Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0032200 |
| Transcript ID | LotjaGi5g1v0032200.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Acyl-CoA-binding domain protein; TAIR: AT4G24230.6 acyl-CoA-binding domain 3; Swiss-Prot: sp|Q9STX1|ACBP3_ARATH Acyl-CoA-binding domain-containing protein 3; TrEMBL-Plants: tr|A0A072VPF6|A0A072VPF6_MEDTR Acyl-CoA-binding domain protein; Found in the gene: LotjaGi5g1v0032200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5320078..5325895) extracted from Lotus japonicus Gifu genome v1.2.
GTAAAAAATAAAACCTCAATTTACATTATATCAACGTGACAAGTTTTGCTAAGCTGACAAATTTGAAGACCAATTTTTAA CGCGCACGGGTGGTTCAAGTTCAACCATGGTGGTGGTGGATATACTAGGCCTTTTCGCGCTTTTCCGTCACAACACAACA CAACACAACGTCGTCGATTACCCTTTCCCCTGCGTCTCTGCAACATCGGGACCCACACCAACCCCAAAAAGTTTACCAAA TAAATTTAAAAAATCTGATTTATACACATCTTTATCTTTCAATAGTATATAGTATATTATATTTCAAAAACCAAAGCATA AAGTGAAAAAACCCCAGAATATGCTTTACTCTGTTGTGCAGATTATCCTTTCCTCCTCTTTTCCCTCATCAGTTCCTTCC TTCTAATCATTTCCTTCCTAAATTCTCTCTCTCTCTCTCTCAAACCCTTTCATTTAAACCTTTCCTCTTTCATCTTCACC CTTCACAAACACCATTCATTCATCACTCAAAAAACAAAAAAACAAAAAGAGAAAGTGTTGTTACTTGTTGCGTTATGGAA CTCGTGAGCGCGAGTGATCTTTTCGTCACTGCGTCCATCGCAATCCTTCTCTCACTCCTCGTCGCGAAACTTGTCTCGTT AGCCACCACCACCGACACTCAAACCGCCACGATCCATCATTATCATGAAGAAGAACCGGCCGGTCCGGTTCTTCAGGAGG ATCGGCTTACGGTTCAGACCGAGAGCAAGGTTGGTTTTATTAATCCGGTTCAAGTTGCAACCAATGTGGAAAAAACCGGA CACGAATTGGTCGAAGAGGACACGGACCTCACGGTCGAGTCCGGTTCGGATTCTGCCGTCGGGTTAACGGCGGAGGTGGT GGAAGAGGAAGCTGCGGAGCGCGTGGGGGAGATTGTTGAAGAGGAAGCTTCGGCGGAGACGGCGGTTCCGGTTGTGGAGG GAGGTGAGGGGAGCGGTGAGGATTGGGAATGGGAAGGGGTTGAGAGGAGTGAGTTGGAAGAGTTGTTTATGGCGGCTACT GGATTTGTTGCTAGGAATGGATGTGGTGGTGGTGGTGGTGGCGGCGATGATGGTGGAAGTGATGTGCAGATGGAGTTGTA TGGGCTTCACAAGGTTGCGACGGAAGGACCTTGCCGTGAGTCTCAGCCAATGCCTCTCATGCTCTCTGCACGTGCCAAGT GGTATCAAATTCTAACCCTCACCTAATCACTATTTTCCTCAGTGTTACCAATTTATGATTTGTGTTATGCTTTGTTGAAC TGAATTGAATTGGATTGCTTAACTTGCTGAATAATTTTCAGTTTGGTAGATACTCCATGTGTTAAAATCATTACTCAATT GTTATTTGTTACTCAATTTTCAGAAGAGAAGTAAAAGAATGTTATCATTCTTCTAATTTGGAAAGTATAAGTTTATTTTG TGGAAAAAAGTTGAGAGTTGTGGGAGGATTGGAAATTTTCTCCTAATTTGCATTGCCTTGTTCTTTACTTTACGTGTGTG