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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0033400 |
| Transcript ID | LotjaGi5g1v0033400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetratricopeptide repeat protein 7A; TAIR: AT1G27460.1 no pollen germination related 1; Swiss-Prot: sp|Q9CB03|NPGR1_ARATH Protein NPGR1; TrEMBL-Plants: tr|A0A151S1F0|A0A151S1F0_CAJCA Tetratricopeptide repeat protein 7B; Found in the gene: LotjaGi5g1v0033400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:5479902..5485169) extracted from Lotus japonicus Gifu genome v1.2.
CTTTGCTTTGGCTTTCCATTCACTTTCATCCTTTAAATGTTGCTCCAACTTGAACAACCTCTTAACTTCCCTTCACATCC ATCAGCATGAAGTATGAACACAGAACACATCATTGTTGAAACTTGAAACAAACTCAAAGATTCTACCAACTTCTGCTGCT ACGCTGCACGGCATTTGCTATTCCTATTACTATGAGCAGCACCACACATTCTGCACACAAGAAGAAAGAGAAAGTATTAA AAATATCACTAAAATCAAATCTACCCATAAGTGCATGTTCGAATCAACTTCTCTATTAATCATTTTTGTAACTCATTCGT CACACAAAGTTTCATTTTTGAGAACATACTCCCCAACGAGATACTTAACGTGTTAGCTATGACATTGCACGGTTCGATAC ACATAACATTTAGTATCTAATCTCATTTGGCCTCACAAAGTGTTTTCTCCATTGGTGTTATTCAGTAAGATTATTTGAAT TGGTTAGTACTTAGTGGCTCCTCTTTATTTTAAAGGTTTAAATTTTTTTAAGGTGCTGGATCTTTTCAACCAATAAGGGC CAGTTTCAAAATACCCAGAGAGAGAGAAACAGAAAGTTCAACAGAAGGGTACCTTTCATAGTGTTGAATACTGCTAAAGT TCAGGTTTTGGAATCTGGGCTGTGGTAAGTCCAAAGTTCTGTTCCCATTATTGTTTGTCTTGCCTTTTTCTCACCCCTCC CACATGCCCACCGTGTTCTTCTGTAATAACTTTTGTCCTGTTTTCTTTCCAATGACAACCATCATTACCTTTTGAAAAAT AGTATGTCATATCCATCTTCTCACTTCCTTTTCACACCAACTAACTTGATTATCTGTTCCCATGAATCATGGGGTTGTGT TTTCTGTTGAAAAATGTTGTTAGTGTATGTTTGAAAATCAATTCCCAGTAAAAAGTTAGTAACTTTTGGCAAGAAGAAAG ATAAGCTGATCCAAAACATGTTATCCATCATTTTTTACATTGTTATGTCTTGTGCTTTATCAACCATTTCATGACACATT TGAAGGGTACTTTGCAGCATTCTTCAATACTACTTAAGATCAATATTGCTTTAGCTATTTCAACTGTATTGATCAATATA CAAGTTGTAAACTTGTAATTTTATTGAATTTTAACAGAACCGTTTCTCTTGACACATTGATCCAGAAGTGATTTCAGCTA GCTACACTTTCAAAAGGAAAAATCCACACAAATTTTTGGTTTCATTCACTAAGTAGTGATTTTGGAAGATGTTGTGTGCT TGCTCCGGGGAGCAATTCAAATTTGAAGAGGCGCCGCAGTCACCGGAATCCCTGGCAACAAGGGATTTCTCTGCTAGTGG ACTATCTTCAAATTCAAGGACAGGGGATTGTGAATCCAAATTCAGTGAGGCCCAAGTAGAAGATGCTGAATCTACTCTAA