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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0027000 |
| Transcript ID | LotjaGi5g1v0027000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Polyadenylate-binding protein; TAIR: AT1G49760.1 poly(A) binding protein 8; Swiss-Prot: sp|Q9FXA2|PABP8_ARATH Polyadenylate-binding protein 8; TrEMBL-Plants: tr|A0A0B2PYJ0|A0A0B2PYJ0_GLYSO Polyadenylate-binding protein; Found in the gene: LotjaGi5g1v0027000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:4488157..4494026) extracted from Lotus japonicus Gifu genome v1.2.
TAGAAATGATAGATCACACTTGCAAAATTGTCTTTGCTCTGTTTATCGTCCTCCATGATGAATCACCCCCATCCCATTAG ATCTCCGACGATTCTTGATTCACTATTCAAATCTTCCTTCTCGATTCTCCTACCTCGACCGCCCATCGGAACCAGCGGTT TAAGAGCACGCACGCCCACAGACGACGAGCTACCGATGTCGTCATTCCCCAATCACCCCATCCACCACAACGACACTCCT CCGCCTTTCCAGGTCCCACTTAGATCTCTCTGTCTCCTCACAATAAATTCACGCCATGAACCATCTTGTCAGATCCAATC TTTTCCGCCGCAAACCACGCTCTAAAATCCATGTCGTCATCACAACCAAATCACACAAATTCCATCAGAGTATCTTTACA GGTACCTACCTGCATCATCGATTCACATTCACACCAATCCATTCCAACCTCTTTTAGCTAAAAAAAAAAAATCAAATCAA ATCTAACATTGGGCAAACACAACACTAATCAGCAGTGGGCTTTAGCCCGACCAAGATTGTCAGGCCTACATTGAACTAGG GTTTCCTCAGCACCACCTATATAGTTCAAAAACTGACATGTATACCAGTGCGGTGCAGCCAACCTCTGCCCCTCCTTACT GTTGAACTGAGAAAAAAAATACAAAAAAATTTTTCAGTTTCTCCGCCGTCATTCTCACCCTATCCTCGCCCACCGTTCGG ATCTCCGGCGGGTCTATCTCTACTATATTCTCTCACAAAATCAAAAAAAGTGCTTCGGTTAGGGTTTAGTTTATCAGAGT TCAATTTTTCTCTATTTCATCGGAATTTTTATCATCAATGGCGCAGATTCAGGTGCAGCATCAAACTCCTCCGGTTGCCG CTGGTCCGGCTACTCCCAACGGCGCCGCTGGCGGTGTGGCTCCGGCCCCGAACGCGAACTTCGTGACGACGTCGTTGTAC GTTGGGGATCTTGACCAGAATGTCAACGATTCGCAGCTCTACGATCTGTTCAACCAGGTTGGACAAGTCGTTTCTGTTAG GGTTTGCAGGGACTTGACCACTCGCCGCTCACTCGGTTATGGCTATGTGAATTTCAGCAACCCTCCTGATGGTTAGTCTC TGAATTTTGCACGTTTTTTTATTTTATTTTGATGAATCTCCTTCAATTTGTTTGTTTTATGGTGATGTCGAATTGGTGAT GATTATGGTTGAATTGGAATTTTCTGTTCTGTTCTGACATGTGGGTATGTTGTTGTTTTCTTAGCTGCAAGGGCATTGGA TGTGCTGAATTTCACTCCACTGAACAACAGGCCTATTAGGGTCATGTATTCCCATCGGGATCCTAGTATCCGTAAGAGTG GTACTGCTAATATTTTTATCAAGGTGACCCTCCTTATCTCTTACCCATTTTGAGGTTTTTGTATGTATAAATAATTAGGG TCAAAATTGCAATTTGATAGATGGTATTACTTTTCAATCATATTTATGTTTTTGGGTTGATGTTTAAATTTTCAAAATTT AGATCTAGGTAGAAGGATTGAAGCTTTGTTGATTTAGGAGTTAGGATTGAAGTGAAGTGGAGAATGATTCTGATGTTTTA