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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0023900 |
| Transcript ID | LotjaGi5g1v0023900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT3G63470.1 serine carboxypeptidase-like 40; Swiss-Prot: sp|Q0WRX3|SCP40_ARATH Serine carboxypeptidase-like 40; TrEMBL-Plants: tr|I1M8J3|I1M8J3_SOYBN Carboxypeptidase; Found in the gene: LotjaGi5g1v0023900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4201951..4209024) extracted from Lotus japonicus Gifu genome v1.2.
GACACATTCACTACGTGTGCATTAAGTTTTTGTTATTTTTCTATCTATATTTTTGTCTACAGAACCACTGCCTTCACAAA ATCTTGTAATTATATATAGCATATAAAATGAGAGTTAAGATGAGTATTGCACAACAATCTCAATATAAACACTAATGTTG TCAACAAAATCATTGTTATGGTTGCCGTTGGTGGTGGTGTGCCACTTCACCATCTCATGCAACGCCAACCAACAAGATGA ATATCTCTACAAGTTCATCCAGTCACGAAGGTCTCACATGAAGCCTTCACATGGAGAAGCATGGAGTGTTGCAGATGGTG TTAATGGTGTGAATTATCAATATTTTTCTGAGGCACATGTTGAACAGCAGGGACGGACCCAGGTAGAATAGTATTTAAAT GTTATTTTTGTACCCTGAATTTTATGTATTGCTTTGTTTCAATTAATGATTGTTAATTTTAATTAAAAGTTAATTAAGCT TCTGTCCCAATATGAGTTTGGTCTTTCATCAAAGTAAAGAGTTTGAGTTTAATCATTTAAATTTAAGAAATACTTCAGTT TGGTCATCGCAAGAGGTGGAGCCTGAAGAGTGAAGACTTGTTATATATATGTCTTCACCAGTCCTACATGAAATGAACAC GTGTTTAATGTGGCATATGTGGATTTCTTTTTTACTTTTTTTTTCAATTCAAAGTTAGATTACTAATTTATTTATTTGTA AAAAACTTGATTATCAATTTATTAAAAATAAAATAAAAAACTCTTAAGTCTTAATTATTTTTCACCTTCATCATCATATT CATAAAAAAATGATCATCTTCATCTTCATCACCAAGCTTGTTATTCTTTATCCCATTTTCCATCTTCTTCAACATTTTTA CACAACAAAACTTAATTTCATTCATCATTTTTTTAGCAACAAAAAATGATTTTATTCATCAACTTTTTAAGAAAACAAAA TTGATTTCCAAGAAATAGCTTAAGAACCCCCGAAAGCGTTAGACTCCTTCTTCCACAACAGACCCAAGCTCAACCTCCAT CCCCAAGACCCATATCAGCAACCCAATATCCCACCTTGCTCTTTCTTCTCCTCTTTCCAGCAAACTCAATCTCAATCTCC CACCTTGCTCTTTCTTCTCCTCTAGCTTTCCAGCAAACCCATCAAAGAGAAAGAGAGAGTGATTTCTGGAATGTTCAAGA AGATAAAGAATTATAGATTAGAGACTAGTATGATGTTTTTTGTAATTTTAATTAATAATTAGTAATTTTAATTCATAATT TTATAAGTGGAGAATAAAATTTAATTCAAAATGACATTTTAGCCTCATTAAACACGTGATCATTCCACGTAGGTCCAGGT GAAGACATGTGATAACGGTATTGGATCACCACCTCCGGCGAGAACTAAAATTGGAGTATTTTTAAATATTAGGGACTAAA TTAAAACTTTACTTAGGTGATGAACTAAAGCCAATCTTCATCTATTATACAGGGACAAAAAGCTTAGTTGGCGCTTTAGT TAATGTATCAAATTTTTGCCGCATTTACCTATTTTTCCTGATTCGTGTCATTAAAGGTTGCTGATAAGGTGAAGGCTTTG