GTTTTTTCTTGCTCTTTCTTAAGGGTTTGGACTATGGTTAATTGGAGTGAAGAAAGACAAAGACTTGTTTCTTGTTGCAT AAGGAGTATGTTGGGTCCCAACATATGATTAGTTACAGGGTCCATTTTTAGTAAGGTGTGAATGTAGAAAAATTCCAATA ACTGACAGTTTGTTTAGGCACAAGTGAAGATGAAAGTTTTCATTGCGGGTTAGAGGATAGGTTTGGTTTACTTACTGAAA GGAAAGGACACGAAACAAAGCTGAATTGGGTGCTTAAGATCATAAATAAGATTTAGGCTGTGATGTTAGCAGAAGTAGTC ACTAGGTTGTTCTCACGCATTTGATCAATATTTTCAAAGCTATGAAGAATGGACACCGGGTACGACACAAATGTCGGCAG ACACACCACTCACATGTGTGTATCAAACTATCAACGGAGAGTATGAGATGAATTAATCTCGACTATTCATGTATGGTTAT ATGATCAAGATTAGCTGCTCTCACTTGTCATCTTCCAACTTGATACACACTATATACAAGGATACTAAGGAAGAAGTGAC ATTCTCAAATGAAATATATTGGAAACATTTCTTAAAACTTCTCTGGTTTTAACTTTTTATTTTGTAGTTATAGTTGATGT TTTGAAAGATATCAAGTGTCAAACCTTATATGTCGGTCAGCTAAGTGTCTAAGTTGTGTAATGTCCAAGTCTCATGTCAG CTAACTGTCCAACTCGTACGACTAAGTGTCCTAGCCGATAAAAATATCTTTTAATAGGACACCTGATGAGTAGTGTCAAA CATTTGTTATACGAGTGCCATATGAGTGTCAATGTTTTGACTTGACTTCAGGAATGAAAAGTGTTTGTGCTTCATAGTTC CCATGATGTAATATGCACAAAATTTGGACTGATAAATGAACCAACCATGAAAGACAATGCAAGGATAATTCATGAGGAAA AAATAAGTGTCAAACCTTCTAACTTGATAAATAAATGTAAGCAACACATATGGCCGTGCTGTACAAGTTCCACGGTATAG CTTGATTGCTAGTTATAATAACAGGGTTCAGTGCTGCTTTGTATGAGTGATCGACAGTACTGATTCCGTTGTGCAAGGAA TGCTTGGCAAAAGCTGGGGAACATGAGTCCAGAGGTTGCTATGGAGCGGTATATCAGCCTTCTTTCAGATAAATTTCCTG GATGGATGAAAGATAGTTCTGCTGTGAGTTTGTGCTGCTGAGGCATAATTGTGTTTAATATCTTAAGTCACGTGAGCAAG GGAGTTGAGGCAACCTTTTTTGCAGGGAACAGGTGAACATGAACCGATGGAGTCAGAAAGTTCTGAGTCGGCTGCTCCAA GCACATCTTTGCCTCATCAGCAAATGATGGTAACTGATAGGTAGTCAGTCAGTCCTTTATTGACATTATTGTTCATGCCT CTGTTTTGAATAACTTTTCCGTCAACATTGTTAGATTTAAATTTTGTGGGGCTTGTTACTGGTATATTTGAATTTATGGT AACTACATCTCTTCTGCAGAGAACTCGAACTAGAGTCTGGTGCTCAGGACCATAGCCCTCTTACCGAGTCAGATTTGGAG AACAAGGTAAGATTTTATAACCATTCAGCCTGATAGATTGATGAATAATAAGTAGCTTGGATAATTCTGAATCTTATTTA CATAGACATTATCTGATGACCAAATTCCAATCTAGACCCATGATGCTTTCATTCAATCTAAATCAATAGTTAAGACGCTT TTAATAAATGAGGAGCTAATAGCAAGTCATGGTCCGCAAATTGCTGATTGCTGAAGGAGTTTTTAAAGAGGGGGGGGGGG ACAGTTGGAAGTTGTGTTGTAAATGAGGTGTTGGTTTCTGAAGCTATACTATCACCGTTGTTTGATTTATTCATGTCACA TCCCTACTCTTATAGGGAAGTGAAGCTCAAAGCTCTAGCTAGGCATAGCGCTTTTCCACGCTTCAGCTCAAAGGGTTCTT GAATGGGGGAACATTTTATATAAGATATAATCATTCCTAGTCCTCTATCTCACATCTTAAACTTTTGGGATATGTAGGTA