTAAACCCAAAAAAAAAACTTAAAAAGAGAACGTAATGTGCAAACCCTACCAAAATCAAACCCTCAAAATTT ACCACCGGCGGGAAAATTTGATCGCCGGAGTCTATGAAACTGACACCGTTCCGTCGCTATTTTCCCCTCTTATCCACAAA ACCCATTCCAATTCCTTCCGTATTTTCTTTCCCTCTTTCTCCACAGAGATGTTCTCTTCCCTTCAGCACGTCCTCCTCCT CCTCCGTCGTACCGGGTACCAGCGCCGTTTACCGCCGCGCCCTCAAGTTCCAGCGTCCCGCGACGATTAAGTGGGCCCCG CAACTGGAGAACACCGCTACCTTCATTGGCTCCGTCACGCGCGAACCGAAGCTCGTGAACTCTAAAACCGGTAAATTTGG CGTTCACACTTTGCTCAATGTTCGAAGATCCAACCAACCCAATAGCTCCTCTTTCCGGTGAGTTTTTGGCGTTTACTCAC AATTTTTGTTGCTTTGGCTTTGGAATCTGTAACCACAACTACATTTTGTGCTGTGTTTTGTTGCAGGGTGCTTTTGATGA TGTGGAACTGTGTAGCTGAATTTGCTAGCAAAAACCTGAAACCAAATGATTTTATTTATGTTTCAGGTTGTTTGGGGTCT TACACAAAAGCTGATGATAGTGGGAACCTTCAATTGAAATTTCAGGTGCATCACTTTTTTCTACTTTTTCTTTGCAATTT GAATCATTTTTGAATGTTCGATTTCCAAGTTTGGTTATTTTGGCGAGTAATTCTTGCATGGACAACATGAGTTTTAATGT ATTTGTTATGATTTTAATGTATTCTAAACTTGTGATTAGTTATGCTTACAATTGAACTTTAGCTTTAGCTTACTTATTTG TTTGTTTATTTTTGTACTTGTGTATAAATTTGACATTTATTTCTCTATAGCTAGTTGTGAAGGAGTTAAATTATGTTGCT CAAAGGCCAGGCTATCAAGGTCATGAGAAAGAAAAACCTAAGGAAGGTATGTGTGGTTTGCTCATGGTCATACAAGTTGG TTTTCATTGGTCATCATCATTCTTGTTTAAAAGTGTACTGAAACTTCTTGCTCTGAGTAGTTTGGTAATGTTGACATGAT TTACCTAAGTGCATTTTGGATCAGCATTATTAGAATTAATTGTAAATATAATTGATTTTGATAAAATTAATTATGGTGAA AGTGATTGAAAGTTATGTGATTTAAGTTTGGATATATTTATGAAAACGGAAAGGTTTGTGTACGGTAATGTTGTGAAATT TCATACTTGATTATGTTCACTACTAAAGATTGATTTGTAGTTTCATTCACAATTGATTTTGGATCTAGATTCTAGAGGCA ATTGTGAAAGGCAACACCCAAGCATCCCAAAATGATTATGGCAATAGAGAATCAATTTTAACACTTGCAAACATGAAATC AAACATGTTTAAAATCTTACCTTCTAGCCCGAACAAGTGCAGATCAGTATTTGTTTTCTTTTGATAGAATGAGCAAATCT TTTCAAGTAAAGAGAAAAAGAACCCACATCAGGGTGAATGCTGATTTTCTAAATCTAGCAAGTTTATTGTAAAAGGAGTA TGTGGGAGAATTTGTTTGACTTGTAAGCATGTAACTATGCTGTAATCGCTTTTTTCTGAAAAGTGGTATTAAAGGTGGGT TGTTATGCATTTGAAACCATATAAGTCTGGCTACGTATAATTTGGGATAAATTACTACAATGTTCTTGTTTTCATATTCT TCTATAAACTTTGCTTACACCACGGAACAGGCTTATGCGTCATTCTTGATGGAGTTGTTTTTATCATTTTTATGGTTACT TAATTGATCTTAAGTTTTTAAAGTTTCATGCTTTTAAGTCTTACCTGTGGTTCTGTATTCTTTTTCTTCACACCATAATC AGATATAGATGAAGCTGGCATCCAAAATGATCAGAATAGGCTTTACCTATGGCAAGTGTTTTTTTCCAATCCTAGTGAGT GGTGGGATCAAAGAAAGCGCAAGCGAAACCCAAAGCAGCCTGATTTTAAGCACAAGGATACTGGTGAAGCTCTGTGGCTG AGTAACAATGATCCTCCATGGGTTAATAAACAACTCCAATTGCTTGACTCAAAACTTGAAGGAGGATTTGTAGGTCGTCG ATCTCGTGTCTCTAATTGGGTTTTTGATGAGTAGCCGAGAAAGCAATAAAAAGAGACCACTATGGTAATGGGTCCTAATA