CCGGGACAACCTGGAGTGGATTTTGATCAGTATGCAGGGTACGTTACAGTGAATGCTAAAGCTGGAAGATCACTGTTCTA TTACTTTGTTGAGTCACCTCATAATTCTTCCACCAACCCTCTTGTTCTATGGCTAAATGGAGGTAACTCTAGAATACACA ATACATTTCTTTTGCATGCATATGATTTTCTAGCCTGATTTTGACCACAAAACTGAATGGTCACATATTGTGCTTATCAC ATATGTGCTTATTTATAGGAGTCTTGAGTAATGATATATCCACACCTCATTTTTTAAACACTTCATTTCCACCTCTTTTT ATTTCTATCTCTCTCATCTTATCATCTATCATATTTCATATTTTCTCTCTCTTACTTTTTTTTTTCTTCCTATCTCTCTC ACCATTCCACCTCTCCACCTTAAAAGAGAGGTGTGGATGAAACATTACTCTAGTTTGTTTAATAGAGGTTTTATGCAGCT CCCTCCCGCACTATTATAAATCATTGATTTTTGTAATCGCGAGTAGGTTTAATCTAAATAAAAAAGTGACCTTTTAAATT AAAGAAATGGTCGTGACCGCATACAATTTAAATTCTATGTTCACCCATTTTTGATTTTTTTTATTAATATTTACTATCAT GTTAAAATTTGAAGTTGGAAAAGTACTAGTTTACGATAATTATAAGTTTAATTCCTAGGTGTATATTTATTTCATAATTT TATTACGTGAAACTGTATAATTGTTAGATAAATATATCAATACTAAATAAATGTAATTAAGAAAAACACAAGAATCTAAT TAATATGCTGACGAGTCTGAGCCTTATTGGGTCCAATGGGTCGTGATTGGGATGCGCAACTTATTTGTCTCAAGGGAGAA AAACAACGCAGCGGATGTGCTAGCTCGACAAGTCTATAGAGATGGTTCTCATCAACATAGTGTTTTGAGGCTCCCTCATC TTCTGCCGTTGAGGCTTTGTGTCTAGATGTGATTTCTTAATCTGGTTCTCTTTTAGTCTTCCTCTTATAAAAATGCTTAT TTGAAAATGTTCTTTTTGCCCAAATAATCATCAGATTCTTATGACCCATCTACCCACCAATATTCCATAGTCAAACACGG CAAGATATAGATGATTTATGAGCTTTTTTTTATGCTAATTCCCATCCACAATTATTTTAGACGTGATAAGAAAAAAATAA TTAATCATCAATCATTATCAACCAACGCACTAGAACATTAGCATCATACACTTAGTGGAATTCCACACGAAAGCCATGAG TCATGTCTGCCACCAACCATGATACTACAAATTCTTGAGCAAAAATCTTTCATATTTTTAGGGTTTTTTTTTTTTCATTT TCAGTTATTCATCATCACTTTTAAATTTAAGGTAATATCCACTATTATTTGTTAATTATATTTTTTATTTTAATTTAATC CTTGTCTATTTATTTATACGCTCATCATAATGTTAGAGATATATACAAGATAATAGAAGATTAACTATAATCTTAAATTG TAAAAAAATCAATAATGTTAGCAAACGTTAAAAAAAACAATAATCTTCATAAAAATGAGTAAATTAATTAATTTTTATTT ATTATTATGACTAAACTCTTAAAATGACCTATAAATGCAATTAATGAAATATTATAATGACTACATTGTAATAATAAATA ATTCTCTGCAAATCTCCCTCTTGTTCTCCCTAAAAGATAACTCAAGTGGTAAAAACTGAAGGACATATGAGCTACGAATG AAACGATTCAAGGATCAAATTCATAGAGGAGAAATTTGGCAAAAAAAAAAAATGTAGTGTTTATGCTGTGTTTTTCGAAG AAAAAAAAAAACTCAATTTCCTAATTTTTCATTTGTTATCTTATAATTTTCTAAATTTTATATATTTTTTTTTCTTTAGA GCATGCAATCTAAGCATTGAGGCTTAATATTGTATTTGAGTACACTTTAGAGAATGTTGACACAATGAATATTTCTATTA ATGCATCTCTTTGCCTATATATTTATATATATATATATATATATATATATATATGATATATGATATACAGGACCAGGGTG CTCTTCCTTTGGGTATGGAGCCATGCAAGAACTAGGACCTTTTAGAGTCAACAGTGATGGAAAAACTCTTTACAGAAATA