GTTGCAAAAACTGCAAGTTTTGAACCCTTTTTTCCATTCATTAAAAGTCTTATCTTCTATTTCTTTTTTCTTTTTTTTGA TGATGTCTACCAGCAAAGTTTTGACGTATAGAACCTGTAAATGCAAATCCCTTTAGGGATGAAACTATATTGATGTTGCT GTCAAATTATTCCATGCCATGTTACTATCTATGTTTTTCTCAATGTCATGGTTAGCTATTTCAGTAATTGAAGTTTGCAA GTAAATTCAACTTTGATATATTCACACTAATTTTTTCTAGTATCCCAATTCCGCCTTTTTCCCCCTTTCACCTTTCTCTT TTTTCTCATCACATTCACATGAGTCATCATATCTCTCATTTTTCTCACATATATTCCTTTCTCACTTAGAGTGGATATAG CGTGTTTATGAACATTAGTTTTGTGTATAATAAGTTAGCTTAGCATGGAAATTTTCAGGTTAAGAAATGATGTCATCTCT CTGCTTATATCCCGCGCGACGGGACATATTCCTGCATTTATTTCAGCAAAATGAAGATTGATTCCAAGAATGTAAGCTTG TTCGAAGTATGCAAGGTTCTTGGGCTGTTTGTTTTCTCCTATGTTGCGTAGACCATGTGCTGATTATGACGTGTTCTTCA ATATCAAACCGCTAATATATCCATATATTTATTGTTCATAAATAAAAGAATGTAAATATGATCTTTTATGTGCTGCCAAA GGTTACGTGCTCTTCCTGGTTGTTGAAACTAATTTATTAATCTTATCTTACTCCTGTGTCCATTTGAGGTAAATATGGTC ATGCTATCTTTTGCCAGTATACCAAACTAGTCCAATTTAAAGCACCTATTTTTAAATTCTTAGTACTGTGAAATACGGCC ATCCAAAACTGTTGTTACATTTGCTATCTTTGGATTTTCATTCTGGTATTGGTGTTGCGGTAAATTCTTGTTAATATATG GTTCTGAAGTCTGCTATAGTGAATATATATAATATCGTTGAATTTCTTGTATATTCTTCCAGCAATCTGTAGTTTATAAT ATTAATATGTCCTTTTCAAAGTAGGGTGTGTTGTTAAATAGCACTAGTCTTTTATTCATCACCTCCATAATAAAGACCAA GATTAAAAAAATTAAGAAACGTGATATTTTTTTAGAGGCAAATGTTAGTTGTTAATTGTTAGTAAATTAGTTCCTTCGTT AGGGCTTGAACCTTGACCACTCACCCTGCAAATCTCTTCATTTCTCTTAGCTCACCAAGTAAGCTACCCTTCTCTTGAGC AAAGAAAAAAGTGTAATTGAGATAGATGAAAAAGTGAGTATGAGTTTTTTTTTTTTTTTTTATAAACAAAAGTGAGTGTG AGTATATATTGAAGTTTGTTCAATATGGTCTATTGAAAAATTGGACTATGGAAATGCATAAAAATTACCATAAATATAAT ATTATGAAATTGAATGGTTGTGATTAAAATTTTTAGAATACAAAATTGTCATTTTCCATGTATTCCTTCTTCACCCTCCT ATGCATCTCAGTCACTCACCGATCTTGTCTTTGCCATCGTTGTCTGCGATGAGCCAGCCACCTGCTACCATGTTGGTACT GTTGGACCTGATTATGCATATTGTTCACATCATAAACTCTAGGCAGTTGAGATAGAACCAAAAAGACTCAGCCTCTAAAA TACAAGTGTGCATATGTTCCGTAGTTGCCAAAACCCTTTACTATACACTAATCAAATATCTAACTTTCTACACATAAAAG TGCTGTAATCCCTTCCCCTTTGTTAGCCTAGATCATCTCTCTTGTTTCAGTCTGTCTCTCCCCATTTCTATTGTGATACA ATCAAATATTAGTACATGTCAGGATCCCTAAATTCCTCGAAAGGCGCATGCTGCAGTGCTTCGGTTAACTTGTGTGCCTA AAGAGGGAAGCTGATGCCTCCATGACCTGATCTTCTCATGTGCTCAAGCCAGTAATCGGTTGGGTCGGGTCAGTCCATTA GCCTCCAAGACACCATGGTCGGTTAGCGGAGCGTCTTCAAGGTTCTTTCTTGTAGTTTGGTTCCTTCTCAACAAAAGACG CCTTCTGGAAATGGTTCCAAATGATTTTGTTCATGTTATATATGGCTGGTAATGTGACCTGATAGCTACTAATGTTGAAC ATATAAATTTCAAGTTATTTAGTTATTTGTTGCGGCAATACATACGGACATTAGCACA