CTTGGTGACTTGGTACTTTGTGATTACAATTTGTTACCAAGTTAGTGAAATAGAGACCACTATGGTTATGACTTATGAAT GTCACTATTCACTATTCTGAATTCTCTAGGTCACACATATCTCAGCCGTTTGAAGGTTTAGCTGTTGACCCTGATAATCA CTCAATAGTCAATAGCCAAAATGAAAGAATTATTGATGATTGGTATACCTACAATCCTTTCTGTAAAGATATATTTTTAT TTATTTGTAAATAATATAAGATAGCATTAACAATTTTTTCAATTATTTACATGCATTAGAAGATGCACTTGAAGGAGAAG GACGTTGATTTCCCTTCACGGCCTTGATTACAACTCATCCATTATCATTGGCATGCTTTAAAAGCTATTTTAGGTGCCTA TTGGACTTCTCTGTGAGGTAATGTTGCACTTTCTTCTTGTTCATTCTATTCCTCTTCTTGTCAATTTAAGTCTGAGCTGA ATTGGTAATGGAGTTGTTTCTTGGTGTTTAATTTATCCTCTTCAAATTGGATCCATAACTAATAAAAATCCGTCAACATT TATGGTTGGGTGGGTGACGTATATTTTCTTTTACATGGGTCGTCCACTAAGGTCAATTCAATTCAAAGAAAACACTATAC TTCTATTCTTCTAGTTACCTGAGAGATCGACATAAATTCTCTAACTGTTCAAATTTTATACAACTTTTATCATGCGAAAA TTTTGCATTTATCATTAATTTTTTTTGTAATGTCCACTTTTTAAATATAATTAAAAAAATTATTCAATATAATTGAATAA AATTATAACAATAATGGTATTCGTATTTCGCAATATTGTCCACACTGAAGTCGCAAAATTCGCTGATGATTGAAGTGATT TCAAGTGGGGACGAAGACCATTAGGGTAAAGGATTGCACCACATAATTTACTTTTTGTCCCGCATCTTTGCCTGCTAGTG AGGACAGACAGAGGACTTTAGGGTATATAAGCAAGAATTCAAGATCAACCAAAAAGAACTACCGAGAAATAGATGAAAGT AAAAGAAATAATACAATAAGTGATGTGTTAAGAAAAGAAGAGATTAATATTAATAAATCGTGGTAAAAATGAGTTGGGAA AAAAACGGTGTATCAAAATTTTATACAAAATGCTACATGACAAGAGATCCAAATGCACGACCTGCTATTCAAAAAAAAAA AAATGCACGACCTAACACAATCACGTCATTTATGATTCATAAATAATATATTTATAAAAAAAAAATTAAAAATGGCAAAG CAAATCCTCTGCGTTTAACCTTCTAATTTCGACGCCTAAGACCTTTTGATTCAAATATTGTTGTAGTTGTGTTGAAGCCT CATTGCAGAGGTGAGTTGAGTCGTCGTTGCAAGAGGAGAGCTGCACTTTCTTTGTGGAAGAGGGCCTTCTGAGTTACGAA CTATAGTCCCTCCTAAAACTTTCTGATTTAGAAAATGTTGTAGTTGTGTGGAAGCCTTGTTGTGGTGGAGAGTTACGTTG CATCGTGGAGAAGGAGTTCATCCTTGCCTCCACCTTGTTGCCTTTGCATTTGGTGGCCTCTGAATCATTGTAGGTGCACC TATCCTGTGCTACCACTACGTCACCGTCATTAACTCATTTCTACGTCCCAATATTAGTAAGATTTGTTTTGATTTGATTT TTATTAATAATTGATAGCCCACTAGTTTATTTATTTGACTAATTAACTAATTCTAAAAAAAAATTCTTGCAACAGTGAAA GAAGGATTTTTCTCACATGAAGAAGAGGAAGTTACCGAAGTAAGTGAAAAAGGTCATGATAAACTAGAAGCCAGCCAATG TAGTTTATGAGAATGATGAACTTAAAGTTTGATGGCATTTACCTCTGAAGATAAAACTATCAGGTATTACACGAACTATG CATGATGTATGGGTTTTTGAATTTCTAAAATAAATACGCAAAAGTGAAAATGATGGAAAAAAAAATGTCTTACCGTAGGA TGTAGTCGAGCAAGGAAGTATGTGAATAATTCAAAGAATTTTTTGAATCCAACTCTTACTAAAACACAATGTAAGGCTAG ATTGAATCCATGTAGTTAGTTCATATGAAACAATTGGTTTCAAGAGTTATTCTTGAGTATAATCATGAATTAAGCCCAAC AAAGTACGATATCTTAGATGCAACAAGATTTTGAAGCTCCATATTTTGACCAAAAAAAAAAGCTCCATATAAAAAAAGAG ATTGGAACTTATTGATCGATTTGAAGTTAGTGTAAGTAGGAACATTCGATCTTTTGTGGTGGAAGTAAATGGGTATGAAA