AATACGCATGGAACAATGGTAAGCATGCTCTAGCTAAATGAAAATGCACTTGCTTGTCTTTGCGCACCCATTGGCTTATC AAAAAAAACCTTGCTTGTCATTGCTAATATTTCCTAAAATTAATAATTACTTAATTTAAAAAATAATCACTTATGCACTT TTTGAATTGTTTGTATATGAATTTTTGATACAAAAATCTAATTATTTCTTTAAACTATTTTTTGTAGCTTTTGGAATAAT CAATTATATCTAGTGGATTTTAAAGTGAAAAACAACTTAATATTTGTAAATAAATATAATTAAATTTCTTCTTTTTGAAA AAATATTTTAAAATAAAATTGGTTTTTTTATTCAATTTTGAAATCAATTAATTTTAAGTGAACACAAACGAACTCAATAT CTTCACATTCAATTTTGATTTTTTATGTTTGCATTGTTGTGATTCATAACTTATGAGCTCGCTCTACAACTGGCAGTGGC AAATGTTATATTCCTTGAGTCTCCAGCAGGAGTTGGCTTCTCATATTCAGACAATTCATCAGATTACTCAAACACTGGTG ACCACATCACAGCTATAGATTCATACACTTTTCTTCTTCACTGGCTGGAGAGATTCCCACAGTATAAAACAAGAGACCTG TTCATAACCGGTGAAAGCTATGCTGGCCATTATGTCCCTCAGCTTGCTAACATTATACTCTCAAAAAATAAGCTAGACAA GAATCACCCGATAATCAATTTGAAAGGGATAGCGGTGAGTCGTCATACCTGTCACAAATCAATTAATTGTTCAAAAATCT GTTCATGAATTGTTTATATTATATTTATAATATGCCCCTCGAGCTGGCTTAAAATGCATAGGTTCAAGATCTTGTGTTCA AATTCAATTTTTTATTAGAATAATAGGCAGATTGAACTCTACTTTGTCGGGTTTTAAATAACAGTTGTGCTTGCGATTAT GTTGTTGAATCGCAAACAAATACAAGTTGATGTAGTTGCAATAGCGGGGATTGATAAACCTTTTATGTTGTGGTCGCAAT TTCTATCACACAATTACTTGGTCATAGAGAGTCTAATATCATCATGCCATGAATCAATTATACTAAAAACCTAAGTTTTT TAGTGAAGATGTGGGCATGAATAATTTTATAGTATATTTCTAACAAAATCTTTCAGTGTACAATTTATTGAATATGCTAT TTGTTCTCAAATTTTTCTATTCTTAGTGCAGATTGGAAATGGCTGGATTGATGATAAATATTGTAACAAGGGAATGTATG ATTATTTCTGGACGCATGGTCTGAACTCTGATGAAACTCGTAAAGGAATTGAAAAGCATTGCGACTTTAAGACTTCCAAC TTTACAAGTGAATGCGTCAAATATACAAATAGAGCAGATACTGAGATGGGAAATATTGACATATACAACATATATGCTCC ACTTTGCAATTCAACAGAAAGTTCTGCCACCAACTCGGTAAGTTGCATGCTAAATTTTGGATGTGTTTAATTTTTCTTAG AATCAATTCTATAGCGTCATCTAGAAGCTACTCACAAACTTATCCACATATATGATTGATTTTAGCTTTAAAATAAATTG TGAAAGAACTTTCCAATGTGCACTAAATGCATTCGTTTTCATTCTTGACTTTGATAGTTTTCTCAAGCAATCCTGATTTT AAAATAGTCCAACAGTAATCACATCTCATACACCTACGTTTTCTCTTAAAATCATTATTCCTAATCACATGTGGTCATAT ATCACATCTATCAATTCTCTCTTCTCTTATCTTCCTTCGCCTCTCATATATCCTCTTTCATGTTAAGTTGGTTATCTACC TAATATTTTCCCTTAGTCCAAATGTTATTAGCTACAACAAAATAAGAGCAAAGTTTTCATCATATATCAAAATAACTTCA ATCATCCCGTTTATAACAACTTAAATATATAAAGTCAAAATTGACAACAATATTACTTACCAATTATCATACAAACTAAT GCAAAGTTCCTAGAAATAAGGAGCACAAAGACCATTCTATCATGTTCATAAATACTGAGTTAGAAAATTTTACATACTCA ACATTACAGGGAAGCGACTTTAACCCTTGTTCTGAAGATTATACAACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGC TCTTCATGCTAAAGCCACAAAATGGTCACCTTGCGGGTACACACAATTCAATGGTTATGTTTTCTTCACCACAATTCGTT TTATTTCCTCAATTAATGTGTCTAATGCTTCTTTTCAGCAATGTGGCATGGACAGATAGCCCGGCAACTATTCTACCCAC TATTAAACGGTTAATATCAAGTAGTGTTCTACGAACCTGGATATACAGGTGATTTACATTAAGCTTCAGAATGTGCTTCA TTACATGAAAGACATTATCACGTGAAGACACCGTATTTTGATAGTTACACCAATATCTTTGTAACATAACAATATTTACA ACACATATAATAACATCAATAAGATTTTACAAGTGCATCTATATCTCGCTAATATGTCAATGATATCTCATGTATGTCAC TCATTATTTTTGTTCAATAATGCAGTGGCGACACAGATGGTCGCGTTCCCATAACATCATCAAGATACTCTGTGAATTCT TTGAAACTTCACGTGGAAACAACATGGCGTCCATGGGGCTCTGGCAATGAGGTAATGAAACTTCATTACTTTGTATTCAG AACTTACCAGTCATTTGAATGGTTTTATATTATACGTCTGACACCGTACAACATATATATAGGTTGGAGGATATGTAGTT GGGTACAAAGGACTTACACTTGTTACTGTAAGAGGAGCTGGTCACATGGTTCCAAGTTACCAGCCAAAGAGGGCACTAAC CATGATCACTTCTTTTCTTCGTGGAGAACTTCCTCCTAAATTAACCTCTTAAGACTATTTGGTATATGCTTAAAATTGAT GTGGAAATGTGATAGATGATTTTCATATAAAAACATTTTAGGCTTTGTGTGCATGATTGGAAGGCTCTGGTGGTCAAATG GTGCTCTTAATATCAATATGTCATGATTGTTTGGATTTACTTAAACTAGTCAAATGCCCAAAAGCTGTAAATATGTTTGC AAATTGTGTGAATCTAATCTTGGTTCTTCATTAGGCCAGTAGCTTGGTTTATAGAAATTATTTGTAAAACAATTATTGCC TTCCCTTAATCCAACAACTGCATTATAATGTGAAAGGAATCAGGGTAGTAACGGACAATATTACAATTCTTATTTTTGTT GTGCTTCAGCTTTAGTAACCGATGTATGTTGGGC
CDS sequence (LotjaGi5g1v0023900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTCAACAAAATCATTGTTATGGTTGCCGTTGGTGGTGGTGTGCCACTTCACCATCTCATGCAACGCCAACCAACA AGATGAATATCTCTACAAGTTCATCCAGTCACGAAGGTCTCACATGAAGCCTTCACATGGAGAAGCATGGAGTGTTGCAG ATGGTGTTAATGGTGTGAATTATCAATATTTTTCTGAGGCACATGTTGAACAGCAGGGACGGACCCAGGTTGCTGATAAG GTGAAGGCTTTGCCGGGACAACCTGGAGTGGATTTTGATCAGTATGCAGGGTACGTTACAGTGAATGCTAAAGCTGGAAG ATCACTGTTCTATTACTTTGTTGAGTCACCTCATAATTCTTCCACCAACCCTCTTGTTCTATGGCTAAATGGAGGACCAG GGTGCTCTTCCTTTGGGTATGGAGCCATGCAAGAACTAGGACCTTTTAGAGTCAACAGTGATGGAAAAACTCTTTACAGA AATAAATACGCATGGAACAATGTGGCAAATGTTATATTCCTTGAGTCTCCAGCAGGAGTTGGCTTCTCATATTCAGACAA TTCATCAGATTACTCAAACACTGGTGACCACATCACAGCTATAGATTCATACACTTTTCTTCTTCACTGGCTGGAGAGAT TCCCACAGTATAAAACAAGAGACCTGTTCATAACCGGTGAAAGCTATGCTGGCCATTATGTCCCTCAGCTTGCTAACATT ATACTCTCAAAAAATAAGCTAGACAAGAATCACCCGATAATCAATTTGAAAGGGATAGCGATTGGAAATGGCTGGATTGA TGATAAATATTGTAACAAGGGAATGTATGATTATTTCTGGACGCATGGTCTGAACTCTGATGAAACTCGTAAAGGAATTG