AAGAAGCTCTCTCATTAAACTATGAGGTATGAATCAATGTGTCTTATTCTGAAATCATTTAATTATGGAAGAACCTTGTA TGAGTATCTTTTGAGTGCTAGAACTGATTCTGAGAAAAAATAAGTTGATCCAAGTACTGCTTAGTTTGAGTTTTCTCTTT TTGTTGAATTTAAGGAAGCTCGAGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGGAACTTTGATGCTGCCCTTCAAGTG TTTCAAGGTATAGACATCAAGGCTATAAGCCCAAGGATGATTAGGGCTATAACTGAAAGAACCAAGCAAAGAAAACCGCG TTCAAAGGCCGATAATGTGCTTCCAAATTTGATGTCAATGCATTCAGTAAGCTTGCTTCTTGAGGCAATTTATCTTAAAG CCAAATCCTTAGAGGAACTTGGGCAATACACTGGTATTAGCACCTTCATATCTCTTTTAGACGTTTTACATGTTCTTGTG TTTTGTTTGAGTAATCATGCTGTTGTTAGAAGCTACAACTTTTGTATGTACCATATTGAAAAATTATGTTCTTTGATGGA GTAGATCTCTATAATAGCATCAATGCATCATAAACAGCACATATAAGTGCAACTACGCGCATGTTTGGAAATTATTCTAC ATTTGATTCTTAAACCATAATCATTTCTGGTGGGAAGCTTCAATGAGTTGCTGCTCGGTTTTAGAATTGATTCTGAGGAA AGAGAAGCTAATACAAATATAATTTATGAATTTTTTTTATGAGAAAACACTTATATAGTGTTTTGGCACTCAAGTGTGCC AATTCTGATTATTTACCGCTGCTTTTTCATTAACCAGAGGCTGCAAAGGAGTGCAGAATAATTGTGGATACAGTTGAATC TTCTTTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCCAGAAATTTTCCACAGAGCATTGGAGTTGC TTCCAAATCTATGGATCCAGGCAGGCTTTCTAGATGATGCTGTCACCGCTTATCGGCGTGCTCTGACCAAGCCCTGGAAT TTGGAGCCAAGGAGGTTGGCTTGTCTACAAAAGGATTTAGCCACTACACTACTCTATGGTGGTGTTGAAGTAAACCTACC CCCTCAGTTGCAAGTGAAAGGTCCAAGTCCAACAACACCTTTGAGTAATATTGAAGAGGCAATACTTTTGCTGTTAATAC TCTCAGGAAAGATGGCACTTCAGGAGATAGAATGGGATGCTGAAATAATGGATCATCTCACATTTTCTCTTTCAATTACT GGAATATTTGAATCACTGGCAGATCATGTATTGCAGATCCATCCAGGTACCCGGGGATGGAATCACTTGCTTCCAAAATT GCAGAATATTATCACATGTTGTATCTTTCAATTTGTCATTGTTAATTTTCACCCACCTTACCTATTTTTATCTGGTTCTT CCCCTGCAGGTATCTATGACCGAGCTGAGAGGTGGTACTTTCTCGCACTTTGTTACAGTGCAGCAGGACACAATGAAACA GCTTTGAACCTTTTGAAGAAAGCTTGTGGTAGTTCTGAAGCAAAGAATAGACCCCATTTTCCTTCATTTTTGTTTTGTGC AAAACTGTGTTCCCAATATCCAATCCATGCTTATGAAGGCATTAAATTTTCCCAGGAAGTTATCGATCTAGCCCAGCATC AAAATGAGCACTTTTTGAGCCAAGGGAGAAAATTTCTTGGTATCTGCCATGGAGCAGCGGCTAGAATATCTGTACTGGAT TCTGAAAGAGTTTCATTTCAAAGAGAGTCTTTAAACTTTCTAAACAAAGCTGTTTTAAACGGAAATGACGACCCTGAAGC AATATTCAGCCTTGGACTGGAAAATGCAGTTCAAAGGAATCTAAATGCAGCTCATGACAACATGATGATGTACTCAGACA