CTCTATTTGTTTAGTTGTGGGGCTGGGCAGGAAGTGTCTGTTGTGTGTTGTTTTAATTGACTTATTGAATCTGATGATTT GCTAATGATTGGTGTACTGTTAGTGTAAATCATCCAATTGAATTTCGCCAAATTAGAAAATGTGTTTTTGTTTAAATTAA AATTTAGAACAGAAGTAATTGTTCCTCCAGGCATGCTGTGATTGGTTGCTACTGACTGTGTATATCTGTTAAACTCTCAT TGTTTTTTTAGTTGTGGGGCTGGGCAGGAAGTGTCTGTTTGTATGCTGTTTTAATTGACTTATTCGGTCTGATGATTTGC TAATGATTGGTGGTGCAGAATTTGGACAAGGCAATTGATCACAAAGCGTTACATGATACTTTTTCTTCTTTTGGAAGTAT TCTTTCCTGCAAGATTGCAACTGATGCCTCGGGCCAGTCCAAAGGCTATGGCTTTGTTCAGTTTGACACTGAGCAATCTG CGCAGAATGCGATTGATAAGTTGAATGGCATGCTGATCAATGATAAGCAGGTTTACGTAGGTCATTTCCTACGCAAGCAG GATAGAGATAATGTTCTCTTTAAGTCAAAGTTCAATAATGTTTATGTGAAGAACCTCTCGGATTCATTTACTGATGAGGA GCTGAGGAATGTTTTTGGAGAGCATGGAACCATTACCAGTGCTGTTGTAATGAGAGATGCTGATGGTAGGTCAAAGTGTT TTGGGTTTGTCAATTTTGAAAGCCCAGATGATGCTGCCAAAGCTGTTGAGGCACTGAATGGGAAAAAGTTTGATGACAAG GAGTGGTATGTTGGAAAAGCCCAGAAGAAGTCTGAACGAGAGGTTGAACTGAAAGGAAAATTCGAGCAGACTGTTAAGGA AACTGTTGATAAGTACCAAGGTGTGAACTTGTATCTGAAGAACTTGGATGACTCCATCACAGATGAAAATCTGAAAGAAC TGTTCTCTGAGTTTGGTACAATAACTTCATTCAAGGTATGTGATATGATTCTTTTTGCTGGTTCTGTATTGGTCAATTTT TTTGTCTTGTTAGAAGAAATTGAGCATTACATTTCTTTTTGCCTCTTGCAGATCATGCGAGACCCAACCGGGATAAGTAG AGGATCGGGATTTGTTGCATTTTCAACTCCTGAGGAAGCATCACGAGCTGTAAGTATAAGACTGGTAGTAGCTATCTTTG TTTTGTTTAATTTTCACGGAGTAACTTAATTGCTCATATTCAAATCTGTTGGAACTTGTAGCTCGGTGAGATGAATGGCA AAATGATTTCCGGCAAGCCTCTGTATGTTGCCCTTGCTCAGAGAAAAGAAGATAGAAGAGCAAGATTACAGGTAATGTGG TAGAAATAGTGGTTCTCCAGTTTTTTATGTGCTTTATTACTGCACAGATTTTAATATTAGCCCAGAAAATTCCTGAATTT GGTATATTGCATGTTTTCCTCTTAGTAGTTTGCACATAAGAAAGAAATCCCCTGTATGTGCACATCAACAAAAAAAAGTC TTGAAAACCTTAAATTTCATTTTTTGAAACCAAGATACGAGTTACAATACTTTAAGGAATGATTATTTTAGTTGAAGGTG CCAAGAGGCAGGTCTTAGGCACTAAGGTAAGATGTCAAGTTGAGAGATATGGCCAAGGATTGCCTATTTCTGCCTTAGGC AGAGTGCCCCTTCAGTGAGGTACACTTTTCTTGCTCTTGAGTGTGTTTTTCCCTGACAAGAAAAGCCATATAAAATGAGC AAATGGAGTTTGTATTTTTTTTTATAGAATCGAATTGTGGCATTTGATTTATGTTGCCAACCTCACATAGTTCGGTAATC ATATTGCTTGATTGATTGTTATTGTGGTGTTCATAATAAGTAATTTTTCATTTAAAATATTTAATGTCACATTAATCAGT TAGTTTTTCCCATCTCAAGTTATATATGCTCTAGTATGATGGTTATGTTTTAGTATGATTGGTGGGTTATTGCTAGTTGG GAAATGATAAATGTAAATTAGAGAGGATCTTAGCTTATTGTATTTATATGTGCAGCTGTTGGTTTCTCACCTTAATTACT GATTTTATGCAGGCACAATTTTCACAGATGAGGCCTGTTGCAATTTCACCTTCTGTTGCGCCCCGCATGCCAATCTACCC TCCTGGTGCTCCTGGTCTAGGGCAACAATATTTGTATGGGCAAGGCCCCCCAGCCATGATTCCTCAACAGGTAATTATGA