AAAAGCATTGCGACTTTAAGACTTCCAACTTTACAAGTGAATGCGTCAAATATACAAATAGAGCAGATACTGAGATGGGA AATATTGACATATACAACATATATGCTCCACTTTGCAATTCAACAGAAAGTTCTGCCACCAACTCGGGAAGCGACTTTAA CCCTTGTTCTGAAGATTATACAACTACCTACTTAAATCTCCCTGAAGTTCAAGAGGCTCTTCATGCTAAAGCCACAAAAT GGTCACCTTGCGGCAATGTGGCATGGACAGATAGCCCGGCAACTATTCTACCCACTATTAAACGGTTAATATCAAGTAGT GTTCTACGAACCTGGATATACAGTGGCGACACAGATGGTCGCGTTCCCATAACATCATCAAGATACTCTGTGAATTCTTT GAAACTTCACGTGGAAACAACATGGCGTCCATGGGGCTCTGGCAATGAGGTTGGAGGATATGTAGTTGGGTACAAAGGAC TTACACTTGTTACTGTAAGAGGAGCTGGTCACATGGTTCCAAGTTACCAGCCAAAGAGGGCACTAACCATGATCACTTCT TTTCTTCGTGGAGAACTTCCTCCTAAATTAACCTCTTAA
Protein sequence (LotjaGi5g1v0023900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSTKSLLWLPLVVVCHFTISCNANQQDEYLYKFIQSRRSHMKPSHGEAWSVADGVNGVNYQYFSEAHVEQQGRTQVADK VKALPGQPGVDFDQYAGYVTVNAKAGRSLFYYFVESPHNSSTNPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGKTLYR NKYAWNNVANVIFLESPAGVGFSYSDNSSDYSNTGDHITAIDSYTFLLHWLERFPQYKTRDLFITGESYAGHYVPQLANI ILSKNKLDKNHPIINLKGIAIGNGWIDDKYCNKGMYDYFWTHGLNSDETRKGIEKHCDFKTSNFTSECVKYTNRADTEMG NIDIYNIYAPLCNSTESSATNSGSDFNPCSEDYTTTYLNLPEVQEALHAKATKWSPCGNVAWTDSPATILPTIKRLISSS VLRTWIYSGDTDGRVPITSSRYSVNSLKLHVETTWRPWGSGNEVGGYVVGYKGLTLVTVRGAGHMVPSYQPKRALTMITS FLRGELPPKLTS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 26 | 26 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| ProSiteProfiles | 1 | 22 | 22 | 5.0 | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| Phobius | 17 | 24 | 8 | - | – | |
| PANTHER | 22 | 488 | 467 | 1.1E-226 | – | |
| PANTHER | 22 | 488 | 467 | 1.1E-226 | ||
| Phobius | 25 | 492 | 468 | - | – | |
| Gene3D | 73 | 343 | 271 | 1.0E-106 | ||
| SUPERFAMILY | 82 | 485 | 404 | 3.24E-126 | ||
| Pfam | 88 | 483 | 396 | 3.8E-135 | ||
| PRINTS | 161 | 173 | 13 | 6.5E-28 | ||
| PRINTS | 174 | 184 | 11 | 6.5E-28 | ||
| PRINTS | 210 | 235 | 26 | 6.5E-28 | ||
| ProSitePatterns | 224 | 231 | 8 | - | ||
| Gene3D | 346 | 486 | 141 | 3.6E-36 | – | |
| PRINTS | 454 | 467 | 14 | 6.5E-28 | ||
| ProSitePatterns | 454 | 471 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi5g1v0023900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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