TGATGGTTGGAAGCTCTAGAAGAGGTTGGAAGCTGTTAGCACTTATAGTATCTGCACAGCAGAGGTTTAAGGATGCAGAA ACTTTAGTTGATTTTGCTTTAGATGAGTCTGGGAGAATAGATCAGTTAGAACTACTAAGATTGAAAGCTGTGCTTCAAAT TTCTCAGCAGCAACCCAAACAAGCAATAGAGACCTACAGAATCTTGCTAGCAGTAATACAAGCAAAAAAGGAGGCTTGGC TTCAAGCTAAGGAGGAGCTCCATCAAGCAAAAATATTCAGGGATGAGGTGTGTATTACTTTTAAGGAAACAACGCTAAAA CACCCCATGAATGTTTGTAAATTCTTCTACAATTGATTTTAAAGTCAGAACCAATTCTGATGAAAAGCTTATGTTCACAG CTTTTAGGTTTAAGAACCGATTATGAGAAAAGAGAAGTTGATCCGGACATGCTATAAAGTTGATTTTGCAACAAACCAAT GGCTATTGTTTAATGGAAGTTGCCAAGAAATAAGAGCTTATGTTAAGATTAGTTAATTAAAATTTGAAACCATTAACAAT ACTCCTCTACCTTATTACATGTGAAAACTTCATTTGTTGTGACGCAAGATGATACCATGCTCGTGTATGATTAGATGAGA TTCATCTCCTGAATGCTTGAGAACAATTTATATCCCTTCTTGCCTTTCCATCTCTTTGCAGGAATTAACAGAACAGAAGT TAGAAATGGAAGCTTGGCAGGATTTGGCAACCATTTATGCAGATCTTAGATCTTTTCTTGATGCAAAAGCTTGCGTTGAT AAAGCCAAGTTGATAGAATTTTTTGCTCCTAGGAGTTGGCATACAACAGGTAGGTAACTCTGTTAGGATTAGGATCATCT TATATCATATCATTGAAACATTGTCTCTATTTCTCTCTTCACAAATATTCAGAAGACCCCACTTACTTAATAGGTATGAA GAGATAGATACAGAAAATTTCAACATGACAATGTCATGTGAAGTTTCCGCATGAGAGAATGATCCCTGTCCGTTCATGTT TTTGTTGATGAACCACATGTTTCTGCCATGGCAATTGGCAACACCATGTATTAACAAATCACTAATCTGCAATTAATGAC GGTGAAAATGGCAGGGAAGTTGTTTGAAGCTCAATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAA TAGAACCGGATTACATTCCCAGCATCATTTCAACTGCAGAATTGTTGATTAAACTTGGTAAAGAATCACTTCCAGTTGCA AGAAGTTTCTTGATGAATGCTTTGAGATTGGAACCCACAAACCATGATGCTTGGTTCAAACTCGGATTGGTTTCAAAAAT GGAAGGTTCATTACAGCAAGCTGCAGATTGCTTTCAAGCTTCACATGAGCTGAAGCTATCAGCTCCAGTGCAAAAATTTG AGTGATTGAGACTTTGGAGAACTATAATTTTTTATGGCTGAGGGAAAATTAGCTTAACCAAGAGCATAATAGACATGCCT TGGTTATCCTTGCTTGGGGGTTAAGTATTTGTTAAAAATGTATAGCTAAATATAGCTACTTTTCTATAGATTTATACTAT GTTTAGATCAGATTCTATTTTCTCATAATTAATTCCGACACGCAAAAACTATTCACAAAAGTTTTCTCCCAAAATTGATT TTAGTTATAAAATCAGGATTTCCAAAAAAGCACTTACTTCATTACTGTCCTTCACTTTTAACGTGGAAAATCATAAGTTT CCCTTTGTAATTGGTATAAAGACATGCCTTTATGATGTCCTATCAAACAACCAATGTAGTACTAGCTGGTTTTTTTGTCT CCTACATGTGTGACTACTGTCTGCTCTACCCTAACTTCAAGATGTTGTCAGTGAGATTTGGATCTTGA