ACAACTTAGTAGCGTATTAACTATACGTTTTATTTTTGTTGATAGATCATGCATTAGAAAGTTGATGTTTTATTGTAAGA TCGAAATTTACATAGAAGTCAATGAGTTTATGGCATTGGTGTGCCTGCATGGGATGTCATGTGTTTTGTATGTGTGCATG AGGCATGTGACATGTATGCATGAACGTTTGCATGGAGCATATTAATTTAAAATATGAGGTAAGTTTCTCATGACCATCAA TGCATAGTTGTATGCTCAAGATTAACTAATCTTACTTCTCATTTATTACAGTGTTCATTTTAGTATGTATATGAGAATGA ATAGAGTAAGAAACTGCATTCCTGTAGTGTGTTGCGTCCTTTCTTAATATTTCTTGATTTTAAATATACTTTTACATATT TTAAGCTGGCATTTTGAAAGTTATTTAAGAATGAAATGATTTTTTTTGTAATCGAGCTCAATGGTGCAGTGTGATCCATA TAGCCAATCTCACTTAGTCGGATAAGAAGCTTTTCTTGTTGTTGTCTCTCAAGTGTCAAAGAAGTATTTGACATGTGTCT AAGCCGGTAAAAATGATGATTTAATAGGATGTCTGATGAGGAGTTTATTATGTCATGTGCCATGTTTCATAGCTATTCAC ATTTCTGTTGGTCTTAATGTTCTTTTACTTGCGAGCCTCGCATTTGTTTGTTAATACATAATATATAATACCCGAGTAAA GTTGTTTTAGTTTTTATTCTTCTATTAGGTCTGCATGTTACATGGTTCAGTGCATACTGTGTTTGTTTCTGAAACTATTT GGCATACATATATTGTCAATTTTTTAAGTTTATTTGTTTAATAACCAATTTATTCATATTGGTAATCTGCCAATGTTCAG GCTGGATTCGGATACCAGCAGCAACTCATGCCTGGGATGAGGCCTGGTGGCGCTCCAATGCAGAGCTTCTTTGTTCCAAT GGTTCAGCAGGGCCAACAAGGCCAGCGCCCAGGAGGACGCCGAGCAGGTCATGTTCAGCAACCCCAGCAGCCAATGCCTA TGATGCAGCAGCAGGTCTGCTCATGCACATCTCTGGTTTCACCCCTCATTTTCACTGTCTGGCTTGTTGATAATTAGAAT TCTGTTTTTTTTGTCTCAGATGCTTCCAAGGGGACGTGTTTATCGTTACCCCCCTGGTCGCAACATGCAAGACGGACCTA TGCAAGGTGTAGCTGGAGGAATGATGTCAGTCCCTTATGACATGGGTGGTCTTCCAATCCGCGATCCTGTGGGACAGCCG ATGCCCATTCAGGCTTTGGCTACAGCTCTAGCAAATGCTCCCCTTGAGCAACAGAGAACTGTAAGCCCTGTTTCCTATCA TTATTTCAGCACTTTTTTTTAGTTGTAAACATGTCATTATGTGCACTATGTTTGTGTCATTCACCCTCATACTGAAACCT TGTCATGAATGGTTTTGCTAGATGCTTGGTGAAGCTTTATACCCGCTAGTTGATCAGCTGGAACATGATTCAGCAGCTAA GGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTGATTGAGTCACCTGATGCTCTGAAGGCTAAAG TTGCTGAAGCCTTGGATGTGTTGAGAAATGTTGCTCAACAGCAAGCCAACAACCCGGCCGATCAACTCGCATCACTCTCT CTCAATGACAATCTTGCGTCTTAGATTCTGTTAGTTAAACATGAATCCAAACTCTGGGTGATTTTTTCTATGTTAGTACT TAGTACTGTGAAAACTTGTTATGTTTGATGTTTTTATGTTACATTTTGGCTTGCTCTAGAAACTGCCCAACACTTAGATT GATTATTTTATGGATTTATGGTTTGCTTTATTTCGTTGGTGCGCTATTTGATTGTTTGTGTGATTGCAGGACATCTTATC CGGGCAATATTTTTTCTTTAAATGAATTGTTTTAGTATGTGTGAAATTTTGTTTGTTTTCAGCCATTTGATTGGTTGAAT ATTTGAGTTATATTTTTTCAATATTGTAGC