CDS sequence (LotjaGi5g1v0032200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACTCGTGAGCGCGAGTGATCTTTTCGTCACTGCGTCCATCGCAATCCTTCTCTCACTCCTCGTCGCGAAACTTGT CTCGTTAGCCACCACCACCGACACTCAAACCGCCACGATCCATCATTATCATGAAGAAGAACCGGCCGGTCCGGTTCTTC AGGAGGATCGGCTTACGGTTCAGACCGAGAGCAAGGTTGGTTTTATTAATCCGGTTCAAGTTGCAACCAATGTGGAAAAA ACCGGACACGAATTGGTCGAAGAGGACACGGACCTCACGGTCGAGTCCGGTTCGGATTCTGCCGTCGGGTTAACGGCGGA GGTGGTGGAAGAGGAAGCTGCGGAGCGCGTGGGGGAGATTGTTGAAGAGGAAGCTTCGGCGGAGACGGCGGTTCCGGTTG TGGAGGGAGGTGAGGGGAGCGGTGAGGATTGGGAATGGGAAGGGGTTGAGAGGAGTGAGTTGGAAGAGTTGTTTATGGCG GCTACTGGATTTGTTGCTAGGAATGGATGTGGTGGTGGTGGTGGTGGCGGCGATGATGGTGGAAGTGATGTGCAGATGGA GTTGTATGGGCTTCACAAGGTTGCGACGGAAGGACCTTGCCGTGAGTCTCAGCCAATGCCTCTCATGCTCTCTGCACGTG CCAAGTGGTATCAAATTCTAACCCTCACCTAA
Protein sequence (LotjaGi5g1v0032200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MELVSASDLFVTASIAILLSLLVAKLVSLATTTDTQTATIHHYHEEEPAGPVLQEDRLTVQTESKVGFINPVQVATNVEK TGHELVEEDTDLTVESGSDSAVGLTAEVVEEEAAERVGEIVEEEASAETAVPVVEGGEGSGEDWEWEGVERSELEELFMA ATGFVARNGCGGGGGGGDDGGSDVQMELYGLHKVATEGPCRESQPMPLMLSARAKWYQILTLT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 1 | 121 | 121 | 1.1E-45 | – | |
| PANTHER | 1 | 121 | 121 | 1.1E-45 | – | |
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| Phobius | 9 | 24 | 16 | - | – | |
| TMHMM | 10 | 29 | 20 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 223 | 194 | - | – | |
| PANTHER | 94 | 216 | 123 | 1.1E-45 | – | |
| PANTHER | 94 | 216 | 123 | 1.1E-45 | – | |
| Gene3D | 149 | 218 | 70 | 2.2E-10 | ||
| ProSiteProfiles | 154 | 223 | 70 | 11.876 | ||
| SUPERFAMILY | 154 | 216 | 63 | 2.49E-7 | ||
| Pfam | 156 | 216 | 61 | 1.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Fatty-acyl-CoA binding | Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group. |
Expression pattern of LotjaGi5g1v0032200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…