CDS sequence (LotjaGi5g1v0033400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGTGTGCTTGCTCCGGGGAGCAATTCAAATTTGAAGAGGCGCCGCAGTCACCGGAATCCCTGGCAACAAGGGATTT CTCTGCTAGTGGACTATCTTCAAATTCAAGGACAGGGGATTGTGAATCCAAATTCAGTGAGGCCCAAGTAGAAGATGCTG AATCTACTCTAAAAGAAGCTCTCTCATTAAACTATGAGGAAGCTCGAGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGG AACTTTGATGCTGCCCTTCAAGTGTTTCAAGGTATAGACATCAAGGCTATAAGCCCAAGGATGATTAGGGCTATAACTGA AAGAACCAAGCAAAGAAAACCGCGTTCAAAGGCCGATAATGTGCTTCCAAATTTGATGTCAATGCATTCAGTAAGCTTGC TTCTTGAGGCAATTTATCTTAAAGCCAAATCCTTAGAGGAACTTGGGCAATACACTGAGGCTGCAAAGGAGTGCAGAATA ATTGTGGATACAGTTGAATCTTCTTTTCCTAATGGAATGCCTGAGGGTATTGGTGAAGATTGTAAGTTGCCAGAAATTTT CCACAGAGCATTGGAGTTGCTTCCAAATCTATGGATCCAGGCAGGCTTTCTAGATGATGCTGTCACCGCTTATCGGCGTG CTCTGACCAAGCCCTGGAATTTGGAGCCAAGGAGGTTGGCTTGTCTACAAAAGGATTTAGCCACTACACTACTCTATGGT GGTGTTGAAGTAAACCTACCCCCTCAGTTGCAAGTGAAAGGTCCAAGTCCAACAACACCTTTGAGTAATATTGAAGAGGC AATACTTTTGCTGTTAATACTCTCAGGAAAGATGGCACTTCAGGAGATAGAATGGGATGCTGAAATAATGGATCATCTCA CATTTTCTCTTTCAATTACTGGAATATTTGAATCACTGGCAGATCATGTATTGCAGATCCATCCAGGTATCTATGACCGA GCTGAGAGGTGGTACTTTCTCGCACTTTGTTACAGTGCAGCAGGACACAATGAAACAGCTTTGAACCTTTTGAAGAAAGC TTGTGGTAGTTCTGAAGCAAAGAATAGACCCCATTTTCCTTCATTTTTGTTTTGTGCAAAACTGTGTTCCCAATATCCAA TCCATGCTTATGAAGGCATTAAATTTTCCCAGGAAGTTATCGATCTAGCCCAGCATCAAAATGAGCACTTTTTGAGCCAA GGGAGAAAATTTCTTGGTATCTGCCATGGAGCAGCGGCTAGAATATCTGTACTGGATTCTGAAAGAGTTTCATTTCAAAG AGAGTCTTTAAACTTTCTAAACAAAGCTGTTTTAAACGGAAATGACGACCCTGAAGCAATATTCAGCCTTGGACTGGAAA ATGCAGTTCAAAGGAATCTAAATGCAGCTCATGACAACATGATGATGTACTCAGACATGATGGTTGGAAGCTCTAGAAGA GGTTGGAAGCTGTTAGCACTTATAGTATCTGCACAGCAGAGGTTTAAGGATGCAGAAACTTTAGTTGATTTTGCTTTAGA TGAGTCTGGGAGAATAGATCAGTTAGAACTACTAAGATTGAAAGCTGTGCTTCAAATTTCTCAGCAGCAACCCAAACAAG CAATAGAGACCTACAGAATCTTGCTAGCAGTAATACAAGCAAAAAAGGAGGCTTGGCTTCAAGCTAAGGAGGAGCTCCAT CAAGCAAAAATATTCAGGGATGAGGAATTAACAGAACAGAAGTTAGAAATGGAAGCTTGGCAGGATTTGGCAACCATTTA TGCAGATCTTAGATCTTTTCTTGATGCAAAAGCTTGCGTTGATAAAGCCAAGTTGATAGAATTTTTTGCTCCTAGGAGTT GGCATACAACAGGGAAGTTGTTTGAAGCTCAATCATTATACAAGGAGGCCTTTGTTTCCTTCTCAGTTTCATTGTCAATA GAACCGGATTACATTCCCAGCATCATTTCAACTGCAGAATTGTTGATTAAACTTGGTAAAGAATCACTTCCAGTTGCAAG AAGTTTCTTGATGAATGCTTTGAGATTGGAACCCACAAACCATGATGCTTGGTTCAAACTCGGATTGGTTTCAAAAATGG AAGGTTCATTACAGCAAGCTGCAGATTGCTTTCAAGCTTCACATGAGCTGAAGCTATCAGCTCCAGTGCAAAAATTTGAG TGA