CDS sequence (LotjaGi5g1v0027000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGCAGATTCAGGTGCAGCATCAAACTCCTCCGGTTGCCGCTGGTCCGGCTACTCCCAACGGCGCCGCTGGCGGTGT GGCTCCGGCCCCGAACGCGAACTTCGTGACGACGTCGTTGTACGTTGGGGATCTTGACCAGAATGTCAACGATTCGCAGC TCTACGATCTGTTCAACCAGGTTGGACAAGTCGTTTCTGTTAGGGTTTGCAGGGACTTGACCACTCGCCGCTCACTCGGT TATGGCTATGTGAATTTCAGCAACCCTCCTGATGCTGCAAGGGCATTGGATGTGCTGAATTTCACTCCACTGAACAACAG GCCTATTAGGGTCATGTATTCCCATCGGGATCCTAGTATCCGTAAGAGTGGTACTGCTAATATTTTTATCAAGAATTTGG ACAAGGCAATTGATCACAAAGCGTTACATGATACTTTTTCTTCTTTTGGAAGTATTCTTTCCTGCAAGATTGCAACTGAT GCCTCGGGCCAGTCCAAAGGCTATGGCTTTGTTCAGTTTGACACTGAGCAATCTGCGCAGAATGCGATTGATAAGTTGAA TGGCATGCTGATCAATGATAAGCAGGTTTACGTAGGTCATTTCCTACGCAAGCAGGATAGAGATAATGTTCTCTTTAAGT CAAAGTTCAATAATGTTTATGTGAAGAACCTCTCGGATTCATTTACTGATGAGGAGCTGAGGAATGTTTTTGGAGAGCAT GGAACCATTACCAGTGCTGTTGTAATGAGAGATGCTGATGGTAGGTCAAAGTGTTTTGGGTTTGTCAATTTTGAAAGCCC AGATGATGCTGCCAAAGCTGTTGAGGCACTGAATGGGAAAAAGTTTGATGACAAGGAGTGGTATGTTGGAAAAGCCCAGA AGAAGTCTGAACGAGAGGTTGAACTGAAAGGAAAATTCGAGCAGACTGTTAAGGAAACTGTTGATAAGTACCAAGGTGTG AACTTGTATCTGAAGAACTTGGATGACTCCATCACAGATGAAAATCTGAAAGAACTGTTCTCTGAGTTTGGTACAATAAC TTCATTCAAGATCATGCGAGACCCAACCGGGATAAGTAGAGGATCGGGATTTGTTGCATTTTCAACTCCTGAGGAAGCAT CACGAGCTCTCGGTGAGATGAATGGCAAAATGATTTCCGGCAAGCCTCTGTATGTTGCCCTTGCTCAGAGAAAAGAAGAT AGAAGAGCAAGATTACAGGCACAATTTTCACAGATGAGGCCTGTTGCAATTTCACCTTCTGTTGCGCCCCGCATGCCAAT CTACCCTCCTGGTGCTCCTGGTCTAGGGCAACAATATTTGTATGGGCAAGGCCCCCCAGCCATGATTCCTCAACAGGCTG GATTCGGATACCAGCAGCAACTCATGCCTGGGATGAGGCCTGGTGGCGCTCCAATGCAGAGCTTCTTTGTTCCAATGGTT CAGCAGGGCCAACAAGGCCAGCGCCCAGGAGGACGCCGAGCAGGTCATGTTCAGCAACCCCAGCAGCCAATGCCTATGAT GCAGCAGCAGATGCTTCCAAGGGGACGTGTTTATCGTTACCCCCCTGGTCGCAACATGCAAGACGGACCTATGCAAGGTG TAGCTGGAGGAATGATGTCAGTCCCTTATGACATGGGTGGTCTTCCAATCCGCGATCCTGTGGGACAGCCGATGCCCATT CAGGCTTTGGCTACAGCTCTAGCAAATGCTCCCCTTGAGCAACAGAGAACTATGCTTGGTGAAGCTTTATACCCGCTAGT TGATCAGCTGGAACATGATTCAGCAGCTAAGGTTACAGGCATGCTTTTGGAGATGGACCAGCCTGAAGTGTTGCATCTGA TTGAGTCACCTGATGCTCTGAAGGCTAAAGTTGCTGAAGCCTTGGATGTGTTGAGAAATGTTGCTCAACAGCAAGCCAAC AACCCGGCCGATCAACTCGCATCACTCTCTCTCAATGACAATCTTGCGTCTTAG