ATCTTACATTTGGAGAAAAAAAGATTATAGAAACTAAATTGACAAGGTAAGGCGTCTATGACTTTGGATGATGAAGCAAT TCAAAATTATTTAGTAGAAAGCTAAAACAAAATAATCAATTTTATTATGCGAAGGATGTGGATGATGAAGAATGTCTACG AAATTTTGCGCAGATGTAAGAATATTTTGATGAATTTTATTGACTTTTTTTCCTTTCTACAAATTAGTTTTGAATTAAGC ATCTCATGTCCCGAGTAACTACCTTACCTTGTCTATATAGTTTCTACAATCTTTTTCTTCAAATGTAAGATTCTCATACC CATTTGCTTTAACAACAAAAGATCGGAAGTTTCTATTTACATTAATTAAGCTTGATCATTAAGTTCCAATCTCATGGGAC TCCAAATTCTAGTTGCATCTAAGACCATATACAATGGTTAAACAAAAAATGTTTTGTTTAACCCTTTTCT
CDS sequence (LotjaGi5g1v0023300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACTGACACCGTTCCGTCGCTATTTTCCCCTCTTATCCACAAAACCCATTCCAATTCCTTCCGTATTTTCTTTCCC TCTTTCTCCACAGAGATGTTCTCTTCCCTTCAGCACGTCCTCCTCCTCCTCCGTCGTACCGGGTACCAGCGCCGTTTACC GCCGCGCCCTCAAGTTCCAGCGTCCCGCGACGATTAAGTGGGCCCCGCAACTGGAGAACACCGCTACCTTCATTGGCTCC GTCACGCGCGAACCGAAGCTCGTGAACTCTAAAACCGGTAAATTTGGCGTTCACACTTTGCTCAATGTTCGAAGATCCAA CCAACCCAATAGCTCCTCTTTCCGGGTGCTTTTGATGATGTGGAACTGTGTAGCTGAATTTGCTAGCAAAAACCTGAAAC CAAATGATTTTATTTATGTTTCAGGTTGTTTGGGGTCTTACACAAAAGCTGATGATAGTGGGAACCTTCAATTGAAATTT CAGCTAGTTGTGAAGGAGTTAAATTATGTTGCTCAAAGGCCAGGCTATCAAGGTCATGAGAAAGAAAAACCTAAGGAAGA TATAGATGAAGCTGGCATCCAAAATGATCAGAATAGGCTTTACCTATGGCAAGTGTTTTTTTCCAATCCTAGTGAGTGGT GGGATCAAAGAAAGCGCAAGCGAAACCCAAAGCAGCCTGATTTTAAGCACAAGGATACTGGTGAAGCTCTGTGGCTGAGT AACAATGATCCTCCATGGGTTAATAAACAACTCCAATTGCTTGACTCAAAACTTGAAGGAGGATTTGTAGGTCGTCGATC TCGTGTCTCTAATTGGGTTTTTGATGAGTAG
Protein sequence (LotjaGi5g1v0023300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLTPFRRYFPLLSTKPIPIPSVFSFPLSPQRCSLPFSTSSSSSVVPGTSAVYRRALKFQRPATIKWAPQLENTATFIGS VTREPKLVNSKTGKFGVHTLLNVRRSNQPNSSSFRVLLMMWNCVAEFASKNLKPNDFIYVSGCLGSYTKADDSGNLQLKF QLVVKELNYVAQRPGYQGHEKEKPKEDIDEAGIQNDQNRLYLWQVFFSNPSEWWDQRKRKRNPKQPDFKHKDTGEALWLS NNDPPWVNKQLQLLDSKLEGGFVGRRSRVSNWVFDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 35 | 257 | 223 | 1.3E-70 | – | |
| PANTHER | 35 | 257 | 223 | 1.3E-70 | ||
| Gene3D | 64 | 171 | 108 | 8.5E-10 | – | |
| ProSiteProfiles | 71 | 171 | 101 | 14.705 | ||
| SUPERFAMILY | 72 | 180 | 109 | 1.61E-9 | ||
| Pfam | 73 | 168 | 96 | 4.9E-8 | ||
| MobiDBLite | 216 | 236 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi5g1v0023300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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