Protein sequence (LotjaGi5g1v0033400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLCACSGEQFKFEEAPQSPESLATRDFSASGLSSNSRTGDCESKFSEAQVEDAESTLKEALSLNYEEARALLGRLEYQRG NFDAALQVFQGIDIKAISPRMIRAITERTKQRKPRSKADNVLPNLMSMHSVSLLLEAIYLKAKSLEELGQYTEAAKECRI IVDTVESSFPNGMPEGIGEDCKLPEIFHRALELLPNLWIQAGFLDDAVTAYRRALTKPWNLEPRRLACLQKDLATTLLYG GVEVNLPPQLQVKGPSPTTPLSNIEEAILLLLILSGKMALQEIEWDAEIMDHLTFSLSITGIFESLADHVLQIHPGIYDR AERWYFLALCYSAAGHNETALNLLKKACGSSEAKNRPHFPSFLFCAKLCSQYPIHAYEGIKFSQEVIDLAQHQNEHFLSQ GRKFLGICHGAAARISVLDSERVSFQRESLNFLNKAVLNGNDDPEAIFSLGLENAVQRNLNAAHDNMMMYSDMMVGSSRR GWKLLALIVSAQQRFKDAETLVDFALDESGRIDQLELLRLKAVLQISQQQPKQAIETYRILLAVIQAKKEAWLQAKEELH QAKIFRDEELTEQKLEMEAWQDLATIYADLRSFLDAKACVDKAKLIEFFAPRSWHTTGKLFEAQSLYKEAFVSFSVSLSI EPDYIPSIISTAELLIKLGKESLPVARSFLMNALRLEPTNHDAWFKLGLVSKMEGSLQQAADCFQASHELKLSAPVQKFE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 719 | 719 | 0.0 | ||
| PANTHER | 1 | 719 | 719 | 0.0 | – | |
| MobiDBLite | 15 | 41 | 27 | - | – | |
| MobiDBLite | 21 | 41 | 21 | - | – | |
| SUPERFAMILY | 47 | 161 | 115 | 4.49E-5 | ||
| Pfam | 49 | 91 | 43 | 0.0078 | – | |
| Coils | 58 | 78 | 21 | - | – | |
| SUPERFAMILY | 135 | 603 | 469 | 2.28E-8 | ||
| SMART | 135 | 168 | 34 | 120.0 | ||
| SUPERFAMILY | 308 | 539 | 232 | 1.33E-6 | ||
| ProSiteProfiles | 321 | 354 | 34 | 6.018 | ||
| SMART | 321 | 354 | 34 | 43.0 | ||
| Gene3D | 426 | 715 | 290 | 7.1E-21 | ||
| SMART | 515 | 548 | 34 | 210.0 | ||
| SUPERFAMILY | 572 | 708 | 137 | 4.14E-14 | ||
| ProSiteProfiles | 577 | 714 | 138 | 16.233 | ||
| SMART | 611 | 644 | 34 | 76.0 | ||
| ProSiteProfiles | 611 | 644 | 34 | 8.349 | ||
| ProSiteProfiles | 681 | 714 | 34 | 6.874 | ||
| SMART | 681 | 714 | 34 | 27.0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0033400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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