Protein sequence (LotjaGi5g1v0027000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAQIQVQHQTPPVAAGPATPNGAAGGVAPAPNANFVTTSLYVGDLDQNVNDSQLYDLFNQVGQVVSVRVCRDLTTRRSLG YGYVNFSNPPDAARALDVLNFTPLNNRPIRVMYSHRDPSIRKSGTANIFIKNLDKAIDHKALHDTFSSFGSILSCKIATD ASGQSKGYGFVQFDTEQSAQNAIDKLNGMLINDKQVYVGHFLRKQDRDNVLFKSKFNNVYVKNLSDSFTDEELRNVFGEH GTITSAVVMRDADGRSKCFGFVNFESPDDAAKAVEALNGKKFDDKEWYVGKAQKKSEREVELKGKFEQTVKETVDKYQGV NLYLKNLDDSITDENLKELFSEFGTITSFKIMRDPTGISRGSGFVAFSTPEEASRALGEMNGKMISGKPLYVALAQRKED RRARLQAQFSQMRPVAISPSVAPRMPIYPPGAPGLGQQYLYGQGPPAMIPQQAGFGYQQQLMPGMRPGGAPMQSFFVPMV QQGQQGQRPGGRRAGHVQQPQQPMPMMQQQMLPRGRVYRYPPGRNMQDGPMQGVAGGMMSVPYDMGGLPIRDPVGQPMPI QALATALANAPLEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDALKAKVAEALDVLRNVAQQQAN NPADQLASLSLNDNLAS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 26 | 26 | - | – | |
| Gene3D | 2 | 125 | 124 | 2.3E-24 | ||
| PANTHER | 28 | 641 | 614 | 0.0 | – | |
| PANTHER | 28 | 641 | 614 | 0.0 | – | |
| SUPERFAMILY | 38 | 207 | 170 | 8.15E-51 | ||
| ProSiteProfiles | 38 | 116 | 79 | 18.717 | ||
| SMART | 39 | 112 | 74 | 5.8 | ||
| CDD | 39 | 118 | 80 | 6.99145E-44 | – | |
| TIGRFAM | 39 | 632 | 594 | 1.3E-222 | ||
| SMART | 39 | 112 | 74 | 2.4E-23 | ||
| Pfam | 40 | 110 | 71 | 2.5E-19 | ||
| CDD | 124 | 200 | 77 | 5.37027E-49 | – | |
| ProSiteProfiles | 126 | 203 | 78 | 18.393 | ||
| Gene3D | 126 | 213 | 88 | 1.9E-23 | ||
| SMART | 127 | 199 | 73 | 1.1E-24 | ||
| SMART | 127 | 199 | 73 | 24.0 | ||
| Pfam | 128 | 196 | 69 | 4.4E-21 | ||
| Gene3D | 214 | 318 | 105 | 1.4E-27 | ||
| SUPERFAMILY | 215 | 301 | 87 | 5.1E-29 | ||
| CDD | 216 | 295 | 80 | 3.09726E-45 | – | |
| ProSiteProfiles | 217 | 294 | 78 | 19.331 | ||
| SMART | 218 | 290 | 73 | 5.3E-29 | ||
| SMART | 218 | 290 | 73 | 0.87 | ||
| Pfam | 219 | 287 | 69 | 8.0E-23 | ||
| SUPERFAMILY | 316 | 414 | 99 | 3.36E-29 | ||
| Gene3D | 319 | 419 | 101 | 5.4E-27 | ||
| CDD | 319 | 397 | 79 | 1.91532E-46 | – | |
| ProSiteProfiles | 320 | 397 | 78 | 20.593 | ||
| SMART | 321 | 393 | 73 | 0.3 | ||
| SMART | 321 | 393 | 73 | 9.1E-27 | ||
| Pfam | 322 | 390 | 69 | 4.7E-21 | ||
| SUPERFAMILY | 501 | 650 | 150 | 6.93E-33 | ||
| Gene3D | 554 | 638 | 85 | 8.7E-34 | – | |
| ProSiteProfiles | 559 | 636 | 78 | 20.385 | ||
| Pfam | 565 | 631 | 67 | 2.2E-25 | ||
| SMART | 571 | 634 | 64 | 5.6E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi5g1v0027000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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